Carg19543 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19543
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_104 : 350958 .. 351614 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTCGCCTCCTCCTCCACCTCTACCTTAATCAAGGATTCCAAATCCACTAAATCCGTCGTCGACGAAACCGCACGCTCCCGGAGTCGCCGCAAGCTCTGCATCGGAGTCTCCGTCGCCGTCGCCGTCGTCCTCCTCGTCGTCGTTATAATCGTCATTTTAGCATTCACGGTGTTCAAGCCAAAGCGACCTATCACCACCATCAATTCCGTCTCCATTGACGATTTCGACATGTCGCTAAGCGTATTCAGAACCTCTGTCGATTTCAACATCACTCTGGTTGCCGATGTCGCTATTACGAACCCTAACAAGGTCGGATTTAGCTACTCGAATAGCACCGTGTTTTTCAATTACAGAGGCGAACTGGTTGCCGAGGTGCCGATTCTGGCCGCGGAAATCGATGCAGGTCAGACCACGCAGATGAACATTACGTTGAGGATTTTGGCAGATCGGTTTGTGAAAACGTCGACGGTTTTCTACGACGTCGTAGCTGGATCGATGCCGTTGAATGCGTACGCGAGAGTTTCAGGTAAGGTGATGATTTTGGGGATTTTCAATATTCATATGGTTTCTACAACATCGTGTGATTTCAGTATTAACGTATCGGAGAGGAATATTAAAGATCAACGGTGTAATTACCATACTAAGATCTAA

mRNA sequence

ATGGAAGTCGCCTCCTCCTCCACCTCTACCTTAATCAAGGATTCCAAATCCACTAAATCCGTCGTCGACGAAACCGCACGCTCCCGGAGTCGCCGCAAGCTCTGCATCGGAGTCTCCGTCGCCGTCGCCGTCGTCCTCCTCGTCGTCGTTATAATCGTCATTTTAGCATTCACGGTGTTCAAGCCAAAGCGACCTATCACCACCATCAATTCCGTCTCCATTGACGATTTCGACATGTCGCTAAGCGTATTCAGAACCTCTGTCGATTTCAACATCACTCTGGTTGCCGATGTCGCTATTACGAACCCTAACAAGGTCGGATTTAGCTACTCGAATAGCACCGTGTTTTTCAATTACAGAGGCGAACTGGTTGCCGAGGTGCCGATTCTGGCCGCGGAAATCGATGCAGGTCAGACCACGCAGATGAACATTACGTTGAGGATTTTGGCAGATCGGTTTGTGAAAACGTCGACGGTTTTCTACGACGTCGTAGCTGGATCGATGCCGTTGAATGCGTACGCGAGAGTTTCAGGTAAGGTGATGATTTTGGGGATTTTCAATATTCATATGGTTTCTACAACATCGTGTGATTTCAGTATTAACGTATCGGAGAGGAATATTAAAGATCAACGGTGTAATTACCATACTAAGATCTAA

Coding sequence (CDS)

ATGGAAGTCGCCTCCTCCTCCACCTCTACCTTAATCAAGGATTCCAAATCCACTAAATCCGTCGTCGACGAAACCGCACGCTCCCGGAGTCGCCGCAAGCTCTGCATCGGAGTCTCCGTCGCCGTCGCCGTCGTCCTCCTCGTCGTCGTTATAATCGTCATTTTAGCATTCACGGTGTTCAAGCCAAAGCGACCTATCACCACCATCAATTCCGTCTCCATTGACGATTTCGACATGTCGCTAAGCGTATTCAGAACCTCTGTCGATTTCAACATCACTCTGGTTGCCGATGTCGCTATTACGAACCCTAACAAGGTCGGATTTAGCTACTCGAATAGCACCGTGTTTTTCAATTACAGAGGCGAACTGGTTGCCGAGGTGCCGATTCTGGCCGCGGAAATCGATGCAGGTCAGACCACGCAGATGAACATTACGTTGAGGATTTTGGCAGATCGGTTTGTGAAAACGTCGACGGTTTTCTACGACGTCGTAGCTGGATCGATGCCGTTGAATGCGTACGCGAGAGTTTCAGGTAAGGTGATGATTTTGGGGATTTTCAATATTCATATGGTTTCTACAACATCGTGTGATTTCAGTATTAACGTATCGGAGAGGAATATTAAAGATCAACGGTGTAATTACCATACTAAGATCTAA

Protein sequence

MEVASSSTSTLIKDSKSTKSVVDETARSRSRRKLCIGVSVAVAVVLLVVVIIVILAFTVFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFNYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVSGKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI

Homology

[Close]

BLAST of Carg19543 vs. NCBI nr
Match: XP_023544036.1 (uncharacterized protein LOC111803737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 207/218 (94.95%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MEVASSSTSTLIKDSKSTKSVVDETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVF 60
           MEVASSSTSTLIKD KSTKSVVDETA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVF
Sbjct: 1   MEVASSSTSTLIKDFKSTKSVVDETARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVF 60

Query: 61  KPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFNYR 120
           KPKRPITTINSVSIDDFD+SLSV RTSVDFNITLVADVAITNPNKVGFSYSNST FFNYR
Sbjct: 61  KPKRPITTINSVSIDDFDLSLSVVRTSVDFNITLVADVAITNPNKVGFSYSNSTAFFNYR 120

Query: 121 GELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVSGKV 180
           GELV EVPILAA+IDAGQTTQMNITLRILADRFVKTSTVF+DVVAGSMPLNAYARVSGKV
Sbjct: 121 GELVGEVPILAAQIDAGQTTQMNITLRILADRFVKTSTVFFDVVAGSMPLNAYARVSGKV 180

Query: 181 MILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
            ILGIFNIHMVSTTSCDFSIN+SERNIKDQ+CNYHTKI
Sbjct: 181 RILGIFNIHMVSTTSCDFSINISERNIKDQQCNYHTKI 218

[Close]

BLAST of Carg19543 vs. NCBI nr
Match: XP_022977374.1 (uncharacterized protein LOC111477726 [Cucurbita maxima])

HSP 1 Score: 320.9 bits (821), Expect = 3.4e-84
Identity = 195/218 (89.45%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 1   MEVASSSTSTLIKDSKSTKSVVDETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVF 60
           MEVASSSTSTLIKDSKSTKSVVD TA   X      XXXXXXXXXXXXXXXXXXXXX   
Sbjct: 1   MEVASSSTSTLIKDSKSTKSVVDATASSRXRRNLCIXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  KPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFNYR 120
           KPKRPITTINSVSIDDFDMSLSV RTSVDFNITL+ADVAITNPNKVGFSYSNST FFNYR
Sbjct: 61  KPKRPITTINSVSIDDFDMSLSVVRTSVDFNITLIADVAITNPNKVGFSYSNSTAFFNYR 120

Query: 121 GELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVSGKV 180
           GELV EVPILAA+IDAGQTTQMNI LRILADRFVKTSTVF+DVVAGSMPLNAYA+VSGKV
Sbjct: 121 GELVGEVPILAAQIDAGQTTQMNIRLRILADRFVKTSTVFFDVVAGSMPLNAYAKVSGKV 180

Query: 181 MILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           MILGIFNIHMVSTTSCDFSIN+SERNIKDQ+CNYHTKI
Sbjct: 181 MILGIFNIHMVSTTSCDFSINISERNIKDQQCNYHTKI 218

[Close]

BLAST of Carg19543 vs. NCBI nr
Match: XP_022950379.1 (uncharacterized protein LOC111453494 [Cucurbita moschata])

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 155/161 (96.27%), Postives = 158/161 (98.14%), Query Frame = 0


Query: 58  TVFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFF 117
           TVFKPKRPITTINSVSIDDFDMSLSV RTSVDFNITLVADVAITNPNKVGFSYSNST FF
Sbjct: 58  TVFKPKRPITTINSVSIDDFDMSLSVVRTSVDFNITLVADVAITNPNKVGFSYSNSTAFF 117

Query: 118 NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVS 177
           NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVF+DVVAGSMPLNAYARVS
Sbjct: 118 NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFFDVVAGSMPLNAYARVS 177

Query: 178 GKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           GKV ILGIFNIHMVSTTSCDFSIN+SERNIKDQ+CNYHTKI
Sbjct: 178 GKVRILGIFNIHMVSTTSCDFSINISERNIKDQQCNYHTKI 218

[Close]

BLAST of Carg19543 vs. NCBI nr
Match: XP_004142665.1 (PREDICTED: uncharacterized protein LOC101208230 [Cucumis sativus] >KGN54479.1 hypothetical protein Csa_4G337360 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 5.2e-56
Identity = 154/218 (70.64%), Postives = 181/218 (83.03%), Query Frame = 0


Query: 1   MEVASSSTSTLIKDSKSTKSVVDETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVF 60
           ME+ASSS S+LIKD KST+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 1   MEIASSS-SSLIKDPKSTQ--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  KPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFNYR 120
             KRPITT+NSV++ D D+SL++   SVD N+TL+AD+AITNPNKVGFSY NST F NYR
Sbjct: 61  XAKRPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYR 120

Query: 121 GELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVSGKV 180
           GELV E PI+A +IDAG+  +MNITL I+ADR +KT+TVF D VAGSMPLN Y R+SGKV
Sbjct: 121 GELVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKV 180

Query: 181 MILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
            ILGIFNIH+VS+TSCDF++++SER I DQ+CNYHTKI
Sbjct: 181 KILGIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 215

[Close]

BLAST of Carg19543 vs. NCBI nr
Match: XP_022966458.1 (uncharacterized protein LOC111466106 [Cucurbita maxima])

HSP 1 Score: 217.2 bits (552), Expect = 5.4e-53
Identity = 105/161 (65.22%), Postives = 133/161 (82.61%), Query Frame = 0


Query: 58  TVFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFF 117
           TVFK KRPITTINSV++ D D+SL++ R++V  NITL+ DV+ITNPNKVGFSYSNST   
Sbjct: 44  TVFKAKRPITTINSVALADLDLSLNIARSAVGLNITLIVDVSITNPNKVGFSYSNSTALL 103

Query: 118 NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVS 177
           NYRGEL+ E PI +  I+A Q+ +MNIT+ I+ADR +++STV  DVVAGSMPLN Y R+S
Sbjct: 104 NYRGELIGEAPIPSGRINANQSKRMNITVTIMADRLLRSSTVLSDVVAGSMPLNTYTRIS 163

Query: 178 GKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           GKV ILGIF I +VS+TSCDF+I++S+R I DQ+C+YHTKI
Sbjct: 164 GKVRILGIFKIRVVSSTSCDFTIDISDRKIGDQQCSYHTKI 204

[Close]

BLAST of Carg19543 vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-38
Identity = 74/161 (45.96%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 58  TVFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFF 117
           T+FKPKRP TTI+SV++D    S++     V  N+TL  D+++ NPN++GFSY +S+   
Sbjct: 75  TLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALL 134

Query: 118 NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVS 177
           NYRG+++ E P+ A  I A +T  +NITL ++ADR +  + +  DV+AG +PLN + +V+
Sbjct: 135 NYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVT 194

Query: 178 GKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           GKV +L IF I + S++SCD SI+VS+RN+  Q C Y TK+
Sbjct: 195 GKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKYSTKL 235

[Close]

BLAST of Carg19543 vs. TAIR10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-18
Identity = 50/157 (31.85%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 58  TVFKPKRPITTINSVSIDDFDMSLSVFRTS-VDFNITLVADVAITNPNKVGFSYSNSTVF 117
           TVF+ K PI  +N V ++  D      +   +  NI+++ DV++ NPN   F YSN+T  
Sbjct: 59  TVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTD 118

Query: 118 FNYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVV-AGSMPLNAYAR 177
             Y+G LV E   L  +    +T++MN+T+ I+ DR +    +  ++  +G + + +Y R
Sbjct: 119 IYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSYTR 178

Query: 178 VSGKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRC 213
           V GKV I+GI   H+    +C  ++N++ + I+D  C
Sbjct: 179 VGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDC 215

[Close]

BLAST of Carg19543 vs. TAIR10
Match: AT3G05975.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-14
Identity = 46/161 (28.57%), Postives = 79/161 (49.07%), Query Frame = 0


Query: 59  VFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFN 118
           VFKPK PI    S ++D    ++S+    V  N TL  ++ + NPN   F Y        
Sbjct: 30  VFKPKHPILQTVSSTVDGISTNISL-PYEVQLNFTLTLEMLLKNPNVADFEYKTVENLVY 89

Query: 119 YRGELVAEVPILAAEIDAGQTTQMNITLRILADRFV-KTSTVFYDVVAGSMPLNAYARVS 178
           YR  LV  + + ++ + A  +  +   L +  D+FV     +  DV+ G + +   A++ 
Sbjct: 90  YRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKMP 149

Query: 179 GKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           GK+ +LGIF I + S + C+  +      ++DQ C+  TK+
Sbjct: 150 GKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLKTKL 189

[Close]

BLAST of Carg19543 vs. TAIR10
Match: AT1G64450.1 (Glycine-rich protein family)

HSP 1 Score: 45.1 bits (105), Expect = 6.6e-05
Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 60  FKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFNY 119
           FKPK P  ++N+V +  F +S +        N +    VA+ NPN+  FS+ +S++   Y
Sbjct: 41  FKPKDPKISVNAVQLPSFAVSNNT------ANFSFSQYVAVRNPNRAVFSHYDSSIQLLY 100

Query: 120 RGELVAEVPILAAEIDAGQTTQMNITLRI 149
            G  V  + I A +ID+G+   M  T  +
Sbjct: 101 SGNQVGFMFIPAGKIDSGRIQYMAATFTV 123

[Close]

BLAST of Carg19543 vs. TrEMBL
Match: tr|A0A0A0L094|A0A0A0L094_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337360 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.4e-56
Identity = 154/218 (70.64%), Postives = 181/218 (83.03%), Query Frame = 0


Query: 1   MEVASSSTSTLIKDSKSTKSVVDETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVF 60
           ME+ASSS S+LIKD KST+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 1   MEIASSS-SSLIKDPKSTQ--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  KPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFNYR 120
             KRPITT+NSV++ D D+SL++   SVD N+TL+AD+AITNPNKVGFSY NST F NYR
Sbjct: 61  XAKRPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYR 120

Query: 121 GELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVSGKV 180
           GELV E PI+A +IDAG+  +MNITL I+ADR +KT+TVF D VAGSMPLN Y R+SGKV
Sbjct: 121 GELVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKV 180

Query: 181 MILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
            ILGIFNIH+VS+TSCDF++++SER I DQ+CNYHTKI
Sbjct: 181 KILGIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 215

[Close]

BLAST of Carg19543 vs. TrEMBL
Match: tr|A0A1S3CJB5|A0A1S3CJB5_CUCME (uncharacterized protein LOC103501497 OS=Cucumis melo OX=3656 GN=LOC103501497 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.3e-50
Identity = 100/153 (65.36%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 66  ITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFFNYRGELVA 125
           ITT+NSV++                N+TL+A +AITNPNKVGFSY NST F NYRGELV 
Sbjct: 64  ITTVNSVALXXXXXXXXXXXXXXXXNVTLIAGIAITNPNKVGFSYKNSTAFLNYRGELVG 123

Query: 126 EVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVSGKVMILGI 185
           E PI+A +IDAG+  +MNITL I+ADR +KT+TVF DVVAGSMPLN YAR+SGKV ILGI
Sbjct: 124 EAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARISGKVKILGI 183

Query: 186 FNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           FNIH+VSTTSCDF++++SER + DQ+CNYHTKI
Sbjct: 184 FNIHVVSTTSCDFNVDISERKVGDQQCNYHTKI 216

[Close]

BLAST of Carg19543 vs. TrEMBL
Match: tr|A0A218W2N0|A0A218W2N0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr000477 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.6e-43
Identity = 85/161 (52.80%), Postives = 117/161 (72.67%), Query Frame = 0


Query: 58  TVFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFF 117
           TV+KPKRP+TT+N VS+ D D+SL V R  V+ N+TL   +++ NPNKVGF Y NS+   
Sbjct: 124 TVYKPKRPVTTVNGVSLKDLDVSLDVLRLRVNLNVTLDVALSVENPNKVGFRYKNSSARL 183

Query: 118 NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVS 177
           NYRG+LV E P+ A +I AG+T  MN+TL +LADRF+  S  + DV+AG +PLN Y ++S
Sbjct: 184 NYRGQLVGEAPLPADKISAGETKAMNLTLTLLADRFLSNSQAYGDVIAGELPLNTYTKIS 243

Query: 178 GKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           GKV ++ IF IH+VSTT+CD ++ VS R + +Q C Y TK+
Sbjct: 244 GKVTLMNIFRIHVVSTTTCDLTLLVSNRTVGNQHCKYKTKL 284

[Close]

BLAST of Carg19543 vs. TrEMBL
Match: tr|A0A2I4GX44|A0A2I4GX44_9ROSI (uncharacterized protein LOC109011627 OS=Juglans regia OX=51240 GN=LOC109011627 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.3e-43
Identity = 89/161 (55.28%), Postives = 116/161 (72.05%), Query Frame = 0


Query: 58  TVFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFF 117
           TVFK KRP+TT + V I D D+SL + R +VD N+TL  DV++ NPNKVGF YSNST   
Sbjct: 50  TVFKAKRPVTTFDDVGIKDLDLSLDIARLTVDLNVTLDVDVSVKNPNKVGFKYSNSTALL 109

Query: 118 NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVS 177
           NYRGELV EVP+LA +I AG+T  MN+ L I+ADR +  + ++ DV +G +PLN Y R+S
Sbjct: 110 NYRGELVGEVPLLAGDISAGETKHMNLLLTIMADRLLSNTEIYSDVTSGVLPLNTYIRLS 169

Query: 178 GKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           GKV I  +F IH VS++SCDF+I +S R I +Q C Y TK+
Sbjct: 170 GKVKIF-LFRIHAVSSSSCDFNIYISNRTIDNQGCKYKTKL 209

[Close]

BLAST of Carg19543 vs. TrEMBL
Match: tr|A0A1S3VXX5|A0A1S3VXX5_VIGRR (uncharacterized protein LOC106779604 OS=Vigna radiata var. radiata OX=3916 GN=LOC106779604 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.3e-43
Identity = 85/161 (52.80%), Postives = 115/161 (71.43%), Query Frame = 0


Query: 58  TVFKPKRPITTINSVSIDDFDMSLSVFRTSVDFNITLVADVAITNPNKVGFSYSNSTVFF 117
           TVFK K P T ++S  ++DF MSL + R  VD N+TL  DV++ NPNKVGF YS+ST   
Sbjct: 32  TVFKAKHPTTVVDSTKLEDFHMSLDIARLRVDLNVTLRTDVSVKNPNKVGFKYSDSTAHL 91

Query: 118 NYRGELVAEVPILAAEIDAGQTTQMNITLRILADRFVKTSTVFYDVVAGSMPLNAYARVS 177
           NYRG+L+ EVPI A EI +G+T   N+TL I+ADR +  S +F DV +G++PLN + R+S
Sbjct: 92  NYRGQLIGEVPIPAGEISSGETKGFNLTLTIMADRLLSNSQLFSDVTSGTLPLNTFVRIS 151

Query: 178 GKVMILGIFNIHMVSTTSCDFSINVSERNIKDQRCNYHTKI 219
           GKV ILG   +H+VS+TSCD +IN+S R + +Q C Y TK+
Sbjct: 152 GKVNILGFIKVHVVSSTSCDVAINISNRTVGNQECQYRTKL 192

The following BLAST results are available for this feature:

BLAST of Carg19543 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544036.1	2.2e-86	94.95	uncharacterized protein LOC111803737 [Cucurbita pepo subsp. pepo]	[more]
XP_022977374.1	3.4e-84	89.45	uncharacterized protein LOC111477726 [Cucurbita maxima]	[more]
XP_022950379.1	3.3e-79	96.27	uncharacterized protein LOC111453494 [Cucurbita moschata]	[more]
XP_004142665.1	5.2e-56	70.64	PREDICTED: uncharacterized protein LOC101208230 [Cucumis sativus] >KGN54479.1 hy...	[more]
XP_022966458.1	5.4e-53	65.22	uncharacterized protein LOC111466106 [Cucurbita maxima]	[more]

BLAST of Carg19543 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54200.1	1.2e-38	45.96	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	4.0e-18	31.85	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G05975.1	6.0e-14	28.57	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	6.6e-05	31.46	Glycine-rich protein family	[more]

BLAST of Carg19543 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19543 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L094\|A0A0A0L094_CUCSA	3.4e-56	70.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337360 PE=4 SV=1	[more]
tr\|A0A1S3CJB5\|A0A1S3CJB5_CUCME	6.3e-50	65.36	uncharacterized protein LOC103501497 OS=Cucumis melo OX=3656 GN=LOC103501497 PE=...	[more]
tr\|A0A218W2N0\|A0A218W2N0_PUNGR	2.6e-43	52.80	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr000477 PE=4 SV=1	[more]
tr\|A0A2I4GX44\|A0A2I4GX44_9ROSI	3.3e-43	55.28	uncharacterized protein LOC109011627 OS=Juglans regia OX=51240 GN=LOC109011627 P...	[more]
tr\|A0A1S3VXX5\|A0A1S3VXX5_VIGRR	3.3e-43	52.80	uncharacterized protein LOC106779604 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19543-RA	Carg19543-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 98..184 e-value: 3.0E-9 score: 37.2
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 16..217
None	No IPR available	PANTHER	PTHR31852:SF43	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 16..217
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 46..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19543	Cla012059	Watermelon (97103) v1	carwmB0626
Carg19543	Csa4G337360	Cucumber (Chinese Long) v2	carcuB0650
Carg19543	MELO3C025270	Melon (DHL92) v3.5.1	carmeB0627
Carg19543	ClCG04G006090	Watermelon (Charleston Gray)	carwcgB0609
Carg19543	CSPI04G16880	Wild cucumber (PI 183967)	carcpiB0660
Carg19543	Cucsa.130830	Cucumber (Gy14) v1	carcgyB0702
Carg19543	CmaCh07G011920	Cucurbita maxima (Rimu)	carcmaB0888
Carg19543	CmaCh03G002660	Cucurbita maxima (Rimu)	carcmaB0887
Carg19543	CmoCh07G012370	Cucurbita moschata (Rifu)	carcmoB0864
Carg19543	CmoCh03G002800	Cucurbita moschata (Rifu)	carcmoB0862
Carg19543	Lsi01G016430	Bottle gourd (USVL1VR-Ls)	carlsiB571
Carg19543	Cp4.1LG10g07250	Cucurbita pepo (Zucchini)	carcpeB0891
Carg19543	Cp4.1LG19g01710	Cucurbita pepo (Zucchini)	carcpeB0893
Carg19543	CsGy4G016180	Cucumber (Gy14) v2	carcgybB0626
Carg19543	MELO3C025270.2	Melon (DHL92) v3.6.1	carmedB0635
Carg19543	CsaV3_4G027470	Cucumber (Chinese Long) v3	carcucB0661
Carg19543	Cla97C04G072650	Watermelon (97103) v2	carwmbB0654
Carg19543	Bhi03G001799	Wax gourd	carwgoB0747

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19543	Carg12630	Silver-seed gourd	carcarB319

The following block(s) are covering this gene:

None