Carg20537 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20537
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Methyl-cpg-binding domain-containing protein 8
Location	Cucurbita_argyrosperma_scaffold_113 : 140551 .. 141204 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACAACTATGGTTGCTTCCCCCTCCGACGACAGATTCCGCATGAATACTCTCCCGATCATAGATCTCCGTCTCCTCTCCCAATCCGAACTCTATTGTCTCTCTCGTTTCTCCTCCTCATCGTCGTCTTCAATCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGGAAACAAACCTATTCTCGTCTTCGTCTTGCCCCTCGCAAATCTCAGTTTCCTTCCTCATCCTCCTCCTCCACAATTCGCCCCCAATCCCCTGACCGCTTCGATGAAGAGAGCGCTGAGATTGTTACTCTCTTCAAGCAGCTCTTCGTTGGAGAGTCTCATTGTGGCGTCAATGACAGCTATGATGATGGAGATGAGGACCTGGTTCTTGTTAACCACATTTATGATGAATCGGTACCTGAATCTTCCTACGCGATTTTTCACAGTATTCCTGTTGATATCATCGATAGCAGTTACGCTCCGATTAAGCGGCGGCGAGGACGACCGCGGAAGGATAGTAATCGGTTTGCTCAGAGCAATGGAAATGCGGCTGCGAACTCCATAAGCGGATGCGATAAACGAGCGGAGGAGGATGAGATCGTAATGGTAATGCTGTGA

mRNA sequence

ATGGCTTCCACAACTATGGTTGCTTCCCCCTCCGACGACAGATTCCGCATGAATACTCTCCCGATCATAGATCTCCGTCTCCTCTCCCAATCCGAACTCTATTGTCTCTCTCGTTTCTCCTCCTCATCGTCGTCTTCAATCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGGAAACAAACCTATTCTCGTCTTCGTCTTGCCCCTCGCAAATCTCAGTTTCCTTCCTCATCCTCCTCCTCCACAATTCGCCCCCAATCCCCTGACCGCTTCGATGAAGAGAGCGCTGAGATTGTTACTCTCTTCAAGCAGCTCTTCGTTGGAGAGTCTCATTGTGGCGTCAATGACAGCTATGATGATGGAGATGAGGACCTGGTTCTTGTTAACCACATTTATGATGAATCGGTACCTGAATCTTCCTACGCGATTTTTCACAGTATTCCTGTTGATATCATCGATAGCAGTTACGCTCCGATTAAGCGGCGGCGAGGACGACCGCGGAAGGATAGTAATCGGTTTGCTCAGAGCAATGGAAATGCGGCTGCGAACTCCATAAGCGGATGCGATAAACGAGCGGAGGAGGATGAGATCGTAATGGTAATGCTGTGA

Coding sequence (CDS)

ATGGCTTCCACAACTATGGTTGCTTCCCCCTCCGACGACAGATTCCGCATGAATACTCTCCCGATCATAGATCTCCGTCTCCTCTCCCAATCCGAACTCTATTGTCTCTCTCGTTTCTCCTCCTCATCGTCGTCTTCAATCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGGAAACAAACCTATTCTCGTCTTCGTCTTGCCCCTCGCAAATCTCAGTTTCCTTCCTCATCCTCCTCCTCCACAATTCGCCCCCAATCCCCTGACCGCTTCGATGAAGAGAGCGCTGAGATTGTTACTCTCTTCAAGCAGCTCTTCGTTGGAGAGTCTCATTGTGGCGTCAATGACAGCTATGATGATGGAGATGAGGACCTGGTTCTTGTTAACCACATTTATGATGAATCGGTACCTGAATCTTCCTACGCGATTTTTCACAGTATTCCTGTTGATATCATCGATAGCAGTTACGCTCCGATTAAGCGGCGGCGAGGACGACCGCGGAAGGATAGTAATCGGTTTGCTCAGAGCAATGGAAATGCGGCTGCGAACTCCATAAGCGGATGCGATAAACGAGCGGAGGAGGATGAGATCGTAATGGTAATGCTGTGA

Protein sequence

MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQLFVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGRPRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML

Homology

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_022952018.1 (methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita moschata] >XP_023538587.1 methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.9 bits (982), Expect = 7.4e-103
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 218
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 217

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_023002677.1 (methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 382.9 bits (982), Expect = 7.4e-103
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 218
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 217

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_022952017.1 (methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 377.9 bits (969), Expect = 2.4e-101
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_023002676.1 (methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 377.9 bits (969), Expect = 2.4e-101
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_023538586.1 (methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.9 bits (969), Expect = 2.4e-101
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. TAIR10
Match: AT1G22310.2 (methyl-CPG-binding domain 8)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-10
Identity = 72/183 (39.34%), Postives = 92/183 (50.27%), Query Frame = 0


Query: 13  DRFRMNTLPIIDLRLLSQSELYCLSRFS---XXXXXXXXXXXXXXXXLIPKIDRSVFNES 72
           +R    +LP+ID RLLSQSEL  LS+ S   XXXXXXXXXXX     L PKIDRSVFNES
Sbjct: 19  NRLSAESLPLIDTRLLSQSELRALSQCSXXXXXXXXXXXXXXGGDDDLTPKIDRSVFNES 78

Query: 73  AGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQLFVGESH--- 132
           AGSRKQT+ RLRLA R  Q                       ++ +L + LF  +S+   
Sbjct: 79  AGSRKQTFLRLRLA-RHPQ--PXXXXXXXXXXXXXXXXXXXTQVASLLRSLFNVDSNQSX 138

Query: 133 ---CGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGRPRK 187
                      D +  +   +++Y     +S   +       I  +S   IKR+RGRPRK
Sbjct: 139 XXXXXXXXXXXDNEGQIHYNSYVYQRPNLDSIQNVL------IQGTSGNKIKRKRGRPRK 192

[Close]

BLAST of Carg20537 vs. Swiss-Prot
Match: sp|Q9LME6|MBD8_ARATH (Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.4e-09
Identity = 72/183 (39.34%), Postives = 92/183 (50.27%), Query Frame = 0


Query: 13  DRFRMNTLPIIDLRLLSQSELYCLSRFS---XXXXXXXXXXXXXXXXLIPKIDRSVFNES 72
           +R    +LP+ID RLLSQSEL  LS+ S   XXXXXXXXXXX     L PKIDRSVFNES
Sbjct: 19  NRLSAESLPLIDTRLLSQSELRALSQCSXXXXXXXXXXXXXXGGDDDLTPKIDRSVFNES 78

Query: 73  AGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQLFVGESH--- 132
           AGSRKQT+ RLRLA R  Q                       ++ +L + LF  +S+   
Sbjct: 79  AGSRKQTFLRLRLA-RHPQ--PXXXXXXXXXXXXXXXXXXXTQVASLLRSLFNVDSNQSX 138

Query: 133 ---CGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGRPRK 187
                      D +  +   +++Y     +S   +       I  +S   IKR+RGRPRK
Sbjct: 139 XXXXXXXXXXXDNEGQIHYNSYVYQRPNLDSIQNVL------IQGTSGNKIKRKRGRPRK 192

[Close]

BLAST of Carg20537 vs. TrEMBL
Match: tr|A0A0A0LPH8|A0A0A0LPH8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368980 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 9.9e-80
Identity = 185/222 (83.33%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFS-XXXXXXXXXXXXXXXXLIP 60
           MASTTMV S S+D +RMN LPIIDLRLLSQSEL+CLSRFS XXXXXXXXXXXXXXXXLIP
Sbjct: 1   MASTTMVPSSSNDSYRMNPLPIIDLRLLSQSELHCLSRFSXXXXXXXXXXXXXXXXXLIP 60

Query: 61  KIDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQ 120
           KIDRSVFNESAGSRKQTYSRLRLAPRK QF SSSSSSTIRPQSPDR D ESA+IV LF Q
Sbjct: 61  KIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVHLFNQ 120

Query: 121 LFVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRG 180
           LFVG+SHC VNDSY DGDEDLVLVNH YDESVP+SSYAIF SIPVD+IDSS  PIKRRRG
Sbjct: 121 LFVGDSHCVVNDSYGDGDEDLVLVNHTYDESVPDSSYAIFQSIPVDVIDSSQVPIKRRRG 180

Query: 181 RPRKDSNRFAQSNGNAAANSISGCDK----RAEEDEIVMVML 218
           RPRKDSNRF QSNGNAA    SGCDK     A ++EIVMVML
Sbjct: 181 RPRKDSNRFVQSNGNAAPEFKSGCDKPAAAAAAKEEIVMVML 222

[Close]

BLAST of Carg20537 vs. TrEMBL
Match: tr|A0A1S3BAU3|A0A1S3BAU3_CUCME (methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488067 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 8.4e-79
Identity = 184/221 (83.26%), Postives = 194/221 (87.78%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFS-XXXXXXXXXXXXXXXXLIP 60
           MASTTMV S S+D +RMN LPIIDLRLLSQSEL+CLSRFS XXXXXXXXXXXXXXXXLIP
Sbjct: 1   MASTTMVPSSSNDSYRMNPLPIIDLRLLSQSELHCLSRFSXXXXXXXXXXXXXXXXXLIP 60

Query: 61  KIDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQ 120
           KIDRSVFNESAGSRKQTYSRLRLAPRK QF SSSSSSTIRPQS DR D ESA+IV LF Q
Sbjct: 61  KIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSSDRLDTESAQIVHLFNQ 120

Query: 121 LFVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRG 180
           LFVG+SHC VNDS+ DGDEDLVLVNH YDESVP+SSYAIF SIPVD+IDSS+APIKRRRG
Sbjct: 121 LFVGDSHCAVNDSHGDGDEDLVLVNHTYDESVPDSSYAIFQSIPVDVIDSSHAPIKRRRG 180

Query: 181 RPRKDSNRFAQSNGNAAANSISGCDK---RAEEDEIVMVML 218
           RPRKDSNRF QSNGNAA    SG DK    A E+EIVMVML
Sbjct: 181 RPRKDSNRFVQSNGNAAPEFKSGSDKPAGAAAEEEIVMVML 221

[Close]

BLAST of Carg20537 vs. TrEMBL
Match: tr|A0A1S3BC64|A0A1S3BC64_CUCME (methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488067 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.7e-77
Identity = 181/218 (83.03%), Postives = 191/218 (87.61%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFS-XXXXXXXXXXXXXXXXLIP 60
           MASTTMV S S+D +RMN LPIIDLRLLSQSEL+CLSRFS XXXXXXXXXXXXXXXXLIP
Sbjct: 1   MASTTMVPSSSNDSYRMNPLPIIDLRLLSQSELHCLSRFSXXXXXXXXXXXXXXXXXLIP 60

Query: 61  KIDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQ 120
           KIDRSVFNESAGSRKQTYSRLRLAPRK QF SSSSSSTIRPQS DR D ESA+IV LF Q
Sbjct: 61  KIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSSDRLDTESAQIVHLFNQ 120

Query: 121 LFVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRG 180
           LFVG+SHC VNDS+ DGDEDLVLVNH YDESVP+SSYAIF SIPVD+IDSS+APIKRRRG
Sbjct: 121 LFVGDSHCAVNDSHGDGDEDLVLVNHTYDESVPDSSYAIFQSIPVDVIDSSHAPIKRRRG 180

Query: 181 RPRKDSNRFAQSNGNAAANSISGCDK---RAEEDEIVM 215
           RPRKDSNRF QSNGNAA    SG DK    A E+EIVM
Sbjct: 181 RPRKDSNRFVQSNGNAAPEFKSGSDKPAGAAAEEEIVM 218

[Close]

BLAST of Carg20537 vs. TrEMBL
Match: tr|A0A218X7S9|A0A218X7S9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr007038 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 92/186 (49.46%), Postives = 120/186 (64.52%), Query Frame = 0


Query: 2   ASTTMVASPSDD--RFRMNTLPIIDLRLLSQSELYCLSRFSXXXXXXXXXXXXXXXXLIP 61
           A+ T  A+ +DD    R  +LP+IDLRLLSQSELY LS  S  XXXXXXX        IP
Sbjct: 10  ATATPTATAADDSRHLRFESLPLIDLRLLSQSELYSLSLLSSPXXXXXXXCQDDVVIPIP 69

Query: 62  KIDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQ 121
           KIDRSVFNESAGSRKQTY RLRLAPR +  P    +   R ++P+ F+EE++ I++L K 
Sbjct: 70  KIDRSVFNESAGSRKQTYFRLRLAPRTTSNPPHPPAPISRQKNPEPFEEENSRIISLLKG 129

Query: 122 LFV--GESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRR 181
           LF    ES   +  + +D +  L+ V   YDESVPE+S ++  SIP+ ++D  +    R+
Sbjct: 130 LFYPHAESEPPLPTTPED-ESSLIAVPVRYDESVPETSDSVLQSIPIGVVDLGFC--NRK 189

Query: 182 RGRPRK 184
           RGRPRK
Sbjct: 190 RGRPRK 192

[Close]

BLAST of Carg20537 vs. TrEMBL
Match: tr|A0A2P5FA24|A0A2P5FA24_9ROSA (Methyl-CpG DNA binding OS=Trema orientalis OX=63057 GN=TorRG33x02_096610 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 96/190 (50.53%), Postives = 124/190 (65.26%), Query Frame = 0


Query: 6   MVASPSDDR-FRMNTLPIIDLRLLSQSELYCL-------SRFSXXXXXXXXXXXXXXXXL 65
           M ++  D R  R+++LP+IDLRLLSQS+L+ L           XXXXXXXXX       L
Sbjct: 1   MASATGDHRHLRLDSLPLIDLRLLSQSDLFSLXXXXXXXXXXXXXXXXXXXXCSGDDDVL 60

Query: 66  IPKIDRSVFNESAGSRKQTYSRLRLAPRKSQFPSS-SSSSTIRPQSPD-RFDEESAEIVT 125
           IPKIDRSVFNESAGSRKQT+SRLRLAPR SQ  SS S+SS  R Q+P+   D+E+  I+ 
Sbjct: 61  IPKIDRSVFNESAGSRKQTFSRLRLAPRNSQLSSSASASSAARRQTPEPPLDQETFRIIG 120

Query: 126 LFKQLFVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIK 185
           L KQLF  E+H            +LV V   Y++SVPES   + H++P+D++  S A  K
Sbjct: 121 LLKQLFASETHA-----------ELVSVPVDYNDSVPESYGDVLHNVPIDVLVDS-AMKK 178

The following BLAST results are available for this feature:

BLAST of Carg20537 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952018.1	7.4e-103	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita moscha...	[more]
XP_023002677.1	7.4e-103	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita maxima...	[more]
XP_022952017.1	2.4e-101	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita moscha...	[more]
XP_023002676.1	2.4e-101	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita maxima...	[more]
XP_023538586.1	2.4e-101	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita pepo s...	[more]

BLAST of Carg20537 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22310.2	5.2e-10	39.34	methyl-CPG-binding domain 8	[more]

BLAST of Carg20537 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LME6\|MBD8_ARATH	9.4e-09	39.34	Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg20537 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPH8\|A0A0A0LPH8_CUCSA	9.9e-80	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368980 PE=4 SV=1	[more]
tr\|A0A1S3BAU3\|A0A1S3BAU3_CUCME	8.4e-79	83.26	methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Cucumis melo OX=365...	[more]
tr\|A0A1S3BC64\|A0A1S3BC64_CUCME	2.7e-77	83.03	methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Cucumis melo OX=365...	[more]
tr\|A0A218X7S9\|A0A218X7S9_PUNGR	2.3e-28	49.46	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr007038 PE=4 SV=1	[more]
tr\|A0A2P5FA24\|A0A2P5FA24_9ROSA	1.3e-26	50.53	Methyl-CpG DNA binding OS=Trema orientalis OX=63057 GN=TorRG33x02_096610 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR037472	MBD8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20537-RA	Carg20537-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..202
None	No IPR available	PANTHER	PTHR37701:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 1..195
IPR037472	Methyl-CpG-binding domain-containing protein 8	PANTHER	PTHR37701	FAMILY NOT NAMED	coord: 1..195

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20537	Cla022100	Watermelon (97103) v1	carwmB0649
Carg20537	Csa2G368980	Cucumber (Chinese Long) v2	carcuB0670
Carg20537	MELO3C011031	Melon (DHL92) v3.5.1	carmeB0648
Carg20537	ClCG08G011160	Watermelon (Charleston Gray)	carwcgB0633
Carg20537	CSPI02G21070	Wild cucumber (PI 183967)	carcpiB0680
Carg20537	CmaCh12G001600	Cucurbita maxima (Rimu)	carcmaB0920
Carg20537	CmaCh05G005020	Cucurbita maxima (Rimu)	carcmaB0921
Carg20537	CmoCh12G001240	Cucurbita moschata (Rifu)	carcmoB0893
Carg20537	CmoCh05G005270	Cucurbita moschata (Rifu)	carcmoB0894
Carg20537	Lsi08G009700	Bottle gourd (USVL1VR-Ls)	carlsiB593
Carg20537	Cp4.1LG07g01390	Cucurbita pepo (Zucchini)	carcpeB0925
Carg20537	Cp4.1LG11g04500	Cucurbita pepo (Zucchini)	carcpeB0924
Carg20537	CsGy2G020790	Cucumber (Gy14) v2	carcgybB0646
Carg20537	MELO3C011031.2	Melon (DHL92) v3.6.1	carmedB0658
Carg20537	CsaV3_2G029730	Cucumber (Chinese Long) v3	carcucB0682
Carg20537	Cla97C08G154130	Watermelon (97103) v2	carwmbB0679
Carg20537	Bhi04G000631	Wax gourd	carwgoB0765

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20537	Carg08191	Silver-seed gourd	carcarB068

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20537	Cucumber (Chinese Long) v3	carcucB0684
Carg20537	Melon (DHL92) v3.5.1	carmeB0650
Carg20537	Melon (DHL92) v3.6.1	carmedB0660
Carg20537	Watermelon (Charleston Gray)	carwcgB0631
Carg20537	Watermelon (97103) v1	carwmB0650
Carg20537	Watermelon (97103) v2	carwmbB0677
Carg20537	Wax gourd	carwgoB0767
Carg20537	Cucumber (Gy14) v2	carcgybB0648
Carg20537	Cucumber (Gy14) v1	carcgyB0725
Carg20537	Cucumber (Gy14) v1	carcgyB0728
Carg20537	Wild cucumber (PI 183967)	carcpiB0682
Carg20537	Cucumber (Chinese Long) v2	carcuB0672