Carg20862 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20862
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-H2 finger protein
Location	Cucurbita_argyrosperma_scaffold_141 : 5620 .. 6192 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCTCTTCCACCGCTTCTTCCTCCAATTACTCCATCGCTAAGCTTGGTTTCGGCTACGCCATTGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCTCTCCTTCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCAACCTCCGTCTCTCTTCTTCCAGGCCGCCTCCCTCGCGCTCCGATGCCGGTATCATTCTCCCGCAAATCATTTTTGTCGCCGAGGACGACGGCGCTCCAGATCGCGACGATGACAACGGCGTCGTTGGCCTCGATCAGGCTGTGATTAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGGGCTAATTGCGTTTGTTCTATTTGTCTATGTGAGTATAAGGAGGCGGAGATGCTGAGGATGATGCCTGAGTGTAGACATTACTTTCATCTCTGTTGCATCGACGCTTGGTTGAAGCTTAATGGCTCTTGCCCGGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCACAATACATGGCGGATCGGAGAAGGAGATAA

mRNA sequence

ATGTCCTCCTCTTCCACCGCTTCTTCCTCCAATTACTCCATCGCTAAGCTTGGTTTCGGCTACGCCATTGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCTCTCCTTCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCAACCTCCGTCTCTCTTCTTCCAGGCCGCCTCCCTCGCGCTCCGATGCCGGTATCATTCTCCCGCAAATCATTTTTGTCGCCGAGGACGACGGCGCTCCAGATCGCGACGATGACAACGGCGTCGTTGGCCTCGATCAGGCTGTGATTAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGGGCTAATTGCGTTTGTTCTATTTGTCTATGTGAGTATAAGGAGGCGGAGATGCTGAGGATGATGCCTGAGTGTAGACATTACTTTCATCTCTGTTGCATCGACGCTTGGTTGAAGCTTAATGGCTCTTGCCCGGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCACAATACATGGCGGATCGGAGAAGGAGATAA

Coding sequence (CDS)

ATGTCCTCCTCTTCCACCGCTTCTTCCTCCAATTACTCCATCGCTAAGCTTGGTTTCGGCTACGCCATTGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCTCTCCTTCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCAACCTCCGTCTCTCTTCTTCCAGGCCGCCTCCCTCGCGCTCCGATGCCGGTATCATTCTCCCGCAAATCATTTTTGTCGCCGAGGACGACGGCGCTCCAGATCGCGACGATGACAACGGCGTCGTTGGCCTCGATCAGGCTGTGATTAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGGGCTAATTGCGTTTGTTCTATTTGTCTATGTGAGTATAAGGAGGCGGAGATGCTGAGGATGATGCCTGAGTGTAGACATTACTTTCATCTCTGTTGCATCGACGCTTGGTTGAAGCTTAATGGCTCTTGCCCGGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCACAATACATGGCGGATCGGAGAAGGAGATAA

Protein sequence

MSSSSTASSSNYSIAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR

Homology

[Close]

BLAST of Carg20862 vs. NCBI nr
Match: XP_022974673.1 (RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 RING-H2 finger protein ATL67-like isoform X3 [Cucurbita maxima] >XP_022975578.1 RING-H2 finger protein ATL67-like [Cucurbita maxima])

HSP 1 Score: 324.7 bits (831), Expect = 2.1e-85
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 38  LAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQA 97
           LAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQA
Sbjct: 37  LAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQA 96

Query: 98  VINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGS 157
           VINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGS
Sbjct: 97  VINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGS 156

Query: 158 CPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           CPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Sbjct: 157 CPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 189

[Close]

BLAST of Carg20862 vs. NCBI nr
Match: XP_022933391.1 (RING-H2 finger protein ATL67-like [Cucurbita moschata])

HSP 1 Score: 323.2 bits (827), Expect = 6.1e-85
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 39  AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV 98
           AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV
Sbjct: 39  AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV 98

Query: 99  INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC 158
           INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC
Sbjct: 99  INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC 158

Query: 159 PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Sbjct: 159 PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 190

[Close]

BLAST of Carg20862 vs. NCBI nr
Match: XP_022974672.1 (RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 6.1e-85
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 39  AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV 98
           AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV
Sbjct: 78  AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV 137

Query: 99  INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC 158
           INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC
Sbjct: 138 INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC 197

Query: 159 PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Sbjct: 198 PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 229

[Close]

BLAST of Carg20862 vs. NCBI nr
Match: XP_023540092.1 (RING-H2 finger protein ATL67-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 6.1e-85
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 39  AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV 98
           AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV
Sbjct: 82  AFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAV 141

Query: 99  INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC 158
           INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC
Sbjct: 142 INSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSC 201

Query: 159 PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Sbjct: 202 PVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 233

[Close]

BLAST of Carg20862 vs. NCBI nr
Match: XP_022147271.1 (RING-H2 finger protein ATL67-like [Momordica charantia])

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 142/160 (88.75%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 36  LLLAFYVCCRASRSRNLRLSSSRP--PPSRSDAGIILPQIIFVAEDDGA--PDRDDDNGV 95
           LLLAFYVCCRASRSR L    SRP   PSRSDAGIILPQIIFVAEDD A  PDRDDD+GV
Sbjct: 33  LLLAFYVCCRASRSRRLH---SRPSAAPSRSDAGIILPQIIFVAEDDAAAGPDRDDDSGV 92

Query: 96  VGLDQAVINSYPKFPFSKDKSM-AGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDA 155
           VGLDQAVINSYPKFPFSKDK+M  G NCVCSICLC+YKEAEMLRMMPECRH+FHLCCIDA
Sbjct: 93  VGLDQAVINSYPKFPFSKDKTMGGGTNCVCSICLCDYKEAEMLRMMPECRHFFHLCCIDA 152

Query: 156 WLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           WLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Sbjct: 153 WLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 189

[Close]

BLAST of Carg20862 vs. TAIR10
Match: AT2G46160.1 (RING/U-box superfamily protein)

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-49
Identity = 101/165 (61.21%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 36  LLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLD 95
           +LL+ Y+CCR SR R   + S+          +ILP+IIFVAE+D   D +  + VVGLD
Sbjct: 52  VLLSSYICCRDSRRRTTAVEST----GDRGGSVILPRIIFVAEEDN-EDLEAGDVVVGLD 111

Query: 96  QAVINSYPKFPFSKDKSMA-------GANCVCSICLCEYKEAEMLRMMPECRHYFHLCCI 155
           QAVINSYPKF FSKD S A       G +  CSICLCEYKEAEMLRMMPEC+HYFHLCC+
Sbjct: 112 QAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCL 171

Query: 156 DAWLKLNGSCPVCRNSPLP----TPLSTPLQEVVPLSQYMADRRR 190
           DAWLKLNGSCPVCRNSPLP             VVPLSQY ADRRR
Sbjct: 172 DAWLKLNGSCPVCRNSPLPXXXXXXXXXXXXXVVPLSQYAADRRR 211

[Close]

BLAST of Carg20862 vs. TAIR10
Match: AT3G61550.1 (RING/U-box superfamily protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-40
Identity = 86/140 (61.43%), Postives = 96/140 (68.57%), Query Frame = 0


Query: 65  DAGIILPQIIFVAEDDGAPDRDDDNGVV-GLDQAVINSYPKFPFSKDKSMA--------- 124
           D G+I+P+IIFVAEDD   D +  N VV GLD +VINSYPKF F+KD +           
Sbjct: 73  DRGVIVPRIIFVAEDD---DLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDG 132

Query: 125 -GANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TP 184
            G    CSICLCEY E EMLRMMPEC+HYFH+ C+DAWLKLNGSCPVCRNSPLP      
Sbjct: 133 EGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPXXXXXX 192

Query: 185 LSTPLQEVVPLSQYMADRRR 190
                 EVVPLSQY ADRRR
Sbjct: 193 XXXXXXEVVPLSQYAADRRR 209

[Close]

BLAST of Carg20862 vs. TAIR10
Match: AT2G35910.1 (RING/U-box superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-28
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 91  VVGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDA 150
           V GLD+  I SYPK  +S+ K    A+C C+ICL +YK   +LR +P+C H FHL CID 
Sbjct: 119 VPGLDEDTIQSYPKILYSEAKGPTTASC-CAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 178

Query: 151 WLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRR 189
           WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A  R
Sbjct: 179 WLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATR 215

[Close]

BLAST of Carg20862 vs. TAIR10
Match: AT5G06490.1 (RING/U-box superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 9.5e-24
Identity = 61/158 (38.61%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 36  LLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILP-QIIFVAEDDGAPDRDDDNGVV-- 95
           + L  Y C R+  S +   +       R   G + P Q  F  EDD     + D  VV  
Sbjct: 40  ITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFDFEDD-----ESDTVVVEV 99

Query: 96  -GLDQAVINSYPKFP-------FSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFH 155
            GL + VI  +PK P       +S  K  +  +C CSICL +YK+ +M+R++P+C H FH
Sbjct: 100 LGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSC-CSICLADYKKMDMIRVLPDCNHLFH 159

Query: 156 LCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 183
             C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 160 DNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

[Close]

BLAST of Carg20862 vs. TAIR10
Match: AT5G07040.1 (RING/U-box superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-22
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 92  VGLDQAVINSYPKFPFSKDKSMAGA-NCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDA 151
           +GLD+ VI SYP+      + +    N  CSICLC+Y+  E +R +PEC H FH  C+D 
Sbjct: 65  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 124

Query: 152 WLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 182
           WL+ + +CP+CRNSP P+ L+TPL ++VPL+
Sbjct: 125 WLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg20862 vs. Swiss-Prot
Match: sp|O82353|ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.0e-48
Identity = 101/165 (61.21%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 36  LLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLD 95
           +LL+ Y+CCR SR R   + S+          +ILP+IIFVAE+D   D +  + VVGLD
Sbjct: 52  VLLSSYICCRDSRRRTTAVEST----GDRGGSVILPRIIFVAEEDN-EDLEAGDVVVGLD 111

Query: 96  QAVINSYPKFPFSKDKSMA-------GANCVCSICLCEYKEAEMLRMMPECRHYFHLCCI 155
           QAVINSYPKF FSKD S A       G +  CSICLCEYKEAEMLRMMPEC+HYFHLCC+
Sbjct: 112 QAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCL 171

Query: 156 DAWLKLNGSCPVCRNSPLP----TPLSTPLQEVVPLSQYMADRRR 190
           DAWLKLNGSCPVCRNSPLP             VVPLSQY ADRRR
Sbjct: 172 DAWLKLNGSCPVCRNSPLPXXXXXXXXXXXXXVVPLSQYAADRRR 211

[Close]

BLAST of Carg20862 vs. Swiss-Prot
Match: sp|Q9M313|ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-39
Identity = 86/140 (61.43%), Postives = 96/140 (68.57%), Query Frame = 0


Query: 65  DAGIILPQIIFVAEDDGAPDRDDDNGVV-GLDQAVINSYPKFPFSKDKSMA--------- 124
           D G+I+P+IIFVAEDD   D +  N VV GLD +VINSYPKF F+KD +           
Sbjct: 73  DRGVIVPRIIFVAEDD---DLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDG 132

Query: 125 -GANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TP 184
            G    CSICLCEY E EMLRMMPEC+HYFH+ C+DAWLKLNGSCPVCRNSPLP      
Sbjct: 133 EGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPXXXXXX 192

Query: 185 LSTPLQEVVPLSQYMADRRR 190
                 EVVPLSQY ADRRR
Sbjct: 193 XXXXXXEVVPLSQYAADRRR 209

[Close]

BLAST of Carg20862 vs. Swiss-Prot
Match: sp|Q8RX29|ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-27
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 91  VVGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDA 150
           V GLD+  I SYPK  +S+ K    A+C C+ICL +YK   +LR +P+C H FHL CID 
Sbjct: 119 VPGLDEDTIQSYPKILYSEAKGPTTASC-CAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 178

Query: 151 WLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRR 189
           WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A  R
Sbjct: 179 WLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATR 215

[Close]

BLAST of Carg20862 vs. Swiss-Prot
Match: sp|Q9FG21|ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22
Identity = 61/158 (38.61%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 36  LLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILP-QIIFVAEDDGAPDRDDDNGVV-- 95
           + L  Y C R+  S +   +       R   G + P Q  F  EDD     + D  VV  
Sbjct: 40  ITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFDFEDD-----ESDTVVVEV 99

Query: 96  -GLDQAVINSYPKFP-------FSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFH 155
            GL + VI  +PK P       +S  K  +  +C CSICL +YK+ +M+R++P+C H FH
Sbjct: 100 LGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSC-CSICLADYKKMDMIRVLPDCNHLFH 159

Query: 156 LCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 183
             C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 160 DNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

[Close]

BLAST of Carg20862 vs. Swiss-Prot
Match: sp|Q9FL42|ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-21
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 92  VGLDQAVINSYPKFPFSKDKSMAGA-NCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDA 151
           +GLD+ VI SYP+      + +    N  CSICLC+Y+  E +R +PEC H FH  C+D 
Sbjct: 65  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 124

Query: 152 WLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 182
           WL+ + +CP+CRNSP P+ L+TPL ++VPL+
Sbjct: 125 WLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg20862 vs. TrEMBL
Match: tr|A0A2P2QNY7|A0A2P2QNY7_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 108/155 (69.68%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 36  LLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDN-GVVGL 95
           +LLA Y+CCRASR               +  GIILP IIFV ED    D D D    VGL
Sbjct: 58  ILLASYICCRASRXXXXXXXXXXXXXXXASDGIILPSIIFVGEDYDEQDSDRDGAAAVGL 117

Query: 96  DQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKL 155
           DQAVINSYPKF ++KD S  G N  CSICLCEYK+ EMLRMMPECRH+FHLCCIDAWLKL
Sbjct: 118 DQAVINSYPKFQYTKDGSFHGRNTTCSICLCEYKDLEMLRMMPECRHFFHLCCIDAWLKL 177

Query: 156 NGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRR 190
           NGSCPVCRNSPLPTPLSTPL EVVPLSQY ADRRR
Sbjct: 178 NGSCPVCRNSPLPTPLSTPLSEVVPLSQYAADRRR 212

[Close]

BLAST of Carg20862 vs. TrEMBL
Match: tr|A0A2C9WP11|A0A2C9WP11_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G251800 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 109/157 (69.43%), Postives = 121/157 (77.07%), Query Frame = 0


Query: 36  LLLAFYVCCRASR--SRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVG 95
           +LLA Y+CCR SR  SR           S SD GII+P+IIFVAED+   +RD +   VG
Sbjct: 52  ILLASYICCRTSRNHSRGRXXXXXXXXXSPSD-GIIIPRIIFVAEDEDDQERDSERAAVG 111

Query: 96  LDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLK 155
           L+QAVINSYPKF F+K+ S+ G    C ICLCEYK+ EMLRMMPECRHYFHLCCIDAWLK
Sbjct: 112 LEQAVINSYPKFQFTKEGSLDGNCTTCPICLCEYKDLEMLRMMPECRHYFHLCCIDAWLK 171

Query: 156 LNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           LNGSCPVCRNSPLPTPLSTPL EVVPLSQY  DRRRR
Sbjct: 172 LNGSCPVCRNSPLPTPLSTPLAEVVPLSQYAEDRRRR 207

[Close]

BLAST of Carg20862 vs. TrEMBL
Match: tr|A0A067K9Q7|A0A067K9Q7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14325 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.2e-54
Identity = 108/161 (67.08%), Postives = 119/161 (73.91%), Query Frame = 0


Query: 36  LLLAFYVCCRASRSRNLRLSSSRPPPSRSDA------GIILPQIIFVAEDDGAPDRDDDN 95
           +LLA Y+CCRASR                        GI+LP+IIFVAED+   +RD + 
Sbjct: 49  VLLASYMCCRASRXXXXXXXXXXXXXXXXXXXXXVPDGILLPRIIFVAEDEDDQERDLET 108

Query: 96  GVVGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCID 155
             VGLDQAVINSYPKF F+KD S  G +  CSICLCEYK+ EMLRMMPECRH+FHLCCID
Sbjct: 109 SAVGLDQAVINSYPKFQFTKDGSSNGNSTTCSICLCEYKDLEMLRMMPECRHFFHLCCID 168

Query: 156 AWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           AWLKLNGSCPVCRNSPLPTPLSTPL EVVPLSQY ADRRRR
Sbjct: 169 AWLKLNGSCPVCRNSPLPTPLSTPLSEVVPLSQYAADRRRR 209

[Close]

BLAST of Carg20862 vs. TrEMBL
Match: tr|A0A1S3AVV0|A0A1S3AVV0_CUCME (RING-H2 finger protein ATL67 OS=Cucumis melo OX=3656 GN=LOC103483238 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.4e-53
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 90  GVVGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCID 149
           GVVGLDQ+VINSYPKFPFS+DKSMAGANCVCSICLCEYK+AEMLRMMPECRHYFHLCCID
Sbjct: 84  GVVGLDQSVINSYPKFPFSRDKSMAGANCVCSICLCEYKDAEMLRMMPECRHYFHLCCID 143

Query: 150 AWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           AWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Sbjct: 144 AWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 184

[Close]

BLAST of Carg20862 vs. TrEMBL
Match: tr|A0A0A0L7B6|A0A0A0L7B6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121045 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.1e-53
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 90  GVVGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKEAEMLRMMPECRHYFHLCCID 149
           GVVGLDQ VINSYPKFPFS+DKSMAGANCVCSICLCEYK+AEMLRMMPECRHYFHLCCID
Sbjct: 84  GVVGLDQTVINSYPKFPFSRDKSMAGANCVCSICLCEYKDAEMLRMMPECRHYFHLCCID 143

Query: 150 AWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 191
           AWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Sbjct: 144 AWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR 184

The following BLAST results are available for this feature:

BLAST of Carg20862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974673.1	2.1e-85	100.00	RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 ...	[more]
XP_022933391.1	6.1e-85	100.00	RING-H2 finger protein ATL67-like [Cucurbita moschata]	[more]
XP_022974672.1	6.1e-85	100.00	RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima]	[more]
XP_023540092.1	6.1e-85	100.00	RING-H2 finger protein ATL67-like, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022147271.1	2.4e-73	88.75	RING-H2 finger protein ATL67-like [Momordica charantia]	[more]

BLAST of Carg20862 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46160.1	5.0e-49	61.21	RING/U-box superfamily protein	[more]
AT3G61550.1	1.1e-40	61.43	RING/U-box superfamily protein	[more]
AT2G35910.1	1.7e-28	58.16	RING/U-box superfamily protein	[more]
AT5G06490.1	9.5e-24	38.61	RING/U-box superfamily protein	[more]
AT5G07040.1	3.0e-22	47.25	RING/U-box superfamily protein	[more]

BLAST of Carg20862 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82353\|ATL67_ARATH	9.0e-48	61.21	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
sp\|Q9M313\|ATL68_ARATH	2.0e-39	61.43	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]
sp\|Q8RX29\|ATL70_ARATH	3.0e-27	58.16	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
sp\|Q9FG21\|ATL71_ARATH	1.7e-22	38.61	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
sp\|Q9FL42\|ATL69_ARATH	5.5e-21	47.25	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]

BLAST of Carg20862 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P2QNY7\|A0A2P2QNY7_RHIMU	1.3e-54	69.68	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A2C9WP11\|A0A2C9WP11_MANES	1.3e-54	69.43	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G251800 PE=4 SV=...	[more]
tr\|A0A067K9Q7\|A0A067K9Q7_JATCU	8.2e-54	67.08	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14325 PE=4 SV=1	[more]
tr\|A0A1S3AVV0\|A0A1S3AVV0_CUCME	2.4e-53	97.03	RING-H2 finger protein ATL67 OS=Cucumis melo OX=3656 GN=LOC103483238 PE=4 SV=1	[more]
tr\|A0A0A0L7B6\|A0A0A0L7B6_CUCSA	3.1e-53	97.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121045 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20862-RA	Carg20862-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 120..161 e-value: 1.9E-5 score: 34.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 120..162 e-value: 6.9E-10 score: 39.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 120..162 score: 12.15
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 82..166 e-value: 6.7E-21 score: 75.7
None	No IPR available	PANTHER	PTHR14155:SF71	RING-H2 FINGER PROTEIN ATL67-RELATED	coord: 8..178
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 8..178
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 105..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20862	Cla021201	Watermelon (97103) v1	carwmB0992
Carg20862	MELO3C006076	Melon (DHL92) v3.5.1	carmeB0968
Carg20862	CSPI03G08440	Wild cucumber (PI 183967)	carcpiB1031
Carg20862	Cucsa.258750	Cucumber (Gy14) v1	carcgyB1110
Carg20862	CmaCh14G020710	Cucurbita maxima (Rimu)	carcmaB1373
Carg20862	CmaCh00G003410	Cucurbita maxima (Rimu)	carcmaB1372
Carg20862	CmaCh06G010230	Cucurbita maxima (Rimu)	carcmaB1375
Carg20862	CmoCh06G010780	Cucurbita moschata (Rifu)	carcmoB1332
Carg20862	CmoCh14G021290	Cucurbita moschata (Rifu)	carcmoB1330
Carg20862	Lsi05G020750	Bottle gourd (USVL1VR-Ls)	carlsiB907
Carg20862	Cp4.1LG08g01250	Cucurbita pepo (Zucchini)	carcpeB1380
Carg20862	Cp4.1LG03g16550	Cucurbita pepo (Zucchini)	carcpeB1379
Carg20862	CsGy3G008550	Cucumber (Gy14) v2	carcgybB0980
Carg20862	MELO3C006076.2	Melon (DHL92) v3.6.1	carmedB0978
Carg20862	CsaV3_3G008560	Cucumber (Chinese Long) v3	carcucB1037
Carg20862	Cla97C05G081510	Watermelon (97103) v2	carwmbB1047

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20862	Carg20974	Silver-seed gourd	carcarB477

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20862	Cucumber (Chinese Long) v2	carcuB1007
Carg20862	Watermelon (Charleston Gray)	carwcgB0968