Carg20128-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20128-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_168 : 300102 .. 301011 (-)
Sequence length	538

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGCAGTGAAATTGAAAGAAGAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAATCTCAGCCACTCCAGATGCCAAGGTAAGCTTGCTAATGATTCAGTAACTTGTAAATCTTATTATTATTGTTCATATTAATACTTAAAAAACGAGATTAAATCATAAGTTTAGTACATGAACTTTGACATTTCTAGTATATTTAGGCACAAATTTCAAACTTTCTGAATGAGAAAGTTATTGATAGGATGATCTAGTTTGACAAAACATTCAAATGAGAAAGTTATCGATATCATGATCTAGTTAGAACGTTCTGAAAAACAAGTTCTATAGATTGTCTACAAGTTTATACTTCTGATTGAGAAAGTTATTGATATGATGATCGAGTTAGAACGATATGAAAAATAAGGTCTATAGATTGGCTAAAAATTTATGGAACGGGGGCTTGTTAATGCAGGGAAATGCAGGTGAATTGGCAGTGAAGGACTCGAAATAGCACAAAAAAGTGCATTAGAAGGGGCATATGATGGCAGCTACTGGTAAATGATTTTGAGGCCAAATTGAAAGATGATTGGAGAAATAGTTATATATCTTTACACAGAAACACACACATATATATAAACCAATTTTTAACGATGTTGTAAAGATTATAGAATGTTTGATGATGACTTTAATTGTCTAAATAAGAACTCCGGTGGTTCATGATAACTTAAACTAAGACTTTTTATTACATGTAACTGTTCTGTTCGAATTTAAACCTTGATAAAGCACTAACTATTTTTTAAAATATATATTGGGCTAAATCAAATAAATATCAGAGTATTAGGAATTAAAATATATATTGGGCTGAATCAAAT

mRNA sequence

GAGGCAGTGAAATTGAAAGAAGAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAATCTCAGCCACTCCAGATGCCAAGGGAAATGCAGGTGAATTGGCAGTGAAGGACTCGAAATAGCACAAAAAAGTGCATTAGAAGGGGCATATGATGGCAGCTACTGGTAAATGATTTTGAGGCCAAATTGAAAGATGATTGGAGAAATAGTTATATATCTTTACACAGAAACACACACATATATATAAACCAATTTTTAACGATGTTGTAAAGATTATAGAATGTTTGATGATGACTTTAATTGTCTAAATAAGAACTCCGGTGGTTCATGATAACTTAAACTAAGACTTTTTATTACATGTAACTGTTCTGTTCGAATTTAAACCTTGATAAAGCACTAACTATTTTTTAAAATATATATTGGGCTAAATCAAATAAATATCAGAGTATTAGGAATTAAAATATATATTGGGCTGAATCAAAT

Coding sequence (CDS)

GAGGCAGTGAAATTGAAAGAAGAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAGCTAAGAAGGAAGAACCAGCTCCAAAAGTTGAACAAACCCAAATCTCAGCCACTCCAGATGCCAAGGGAAATGCAGGTGAATTGGCAGTGAAGGACTCGAAATAG

Protein sequence

EAVKLKEETQAKKEEPAPKVEQTQAKKEEPAPKVEQTQISATPDAKGNAGELAVKDSK

Homology

[Close]

BLAST of Carg20128-RA vs. NCBI nr
Match: XP_022979881.1 (enolase-phosphatase E1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 7.2e-05
Identity = 35/58 (60.34%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1   EAVKLKEETQAKKEEPAPKXXXXXXXXXXXXXXXXXXXXXXTPDAKGNAGELAVKDSK 59
           EAVKLKEETQAKKEEPAPK                      TPDAKGNA ELAVKDSK
Sbjct: 268 EAVKLKEETQAKKEEPAPK--------------VEQTQISATPDAKGNASELAVKDSK 311

[Close]

BLAST of Carg20128-RA vs. NCBI nr
Match: XP_022955420.1 (DNA ligase 1-like [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 9.4e-05
Identity = 34/58 (58.62%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1   EAVKLKEETQAKKEEPAPKXXXXXXXXXXXXXXXXXXXXXXTPDAKGNAGELAVKDSK 59
           EAVKLKEETQAKKEEPAPK                      TPD+KGNAGELA KDSK
Sbjct: 264 EAVKLKEETQAKKEEPAPK--------------VEQTQISATPDSKGNAGELAAKDSK 307

The following BLAST results are available for this feature:

BLAST of Carg20128-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979881.1	7.2e-05	60.34	enolase-phosphatase E1-like isoform X2 [Cucurbita maxima]	[more]
XP_022955420.1	9.4e-05	58.62	DNA ligase 1-like [Cucurbita moschata]	[more]

BLAST of Carg20128-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20128-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20128-RA vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20128	Carg20128	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20128-RA.three_prime_UTR.1	Carg20128-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20128-RA.CDS.2	Carg20128-RA.CDS.2	CDS
Carg20128-RA.CDS.1	Carg20128-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20128-RA.exon.2	Carg20128-RA.exon.2	exon
Carg20128-RA.exon.1	Carg20128-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20128-RA	Carg20128-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33