Carg19768-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGCGATTGGAGCAATATTCTGTAAAATGAAGGATCAGCTCGCGTAGGGTCGTCGAATCTTCACTATCGGTTTGTCGGTTCGATTTCATCATGTGCATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGTCCGTCCAATTTTAATTACGTTCCTTTTCATTTTCTTGGGGGAATCGATCGATAGATTCAGACTTCGTAAAATCTCTTTGGTTTTCCCTTTTCAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGGTAAAGTGAATTTGGGTATGATTAGTTTCATAAAATTACTTTGAAAAATCATTGTTGTGCAGTGTTGTTACATCGAGATTAGTAATCTAGAGGAACAAACTGGAACTTGAATTCGTTGAAACGCCTGATTAACCTGTTTTGGTTGATTAAGTCTGCTTGAGTTATATATAGGAATATTATGCGTATGGAGGTACTGCTTCATGCAGGACCTTGTGTGTAACCAAGAAGGAGCTGTTGGTTTTGTTTTACGGTGCTGTGTACTCGTGAATAACAAATACTGTGAGATCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGAGTTTTAGAAACCTTGAGGAGAAGCCCGAAAGGGAAAACCTAAAGAGGACAATATCTACTAGTGGTGGGTTTGGGCTGTTACAAATGGTAT TGGCGATTGGAGCAATATTCTGTAAAATGAAGGATCAGCTCGCGTAGGGTCGTCGAATCTTCACTATCGGTTTGTCGGTTCGATTTCATCATGTGCATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGGTAAAGTGAATTTGGGTATGATTAGTTTCATAAAATTACTTTGAAAAATCATTGTTGTGCAGTGTTGTTACATCGAGATTAGTAATCTAGAGGAACAAACTGGAACTTGAATTCGTTGAAACGCCTGATTAACCTGTTTTGGTTGATTAAGTCTGCTTGAGTTATATATAGGAATATTATGCGTATGGAGGTACTGCTTCATGCAGGACCTTGTGTGTAACCAAGAAGGAGCTGTTGGTTTTGTTTTACGGTGCTGTGTACTCGTGAATAACAAATACTGTGAGATCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGAGTTTTAGAAACCTTGAGGAGAAGCCCGAAAGGGAAAACCTAAAGAGGACAATATCTACTAGTGGTGGGTTTGGGCTGTTACAAATGGTAT ATGTGCATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGGTAAAGTGA MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNGRVAFLTNFREVELLPQAKSRGELPVRFLKVK
BLAST of Carg19768-RA vs. NCBI nr
Match: XP_022947387.1 (transport and Golgi organization protein 2 homolog [Cucurbita moschata] >XP_022947388.1 transport and Golgi organization protein 2 homolog [Cucurbita moschata]) HSP 1 Score: 197.2 bits (500), Expect = 2.4e-47 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg19768-RA vs. NCBI nr
Match: XP_022971076.1 (transport and Golgi organization protein 2 homolog [Cucurbita maxima] >XP_022971077.1 transport and Golgi organization protein 2 homolog [Cucurbita maxima]) HSP 1 Score: 197.2 bits (500), Expect = 2.4e-47 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg19768-RA vs. NCBI nr
Match: XP_023532494.1 (transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo] >XP_023532495.1 transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo] >XP_023532496.1 transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 196.1 bits (497), Expect = 5.3e-47 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg19768-RA vs. NCBI nr
Match: XP_022140668.1 (transport and Golgi organization 2 homolog [Momordica charantia]) HSP 1 Score: 184.9 bits (468), Expect = 1.2e-43 Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Carg19768-RA vs. NCBI nr
Match: XP_018829327.1 (PREDICTED: transport and Golgi organization 2 homolog [Juglans regia]) HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38 Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 0
BLAST of Carg19768-RA vs. TAIR10
Match: AT4G38260.1 (Protein of unknown function (DUF833)) HSP 1 Score: 136.7 bits (343), Expect = 7.0e-33 Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 0
BLAST of Carg19768-RA vs. TAIR10
Match: AT1G20730.1 (Protein of unknown function (DUF833)) HSP 1 Score: 44.3 bits (103), Expect = 4.7e-05 Identity = 27/66 (40.91%), Postives = 33/66 (50.00%), Query Frame = 0
BLAST of Carg19768-RA vs. Swiss-Prot
Match: sp|Q6ICL3|TNG2_HUMAN (Transport and Golgi organization protein 2 homolog OS=Homo sapiens OX=9606 GN=TANGO2 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 3.4e-13 Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 0
BLAST of Carg19768-RA vs. Swiss-Prot
Match: sp|P54797|TNG2_MOUSE (Transport and Golgi organization 2 homolog OS=Mus musculus OX=10090 GN=Tango2 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 2.2e-12 Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg19768-RA vs. Swiss-Prot
Match: sp|Q29RZ5|TNG2_BOVIN (Transport and Golgi organization protein 2 homolog OS=Bos taurus OX=9913 GN=TANGO2 PE=2 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 6.5e-12 Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0
BLAST of Carg19768-RA vs. TrEMBL
Match: tr|A0A2I4FCF1|A0A2I4FCF1_9ROSI (transport and Golgi organization 2 homolog OS=Juglans regia OX=51240 GN=LOC108997471 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38 Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 0
BLAST of Carg19768-RA vs. TrEMBL
Match: tr|A0A2N9FED1|A0A2N9FED1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13380 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 6.7e-38 Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 0
BLAST of Carg19768-RA vs. TrEMBL
Match: tr|A0A2P5B8D7|A0A2P5B8D7_PARAD (Transport and Golgi organization protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261740 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 1.6e-36 Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 0
BLAST of Carg19768-RA vs. TrEMBL
Match: tr|A0A2P4LUZ7|A0A2P4LUZ7_QUESU (Transport and golgi organization 2 like OS=Quercus suber OX=58331 GN=CFP56_33047 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.8e-36 Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Carg19768-RA vs. TrEMBL
Match: tr|A0A2P4JWK8|A0A2P4JWK8_QUESU (Transport and golgi organization 2 like OS=Quercus suber OX=58331 GN=CFP56_55373 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.8e-36 Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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