Carg19287 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19287
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 15-like isoform X1
Location	Cucurbita_argyrosperma_scaffold_137 : 164069 .. 165813 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAAGTAATATTCATTTATTCATCTTGATTTCTTCATTCCGTGGGCTTTCTGTTTAGCGTTGTTTGATGAAATTTTTCGTCTGTTGGGTTTTGTTTGCTATTGATTGCCTTTTGGGGATTTATTAGGGCTGGGTGTTTCTGATCTTAACTCCCGAGCAATGGGGTTTTTCCCCTTATTTCTTTATACATTGTAGCTATGGGAACGGACGAACATTTGGCTGGAACCACTGAAGTCATTAGAATACCTCGCCGATTCTTCTATGGCAAAGTCCTTCTTTCCTCCTAGTTTCTTTCAATTGGCTCCATTCCCAATTGAATGGTAGACAAAGACATTGTTGGGGACGTTTCCAGAGACGTTTCTCTTAAAATTCTTCTAGTTCTATAAACTGTAATTGAACTGATCATTCTTTTTTTTTCTTTTCTTTTCAAGTGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGGTTTGAAATTCAGCCTTATATTCCTTTTGTTTCAACGTTATTTTCTTGGGAAATTTTTATCTTTAATCATTCAATACTTGAGCTGTTGAAGTTTTCTTTGATTGAGCAAATATACTAGTAAACCACTAATCTTGTGAGATCCCACGTTCTTCATAAGAGCGTGGAAATCTCTCCCTAATAGACACGTTTTAAAACCTTGAAGGGAAGTCTAGAAGGAAAAACCCAAAAAGAACAATATTGCTAGCGTGGGCTTGAGCTGTTACAAATCTCGAGTAGTTGTCTATGAGCCAGGTGTCTGAAGTGGAGGTTTCTTCCATAACTAATAGTTTGCGTTTAAGCCCCCTTCTGCCTAGTGTCCAAATCTTTTAACCTTTTAATGTATACTTTTTGAAGTCCTCTTTCCATTGCATTCCATTTAGGCTTTGATTCTATCGTATAGCTTGGTCTCCTCTGTTGTGCCTTTCTAGCCTCCTCCTAGGCCAGACAAGTTTCAAATTAGCTACTATAATTTCTTGGAAAATTATTCTATGTGTCTGCCTCATAATAAGCGTTAAACGTGGATTCAAAACGAACCAAATTTGAGGTACTTCTCTCATAAATCCAATGTAAAAAACTGTCAGTTACATTGAATAATTTCTCTTCACTGTGACTCCGACATACACACACATATATATATACACGCACTGTGGACTTTTATTTGATTCCAGACTTGTAGCCTTCAATTATTCACCTGTGTTTACCACAAGATTATAAGGAGTATAATATAGCAGGTCTGGCTTTTGGCTGGCAGTTTATTTCTGATGGTTATACTAATATCCAGGATTGTAAGGGATTAAGGAACAGGCTTTAGGTAGCAATTAGTCATAGAGAAAATATTTGTTTGAACTAAACATAAATGCCATTTTCACGATGGTAATGATATACTTTCTGGATCTGAGAGATTCTTTTACATATTAGAAAGTTCAATAATTTAATATTGCCATTTTTTTACTTCATATTGTGTTATGATATGCTTGCAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

mRNA sequence

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAATGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

Coding sequence (CDS)

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAATGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

Protein sequence

MADESQQPQSESQPPPLEVDSAPPPLPPPSFDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR

Homology

[Close]

BLAST of Carg19287 vs. NCBI nr
Match: XP_004134646.1 (PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hypothetical protein Csa_6G524060 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEVXXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECLVY 60
           MADESQQPQSE+Q PPL++  XXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECLVY
Sbjct: 1   MADESQQPQSETQ-PPLDIDSXXXXXXXXRFDPSRMIGIIRRKALIKELAAAYHAECLVY 60

Query: 61  CQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           CQELLELQRKWDEPYIELKAPDDPRKET KPSKRQ+KSR
Sbjct: 61  CQELLELQRKWDEPYIELKAPDDPRKETTKPSKRQKKSR 98

[Close]

BLAST of Carg19287 vs. NCBI nr
Match: XP_008439608.1 (PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEV--XXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECL 60
           MADESQQPQSESQ PPLEV  XXXXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECL
Sbjct: 1   MADESQQPQSESQ-PPLEVXXXXXXXXXXXXXFDPSRMIGIIRRKALIKELAAAYHAECL 60

Query: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQ+KSR
Sbjct: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQKKSR 100

[Close]

BLAST of Carg19287 vs. NCBI nr
Match: XP_022926864.1 (uncharacterized protein LOC111433847 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 44  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 103

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 104 PSKRQKKAR 112

[Close]

BLAST of Carg19287 vs. NCBI nr
Match: XP_023003492.1 (uncharacterized protein LOC111497089 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 44  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 103

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 104 PSKRQKKAR 112

[Close]

BLAST of Carg19287 vs. NCBI nr
Match: XP_023517756.1 (uncharacterized protein LOC111781421 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 28  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 87

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 88  PSKRQKKAR 96

[Close]

BLAST of Carg19287 vs. TAIR10
Match: AT4G18400.1 (unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIK+LAAAYH ECL  C+ELLELQ++ DEP+++ KA +D RKET++
Sbjct: 38  FDPSRMIGIIKRKALIKDLAAAYHVECLALCRELLELQKRKDEPFLDTKATEDLRKETLR 97

Query: 91  PSKRQRKSR 100
            S ++ K +
Sbjct: 98  SSSKRAKKK 106

[Close]

BLAST of Carg19287 vs. TrEMBL
Match: tr|A0A1S3AZS8|A0A1S3AZS8_CUCME (uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-35
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEV--XXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECL 60
           MADESQQPQSESQ PPLEV  XXXXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECL
Sbjct: 1   MADESQQPQSESQ-PPLEVXXXXXXXXXXXXXFDPSRMIGIIRRKALIKELAAAYHAECL 60

Query: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQ+KSR
Sbjct: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQKKSR 100

[Close]

BLAST of Carg19287 vs. TrEMBL
Match: tr|A0A0A0KM14|A0A0A0KM14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-35
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEVXXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECLVY 60
           MADESQQPQSE+Q PPL++  XXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECLVY
Sbjct: 1   MADESQQPQSETQ-PPLDIDSXXXXXXXXRFDPSRMIGIIRRKALIKELAAAYHAECLVY 60

Query: 61  CQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           CQELLELQRKWDEPYIELKAPDDPRKET KPSKRQ+KSR
Sbjct: 61  CQELLELQRKWDEPYIELKAPDDPRKETTKPSKRQKKSR 98

[Close]

BLAST of Carg19287 vs. TrEMBL
Match: tr|W9QXC0|W9QXC0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005901 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-23
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RKETM+
Sbjct: 29  FDPSRMIGIIKRKALIKELAAVYHAECLKYCQELLELQRKWDEPFIDLKTPEDARKETMR 88

Query: 91  PSKRQRKSR 100
           P KR +K R
Sbjct: 89  PPKRLKKLR 97

[Close]

BLAST of Carg19287 vs. TrEMBL
Match: tr|A0A2P5DHD1|A0A2P5DHD1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_064530 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.6e-23
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RK++M+
Sbjct: 38  FDPSRMIGIIKRKALIKELAAVYHAECLAYCQELLELQRKWDEPFIDLKIPEDSRKDSMR 97

Query: 91  PSKRQRKSR 100
           P KR +K+R
Sbjct: 98  PPKRLKKAR 106

[Close]

BLAST of Carg19287 vs. TrEMBL
Match: tr|A0A2P5EA25|A0A2P5EA25_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_218590 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RK+ M+
Sbjct: 38  FDPSRMIGIIKRKALIKELAAVYHAECLAYCQELLELQRKWDEPFIDLKIPEDSRKDAMR 97

Query: 91  PSKRQRKSR 100
           P KR +K+R
Sbjct: 98  PPKRLKKAR 106

The following BLAST results are available for this feature:

BLAST of Carg19287 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134646.1	1.5e-34	89.90	PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hy...	[more]
XP_008439608.1	1.5e-34	94.06	PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo]	[more]
XP_022926864.1	1.8e-27	91.30	uncharacterized protein LOC111433847 [Cucurbita moschata]	[more]
XP_023003492.1	1.8e-27	91.30	uncharacterized protein LOC111497089 [Cucurbita maxima]	[more]
XP_023517756.1	1.8e-27	91.30	uncharacterized protein LOC111781421 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19287 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18400.1	1.3e-19	65.22	unknown protein	[more]

BLAST of Carg19287 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19287 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZS8\|A0A1S3AZS8_CUCME	9.8e-35	94.06	uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=...	[more]
tr\|A0A0A0KM14\|A0A0A0KM14_CUCSA	9.8e-35	89.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1	[more]
tr\|W9QXC0\|W9QXC0_9ROSA	3.9e-23	82.61	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005901 PE=4 SV=1	[more]
tr\|A0A2P5DHD1\|A0A2P5DHD1_PARAD	8.6e-23	79.71	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_064530 PE...	[more]
tr\|A0A2P5EA25\|A0A2P5EA25_9ROSA	1.1e-22	79.71	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_218590 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19287-RA	Carg19287-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..99
None	No IPR available	PANTHER	PTHR37242	FAMILY NOT NAMED	coord: 9..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19287	Cla009790	Watermelon (97103) v1	carwmB0292
Carg19287	Csa6G524060	Cucumber (Chinese Long) v2	carcuB0326
Carg19287	MELO3C007115	Melon (DHL92) v3.5.1	carmeB0301
Carg19287	ClCG01G024800	Watermelon (Charleston Gray)	carwcgB0292
Carg19287	CSPI06G36480	Wild cucumber (PI 183967)	carcpiB0332
Carg19287	Cucsa.047900	Cucumber (Gy14) v1	carcgyB0350
Carg19287	CmaCh07G000900	Cucurbita maxima (Rimu)	carcmaB0415
Carg19287	CmaCh03G014200	Cucurbita maxima (Rimu)	carcmaB0413
Carg19287	CmoCh07G000900	Cucurbita moschata (Rifu)	carcmoB0410
Carg19287	CmoCh03G014150	Cucurbita moschata (Rifu)	carcmoB0408
Carg19287	Lsi01G001290	Bottle gourd (USVL1VR-Ls)	carlsiB273
Carg19287	Cp4.1LG10g06210	Cucurbita pepo (Zucchini)	carcpeB0413
Carg19287	Cp4.1LG19g05890	Cucurbita pepo (Zucchini)	carcpeB0415
Carg19287	CsGy6G035810	Cucumber (Gy14) v2	carcgybB0312
Carg19287	MELO3C007115.2	Melon (DHL92) v3.6.1	carmedB0312
Carg19287	CsaV3_6G051920	Cucumber (Chinese Long) v3	carcucB0332
Carg19287	Cla97C01G024760	Watermelon (97103) v2	carwmbB0307
Carg19287	Bhi03G000097	Wax gourd	carwgoB0385

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19287	Silver-seed gourd	carcarB327
Carg19287	Silver-seed gourd	carcarB328
Carg19287	Cucurbita maxima (Rimu)	carcmaB0411
Carg19287	Cucurbita maxima (Rimu)	carcmaB0412
Carg19287	Cucurbita moschata (Rifu)	carcmoB0406
Carg19287	Cucurbita moschata (Rifu)	carcmoB0407
Carg19287	Cucurbita pepo (Zucchini)	carcpeB0412
Carg19287	Cucurbita pepo (Zucchini)	carcpeB0416
Carg19287	Bottle gourd (USVL1VR-Ls)	carlsiB274
Carg19287	Melon (DHL92) v3.5.1	carmeB0300
Carg19287	Melon (DHL92) v3.6.1	carmedB0311
Carg19287	Watermelon (Charleston Gray)	carwcgB0293
Carg19287	Watermelon (97103) v1	carwmB0291
Carg19287	Watermelon (97103) v2	carwmbB0309
Carg19287	Wax gourd	carwgoB0386