Carg19768 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19768
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transport and Golgi organization 2 homolog
Location	Cucurbita_argyrosperma_scaffold_143 : 224058 .. 224954 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCGATTGGAGCAATATTCTGTAAAATGAAGGATCAGCTCGCGTAGGGTCGTCGAATCTTCACTATCGGTTTGTCGGTTCGATTTCATCATGTGCATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGTCCGTCCAATTTTAATTACGTTCCTTTTCATTTTCTTGGGGGAATCGATCGATAGATTCAGACTTCGTAAAATCTCTTTGGTTTTCCCTTTTCAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGGTAAAGTGAATTTGGGTATGATTAGTTTCATAAAATTACTTTGAAAAATCATTGTTGTGCAGTGTTGTTACATCGAGATTAGTAATCTAGAGGAACAAACTGGAACTTGAATTCGTTGAAACGCCTGATTAACCTGTTTTGGTTGATTAAGTCTGCTTGAGTTATATATAGGAATATTATGCGTATGGAGGTACTGCTTCATGCAGGACCTTGTGTGTAACCAAGAAGGAGCTGTTGGTTTTGTTTTACGGTGCTGTGTACTCGTGAATAACAAATACTGTGAGATCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGAGTTTTAGAAACCTTGAGGAGAAGCCCGAAAGGGAAAACCTAAAGAGGACAATATCTACTAGTGGTGGGTTTGGGCTGTTACAAATGGTAT

mRNA sequence

TGGCGATTGGAGCAATATTCTGTAAAATGAAGGATCAGCTCGCGTAGGGTCGTCGAATCTTCACTATCGGTTTGTCGGTTCGATTTCATCATGTGCATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGGTAAAGTGAATTTGGGTATGATTAGTTTCATAAAATTACTTTGAAAAATCATTGTTGTGCAGTGTTGTTACATCGAGATTAGTAATCTAGAGGAACAAACTGGAACTTGAATTCGTTGAAACGCCTGATTAACCTGTTTTGGTTGATTAAGTCTGCTTGAGTTATATATAGGAATATTATGCGTATGGAGGTACTGCTTCATGCAGGACCTTGTGTGTAACCAAGAAGGAGCTGTTGGTTTTGTTTTACGGTGCTGTGTACTCGTGAATAACAAATACTGTGAGATCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGAGTTTTAGAAACCTTGAGGAGAAGCCCGAAAGGGAAAACCTAAAGAGGACAATATCTACTAGTGGTGGGTTTGGGCTGTTACAAATGGTAT

Coding sequence (CDS)

ATGTGCATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGGTAAAGTGA

Protein sequence

MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNGRVAFLTNFREVELLPQAKSRGELPVRFLKVK

Homology

[Close]

BLAST of Carg19768 vs. NCBI nr
Match: XP_022947387.1 (transport and Golgi organization protein 2 homolog [Cucurbita moschata] >XP_022947388.1 transport and Golgi organization protein 2 homolog [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 2.4e-47
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG
Sbjct: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAFLTNFREVELLPQAKSRGELPVRFLK K
Sbjct: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKSK 91

[Close]

BLAST of Carg19768 vs. NCBI nr
Match: XP_022971076.1 (transport and Golgi organization protein 2 homolog [Cucurbita maxima] >XP_022971077.1 transport and Golgi organization protein 2 homolog [Cucurbita maxima])

HSP 1 Score: 197.2 bits (500), Expect = 2.4e-47
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG
Sbjct: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAFLTNFREVELLPQAKSRGELPVRFLK K
Sbjct: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKSK 91

[Close]

BLAST of Carg19768 vs. NCBI nr
Match: XP_023532494.1 (transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo] >XP_023532495.1 transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo] >XP_023532496.1 transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 5.3e-47
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIAAFLWQAHP+YPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG
Sbjct: 1  MCIAAFLWQAHPVYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAFLTNFREVELLPQAKSRGELPVRFLK K
Sbjct: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKSK 91

[Close]

BLAST of Carg19768 vs. NCBI nr
Match: XP_022140668.1 (transport and Golgi organization 2 homolog [Momordica charantia])

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-43
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIAAFLWQAHPLYPFFLLLNRDEY +RPTKPLEWWEC +ILGGRDGLAGGTWLACSRNG
Sbjct: 1  MCIAAFLWQAHPLYPFFLLLNRDEYRTRPTKPLEWWECGDILGGRDGLAGGTWLACSRNG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAF+TNFREV+ LPQAKSRGELPVRFLK K
Sbjct: 61 RVAFVTNFREVQSLPQAKSRGELPVRFLKSK 91

[Close]

BLAST of Carg19768 vs. NCBI nr
Match: XP_018829327.1 (PREDICTED: transport and Golgi organization 2 homolog [Juglans regia])

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38
Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIAAFLWQAHPLYP  +LLNRDEYH+RPT+PLEWWE  EILGGRD +AGGTWLACSRNG
Sbjct: 1  MCIAAFLWQAHPLYPLVILLNRDEYHNRPTRPLEWWEGGEILGGRDEMAGGTWLACSRNG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAFLTN RE++ LP+AKSRG+LPVRFL+ K
Sbjct: 61 RVAFLTNVREIQKLPEAKSRGDLPVRFLQSK 91

[Close]

BLAST of Carg19768 vs. TAIR10
Match: AT4G38260.1 (Protein of unknown function (DUF833))

HSP 1 Score: 136.7 bits (343), Expect = 7.0e-33
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIA FLWQ+HPLYPF L LNRDE H+R T+ L WWE  E +GGRD + GGTWL C+R+G
Sbjct: 1  MCIAVFLWQSHPLYPFLLFLNRDEDHNRATEALRWWEDGETVGGRDLVGGGTWLGCTRHG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLK 90
          R+AFLTNF+E    P AKSRG+LP+R+L+
Sbjct: 61 RLAFLTNFKEASSFPAAKSRGDLPLRYLQ 89

[Close]

BLAST of Carg19768 vs. TAIR10
Match: AT1G20730.1 (Protein of unknown function (DUF833))

HSP 1 Score: 44.3 bits (103), Expect = 4.7e-05
Identity = 27/66 (40.91%), Postives = 33/66 (50.00%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEW-WECNEILGGRDGLAGGTWLACSRN 60
          M I AF W         LL NR+ + SR      W W+ +++L GR     GTWL  S  
Sbjct: 1  MGIVAFQW-GEGENILTLLQNRENWQSRSIGKAAWEWDESQVLSGRCAETDGTWLGISIR 60

Query: 61 GRVAFL 66
          GRVAFL
Sbjct: 61 GRVAFL 65

[Close]

BLAST of Carg19768 vs. Swiss-Prot
Match: sp|Q6ICL3|TNG2_HUMAN (Transport and Golgi organization protein 2 homolog OS=Homo sapiens OX=9606 GN=TANGO2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-13
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MCIAAFLWQAHPL----YPFFLLLNRDEYHSRPTKPLEWW-ECNEILGGRD---GLAGGT 60
          MCI  F +   P+    Y   L  NRDE++SRP+K  ++W   NEIL G D   G  GGT
Sbjct: 1  MCIIFFKFDPRPVSKNAYRLILAANRDEFYSRPSKLADFWGNNNEILSGLDMEEGKEGGT 60

Query: 61 WLACSRNGRVAFLTNFREVELLPQAKSRGELPVRFL 89
          WL  S  G++A LTN+ + +L  QA+ RGEL   FL
Sbjct: 61 WLGISTRGKLAALTNYLQPQLDWQARGRGELVTHFL 96

[Close]

BLAST of Carg19768 vs. Swiss-Prot
Match: sp|P54797|TNG2_MOUSE (Transport and Golgi organization 2 homolog OS=Mus musculus OX=10090 GN=Tango2 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-12
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 1  MCIAAFLWQAHPL----YPFFLLLNRDEYHSRPTKPLEWWECN-EILGGRD---GLAGGT 60
          MCI  F +   P+    Y   L  NRDE+++RP+K  ++W  N EIL G D   G AGGT
Sbjct: 1  MCIIFFKFDPRPVSKNAYRLILAANRDEFYNRPSKLADFWGNNSEILSGLDMEEGKAGGT 60

Query: 61 WLACSRNGRVAFLTNFREVELLPQAKSRGELPVRFL 89
          WL  S  G++  LTN+ +    P A+ RGEL   FL
Sbjct: 61 WLGISTRGKLGALTNYLQPRQEPDARGRGELVSHFL 96

[Close]

BLAST of Carg19768 vs. Swiss-Prot
Match: sp|Q29RZ5|TNG2_BOVIN (Transport and Golgi organization protein 2 homolog OS=Bos taurus OX=9913 GN=TANGO2 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-12
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 1  MCIAAFLWQAHPL----YPFFLLLNRDEYHSRPTKPLEWW-ECNEILGGRD---GLAGGT 60
          MCI  F +   P+    Y   L  NRDE++ RP +  ++W   NE+L G D   G  GGT
Sbjct: 1  MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPARAADFWGSNNEVLSGLDMEEGKEGGT 60

Query: 61 WLACSRNGRVAFLTNFREVELLPQAKSRGELPVRFL 89
          WL  S  G++A LTN+ +  L   A+ RGEL  +FL
Sbjct: 61 WLGISTRGKLAALTNYLQPRLNRNARGRGELVAQFL 96

[Close]

BLAST of Carg19768 vs. TrEMBL
Match: tr|A0A2I4FCF1|A0A2I4FCF1_9ROSI (transport and Golgi organization 2 homolog OS=Juglans regia OX=51240 GN=LOC108997471 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIAAFLWQAHPLYP  +LLNRDEYH+RPT+PLEWWE  EILGGRD +AGGTWLACSRNG
Sbjct: 1  MCIAAFLWQAHPLYPLVILLNRDEYHNRPTRPLEWWEGGEILGGRDEMAGGTWLACSRNG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAFLTN RE++ LP+AKSRG+LPVRFL+ K
Sbjct: 61 RVAFLTNVREIQKLPEAKSRGDLPVRFLQSK 91

[Close]

BLAST of Carg19768 vs. TrEMBL
Match: tr|A0A2N9FED1|A0A2N9FED1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13380 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.7e-38
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1   MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
           MCIA FLWQAHPLYP  LLLNRDEYHSRPT+ LEWWE +EILGGRD LAGGTWLACSR+G
Sbjct: 66  MCIAVFLWQAHPLYPLILLLNRDEYHSRPTRQLEWWEGDEILGGRDELAGGTWLACSRDG 125

Query: 61  RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
           RVAFLTN REV+ LP+AKSRG+LPVRFL+ K
Sbjct: 126 RVAFLTNVREVQSLPEAKSRGDLPVRFLQSK 156

[Close]

BLAST of Carg19768 vs. TrEMBL
Match: tr|A0A2P5B8D7|A0A2P5B8D7_PARAD (Transport and Golgi organization protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261740 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-36
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIA FLWQAHPL+PFFLLLNRDEYHSRPT+ L WW+  EILGG+DGLAGGTWLAC R+G
Sbjct: 1  MCIAVFLWQAHPLFPFFLLLNRDEYHSRPTEGLAWWKGEEILGGKDGLAGGTWLACGRDG 60

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          ++AFLTN RE+ LLPQAK+RG+LP+RFL+ +
Sbjct: 61 KMAFLTNVRELHLLPQAKTRGDLPLRFLRAR 91

[Close]

BLAST of Carg19768 vs. TrEMBL
Match: tr|A0A2P4LUZ7|A0A2P4LUZ7_QUESU (Transport and golgi organization 2 like OS=Quercus suber OX=58331 GN=CFP56_33047 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-36
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIA FLW+AHPLYP  LLLNRDEYHSRPT+ LEWW+  EILGGRD LAGGTWLACSR+G
Sbjct: 8  MCIAVFLWRAHPLYPLILLLNRDEYHSRPTRQLEWWDGGEILGGRDELAGGTWLACSRDG 67

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAFLTN REV+ LP AKSRG+LP RFL+ K
Sbjct: 68 RVAFLTNVREVKCLPDAKSRGDLPSRFLQSK 98

[Close]

BLAST of Carg19768 vs. TrEMBL
Match: tr|A0A2P4JWK8|A0A2P4JWK8_QUESU (Transport and golgi organization 2 like OS=Quercus suber OX=58331 GN=CFP56_55373 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-36
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1  MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNG 60
          MCIA FLW+AHPLYP  LLLNRDEYHSRPT+ LEWW+  EILGGRD LAGGTWLACSR+G
Sbjct: 8  MCIAVFLWRAHPLYPLILLLNRDEYHSRPTRQLEWWDGGEILGGRDELAGGTWLACSRDG 67

Query: 61 RVAFLTNFREVELLPQAKSRGELPVRFLKVK 92
          RVAFLTN REV+ LP AKSRG+LP RFL+ K
Sbjct: 68 RVAFLTNVREVKCLPDAKSRGDLPSRFLQSK 98

The following BLAST results are available for this feature:

BLAST of Carg19768 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947387.1	2.4e-47	98.90	transport and Golgi organization protein 2 homolog [Cucurbita moschata] >XP_0229...	[more]
XP_022971076.1	2.4e-47	98.90	transport and Golgi organization protein 2 homolog [Cucurbita maxima] >XP_022971...	[more]
XP_023532494.1	5.3e-47	97.80	transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo] ...	[more]
XP_022140668.1	1.2e-43	91.21	transport and Golgi organization 2 homolog [Momordica charantia]	[more]
XP_018829327.1	1.6e-38	81.32	PREDICTED: transport and Golgi organization 2 homolog [Juglans regia]	[more]

BLAST of Carg19768 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38260.1	7.0e-33	65.17	Protein of unknown function (DUF833)	[more]
AT1G20730.1	4.7e-05	40.91	Protein of unknown function (DUF833)	[more]

BLAST of Carg19768 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6ICL3\|TNG2_HUMAN	3.4e-13	44.79	Transport and Golgi organization protein 2 homolog OS=Homo sapiens OX=9606 GN=TA...	[more]
sp\|P54797\|TNG2_MOUSE	2.2e-12	42.71	Transport and Golgi organization 2 homolog OS=Mus musculus OX=10090 GN=Tango2 PE...	[more]
sp\|Q29RZ5\|TNG2_BOVIN	6.5e-12	40.63	Transport and Golgi organization protein 2 homolog OS=Bos taurus OX=9913 GN=TANG...	[more]

BLAST of Carg19768 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4FCF1\|A0A2I4FCF1_9ROSI	1.0e-38	81.32	transport and Golgi organization 2 homolog OS=Juglans regia OX=51240 GN=LOC10899...	[more]
tr\|A0A2N9FED1\|A0A2N9FED1_FAGSY	6.7e-38	82.42	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13380 PE=4 SV=1	[more]
tr\|A0A2P5B8D7\|A0A2P5B8D7_PARAD	1.6e-36	75.82	Transport and Golgi organization protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
tr\|A0A2P4LUZ7\|A0A2P4LUZ7_QUESU	4.8e-36	79.12	Transport and golgi organization 2 like OS=Quercus suber OX=58331 GN=CFP56_33047...	[more]
tr\|A0A2P4JWK8\|A0A2P4JWK8_QUESU	4.8e-36	79.12	Transport and golgi organization 2 like OS=Quercus suber OX=58331 GN=CFP56_55373...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008551	TANGO2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19768-RA	Carg19768-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008551	Transport and Golgi organisation protein 2	PFAM	PF05742	TANGO2	coord: 1..89 e-value: 8.5E-34 score: 117.6
IPR008551	Transport and Golgi organisation protein 2	PANTHER	PTHR17985	SER/THR-RICH PROTEIN T10 IN DGCR REGION	coord: 1..90
None	No IPR available	PANTHER	PTHR17985:SF16	SUBFAMILY NOT NAMED	coord: 1..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19768	CmaCh02G002990	Cucurbita maxima (Rimu)	carcmaB1187
Carg19768	CmoCh02G002940	Cucurbita moschata (Rifu)	carcmoB1156
Carg19768	Lsi10G008300	Bottle gourd (USVL1VR-Ls)	carlsiB778
Carg19768	Cp4.1LG05g13430	Cucurbita pepo (Zucchini)	carcpeB1194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19768	Silver-seed gourd	carcarB237
Carg19768	Silver-seed gourd	carcarB376
Carg19768	Silver-seed gourd	carcarB631
Carg19768	Cucumber (Gy14) v2	carcgybB0845
Carg19768	Cucumber (Gy14) v2	carcgybB0846
Carg19768	Cucumber (Gy14) v1	carcgyB0973
Carg19768	Cucumber (Gy14) v1	carcgyB0974
Carg19768	Cucurbita maxima (Rimu)	carcmaB1181
Carg19768	Cucurbita maxima (Rimu)	carcmaB1183
Carg19768	Cucurbita maxima (Rimu)	carcmaB1186
Carg19768	Cucurbita moschata (Rifu)	carcmoB1150
Carg19768	Cucurbita moschata (Rifu)	carcmoB1152
Carg19768	Cucurbita moschata (Rifu)	carcmoB1155
Carg19768	Cucurbita pepo (Zucchini)	carcpeB1190
Carg19768	Cucurbita pepo (Zucchini)	carcpeB1189
Carg19768	Cucurbita pepo (Zucchini)	carcpeB1193
Carg19768	Wild cucumber (PI 183967)	carcpiB0891
Carg19768	Cucumber (Chinese Long) v2	carcuB0871
Carg19768	Cucumber (Chinese Long) v2	carcuB0872
Carg19768	Cucumber (Chinese Long) v3	carcucB0896
Carg19768	Bottle gourd (USVL1VR-Ls)	carlsiB779
Carg19768	Melon (DHL92) v3.5.1	carmeB0843
Carg19768	Melon (DHL92) v3.6.1	carmedB0854
Carg19768	Watermelon (Charleston Gray)	carwcgB0827
Carg19768	Watermelon (Charleston Gray)	carwcgB0828
Carg19768	Watermelon (97103) v1	carwmB0854
Carg19768	Watermelon (97103) v1	carwmB0855
Carg19768	Watermelon (97103) v2	carwmbB0890
Carg19768	Watermelon (97103) v2	carwmbB0891
Carg19768	Watermelon (97103) v2	carwmbB0892
Carg19768	Wax gourd	carwgoB0995
Carg19768	Wax gourd	carwgoB0998