Carg20128 (gene) Silver-seed gourd

Overview
NameCarg20128
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_168 : 300102 .. 301011 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGCAGTGAAATTGAAAGAAGAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAATCTCAGCCACTCCAGATGCCAAGGTAAGCTTGCTAATGATTCAGTAACTTGTAAATCTTATTATTATTGTTCATATTAATACTTAAAAAACGAGATTAAATCATAAGTTTAGTACATGAACTTTGACATTTCTAGTATATTTAGGCACAAATTTCAAACTTTCTGAATGAGAAAGTTATTGATAGGATGATCTAGTTTGACAAAACATTCAAATGAGAAAGTTATCGATATCATGATCTAGTTAGAACGTTCTGAAAAACAAGTTCTATAGATTGTCTACAAGTTTATACTTCTGATTGAGAAAGTTATTGATATGATGATCGAGTTAGAACGATATGAAAAATAAGGTCTATAGATTGGCTAAAAATTTATGGAACGGGGGCTTGTTAATGCAGGGAAATGCAGGTGAATTGGCAGTGAAGGACTCGAAATAGCACAAAAAAGTGCATTAGAAGGGGCATATGATGGCAGCTACTGGTAAATGATTTTGAGGCCAAATTGAAAGATGATTGGAGAAATAGTTATATATCTTTACACAGAAACACACACATATATATAAACCAATTTTTAACGATGTTGTAAAGATTATAGAATGTTTGATGATGACTTTAATTGTCTAAATAAGAACTCCGGTGGTTCATGATAACTTAAACTAAGACTTTTTATTACATGTAACTGTTCTGTTCGAATTTAAACCTTGATAAAGCACTAACTATTTTTTAAAATATATATTGGGCTAAATCAAATAAATATCAGAGTATTAGGAATTAAAATATATATTGGGCTGAATCAAAT

mRNA sequence

GAGGCAGTGAAATTGAAAGAAGAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAATCTCAGCCACTCCAGATGCCAAGGGAAATGCAGGTGAATTGGCAGTGAAGGACTCGAAATAGCACAAAAAAGTGCATTAGAAGGGGCATATGATGGCAGCTACTGGTAAATGATTTTGAGGCCAAATTGAAAGATGATTGGAGAAATAGTTATATATCTTTACACAGAAACACACACATATATATAAACCAATTTTTAACGATGTTGTAAAGATTATAGAATGTTTGATGATGACTTTAATTGTCTAAATAAGAACTCCGGTGGTTCATGATAACTTAAACTAAGACTTTTTATTACATGTAACTGTTCTGTTCGAATTTAAACCTTGATAAAGCACTAACTATTTTTTAAAATATATATTGGGCTAAATCAAATAAATATCAGAGTATTAGGAATTAAAATATATATTGGGCTGAATCAAAT

Coding sequence (CDS)

GAGGCAGTGAAATTGAAAGAAGAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAATCTCAGCCACTCCAGATGCCAAGGGAAATGCAGGTGAATTGGCAGTGAAGGACTCGAAATAG

Protein sequence

EAVKLKEETQAKKEEPAPKVEQTQAKKEEPAPKVEQTQISATPDAKGNAGELAVKDSK
Homology
[Close]
BLAST of Carg20128 vs. NCBI nr
Match: XP_022979881.1 (enolase-phosphatase E1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 7.2e-05
Identity = 35/58 (60.34%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 1   EAVKLKEETQAKKEEPAPKXXXXXXXXXXXXXXXXXXXXXXTPDAKGNAGELAVKDSK 59
           EAVKLKEETQAKKEEPAPK                      TPDAKGNA ELAVKDSK
Sbjct: 268 EAVKLKEETQAKKEEPAPK--------------VEQTQISATPDAKGNASELAVKDSK 311

[Close]
BLAST of Carg20128 vs. NCBI nr
Match: XP_022955420.1 (DNA ligase 1-like [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 9.4e-05
Identity = 34/58 (58.62%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 1   EAVKLKEETQAKKEEPAPKXXXXXXXXXXXXXXXXXXXXXXTPDAKGNAGELAVKDSK 59
           EAVKLKEETQAKKEEPAPK                      TPD+KGNAGELA KDSK
Sbjct: 264 EAVKLKEETQAKKEEPAPK--------------VEQTQISATPDSKGNAGELAAKDSK 307

The following BLAST results are available for this feature:
BLAST of Carg20128 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022979881.17.2e-0560.34enolase-phosphatase E1-like isoform X2 [Cucurbita maxima][more]
XP_022955420.19.4e-0558.62DNA ligase 1-like [Cucurbita moschata][more]
BLAST of Carg20128 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg20128 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg20128 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20128-RACarg20128-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20128Cp4.1LG03g11200Cucurbita pepo (Zucchini)carcpeB1164
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg20128Silver-seed gourdcarcarB087
Carg20128Silver-seed gourdcarcarB544
Carg20128Cucumber (Gy14) v2carcgybB0828
Carg20128Cucumber (Gy14) v1carcgyB0960
Carg20128Cucurbita maxima (Rimu)carcmaB1153
Carg20128Cucurbita maxima (Rimu)carcmaB1154
Carg20128Cucurbita maxima (Rimu)carcmaB1155
Carg20128Cucurbita maxima (Rimu)carcmaB1156
Carg20128Cucurbita moschata (Rifu)carcmoB1123
Carg20128Cucurbita moschata (Rifu)carcmoB1124
Carg20128Cucurbita moschata (Rifu)carcmoB1125
Carg20128Cucurbita moschata (Rifu)carcmoB1126
Carg20128Cucurbita pepo (Zucchini)carcpeB1163
Carg20128Cucurbita pepo (Zucchini)carcpeB1165
Carg20128Wild cucumber (PI 183967)carcpiB0874
Carg20128Cucumber (Chinese Long) v2carcuB0854
Carg20128Cucumber (Chinese Long) v3carcucB0878
Carg20128Bottle gourd (USVL1VR-Ls)carlsiB761
Carg20128Bottle gourd (USVL1VR-Ls)carlsiB760
Carg20128Melon (DHL92) v3.5.1carmeB0827
Carg20128Melon (DHL92) v3.5.1carmeB0828
Carg20128Melon (DHL92) v3.6.1carmedB0839
Carg20128Melon (DHL92) v3.6.1carmedB0840
Carg20128Watermelon (Charleston Gray)carwcgB0807
Carg20128Watermelon (Charleston Gray)carwcgB0808
Carg20128Watermelon (97103) v1carwmB0834
Carg20128Watermelon (97103) v1carwmB0835
Carg20128Watermelon (97103) v2carwmbB0867
Carg20128Watermelon (97103) v2carwmbB0868
Carg20128Wax gourdcarwgoB0972