Carg19287-RA (mRNA) Silver-seed gourd

NameCarg19287-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmediator of RNA polymerase II transcription subunit 15-like isoform X1
LocationCucurbita_argyrosperma_scaffold_137 : 164069 .. 165813 (-)
Sequence length300
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAAGTAATATTCATTTATTCATCTTGATTTCTTCATTCCGTGGGCTTTCTGTTTAGCGTTGTTTGATGAAATTTTTCGTCTGTTGGGTTTTGTTTGCTATTGATTGCCTTTTGGGGATTTATTAGGGCTGGGTGTTTCTGATCTTAACTCCCGAGCAATGGGGTTTTTCCCCTTATTTCTTTATACATTGTAGCTATGGGAACGGACGAACATTTGGCTGGAACCACTGAAGTCATTAGAATACCTCGCCGATTCTTCTATGGCAAAGTCCTTCTTTCCTCCTAGTTTCTTTCAATTGGCTCCATTCCCAATTGAATGGTAGACAAAGACATTGTTGGGGACGTTTCCAGAGACGTTTCTCTTAAAATTCTTCTAGTTCTATAAACTGTAATTGAACTGATCATTCTTTTTTTTTCTTTTCTTTTCAAGTGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGGTTTGAAATTCAGCCTTATATTCCTTTTGTTTCAACGTTATTTTCTTGGGAAATTTTTATCTTTAATCATTCAATACTTGAGCTGTTGAAGTTTTCTTTGATTGAGCAAATATACTAGTAAACCACTAATCTTGTGAGATCCCACGTTCTTCATAAGAGCGTGGAAATCTCTCCCTAATAGACACGTTTTAAAACCTTGAAGGGAAGTCTAGAAGGAAAAACCCAAAAAGAACAATATTGCTAGCGTGGGCTTGAGCTGTTACAAATCTCGAGTAGTTGTCTATGAGCCAGGTGTCTGAAGTGGAGGTTTCTTCCATAACTAATAGTTTGCGTTTAAGCCCCCTTCTGCCTAGTGTCCAAATCTTTTAACCTTTTAATGTATACTTTTTGAAGTCCTCTTTCCATTGCATTCCATTTAGGCTTTGATTCTATCGTATAGCTTGGTCTCCTCTGTTGTGCCTTTCTAGCCTCCTCCTAGGCCAGACAAGTTTCAAATTAGCTACTATAATTTCTTGGAAAATTATTCTATGTGTCTGCCTCATAATAAGCGTTAAACGTGGATTCAAAACGAACCAAATTTGAGGTACTTCTCTCATAAATCCAATGTAAAAAACTGTCAGTTACATTGAATAATTTCTCTTCACTGTGACTCCGACATACACACACATATATATATACACGCACTGTGGACTTTTATTTGATTCCAGACTTGTAGCCTTCAATTATTCACCTGTGTTTACCACAAGATTATAAGGAGTATAATATAGCAGGTCTGGCTTTTGGCTGGCAGTTTATTTCTGATGGTTATACTAATATCCAGGATTGTAAGGGATTAAGGAACAGGCTTTAGGTAGCAATTAGTCATAGAGAAAATATTTGTTTGAACTAAACATAAATGCCATTTTCACGATGGTAATGATATACTTTCTGGATCTGAGAGATTCTTTTACATATTAGAAAGTTCAATAATTTAATATTGCCATTTTTTTACTTCATATTGTGTTATGATATGCTTGCAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

mRNA sequence

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAATGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

Coding sequence (CDS)

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAATGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

Protein sequence

MADESQQPQSESQPPPLEVDSAPPPLPPPSFDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR
BLAST of Carg19287-RA vs. NCBI nr
Match: XP_004134646.1 (PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hypothetical protein Csa_6G524060 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0

Query: 1   MADESQQPQSESQPPPLEVXXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECLVY 60
           MADESQQPQSE+Q PPL++  XXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECLVY
Sbjct: 1   MADESQQPQSETQ-PPLDIDSXXXXXXXXRFDPSRMIGIIRRKALIKELAAAYHAECLVY 60

Query: 61  CQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           CQELLELQRKWDEPYIELKAPDDPRKET KPSKRQ+KSR
Sbjct: 61  CQELLELQRKWDEPYIELKAPDDPRKETTKPSKRQKKSR 98

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_008439608.1 (PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MADESQQPQSESQPPPLEV--XXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECL 60
           MADESQQPQSESQ PPLEV  XXXXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECL
Sbjct: 1   MADESQQPQSESQ-PPLEVXXXXXXXXXXXXXFDPSRMIGIIRRKALIKELAAAYHAECL 60

Query: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQ+KSR
Sbjct: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQKKSR 100

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_022926864.1 (uncharacterized protein LOC111433847 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0

Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 44  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 103

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 104 PSKRQKKAR 112

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_023003492.1 (uncharacterized protein LOC111497089 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0

Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 44  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 103

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 104 PSKRQKKAR 112

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_023517756.1 (uncharacterized protein LOC111781421 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0

Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 28  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 87

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 88  PSKRQKKAR 96

BLAST of Carg19287-RA vs. TAIR10
Match: AT4G18400.1 (unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIK+LAAAYH ECL  C+ELLELQ++ DEP+++ KA +D RKET++
Sbjct: 38  FDPSRMIGIIKRKALIKDLAAAYHVECLALCRELLELQKRKDEPFLDTKATEDLRKETLR 97

Query: 91  PSKRQRKSR 100
            S ++ K +
Sbjct: 98  SSSKRAKKK 106

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A1S3AZS8|A0A1S3AZS8_CUCME (uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-35
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MADESQQPQSESQPPPLEV--XXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECL 60
           MADESQQPQSESQ PPLEV  XXXXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECL
Sbjct: 1   MADESQQPQSESQ-PPLEVXXXXXXXXXXXXXFDPSRMIGIIRRKALIKELAAAYHAECL 60

Query: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQ+KSR
Sbjct: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQKKSR 100

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A0A0KM14|A0A0A0KM14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-35
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0

Query: 1   MADESQQPQSESQPPPLEVXXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECLVY 60
           MADESQQPQSE+Q PPL++  XXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECLVY
Sbjct: 1   MADESQQPQSETQ-PPLDIDSXXXXXXXXRFDPSRMIGIIRRKALIKELAAAYHAECLVY 60

Query: 61  CQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           CQELLELQRKWDEPYIELKAPDDPRKET KPSKRQ+KSR
Sbjct: 61  CQELLELQRKWDEPYIELKAPDDPRKETTKPSKRQKKSR 98

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|W9QXC0|W9QXC0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005901 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-23
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RKETM+
Sbjct: 29  FDPSRMIGIIKRKALIKELAAVYHAECLKYCQELLELQRKWDEPFIDLKTPEDARKETMR 88

Query: 91  PSKRQRKSR 100
           P KR +K R
Sbjct: 89  PPKRLKKLR 97

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A2P5DHD1|A0A2P5DHD1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_064530 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.6e-23
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RK++M+
Sbjct: 38  FDPSRMIGIIKRKALIKELAAVYHAECLAYCQELLELQRKWDEPFIDLKIPEDSRKDSMR 97

Query: 91  PSKRQRKSR 100
           P KR +K+R
Sbjct: 98  PPKRLKKAR 106

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A2P5EA25|A0A2P5EA25_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_218590 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RK+ M+
Sbjct: 38  FDPSRMIGIIKRKALIKELAAVYHAECLAYCQELLELQRKWDEPFIDLKIPEDSRKDAMR 97

Query: 91  PSKRQRKSR 100
           P KR +K+R
Sbjct: 98  PPKRLKKAR 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004134646.11.5e-3489.90PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hy... [more]
XP_008439608.11.5e-3494.06PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo][more]
XP_022926864.11.8e-2791.30uncharacterized protein LOC111433847 [Cucurbita moschata][more]
XP_023003492.11.8e-2791.30uncharacterized protein LOC111497089 [Cucurbita maxima][more]
XP_023517756.11.8e-2791.30uncharacterized protein LOC111781421 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT4G18400.11.3e-1965.22unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AZS8|A0A1S3AZS8_CUCME9.8e-3594.06uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=... [more]
tr|A0A0A0KM14|A0A0A0KM14_CUCSA9.8e-3589.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1[more]
tr|W9QXC0|W9QXC0_9ROSA3.9e-2382.61Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005901 PE=4 SV=1[more]
tr|A0A2P5DHD1|A0A2P5DHD1_PARAD8.6e-2379.71Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_064530 PE... [more]
tr|A0A2P5EA25|A0A2P5EA25_9ROSA1.1e-2279.71Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_218590 PE=4 S... [more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg19287Carg19287gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg19287-RACarg19287-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg19287-RA.CDS.3Carg19287-RA.CDS.3CDS
Carg19287-RA.CDS.2Carg19287-RA.CDS.2CDS
Carg19287-RA.CDS.1Carg19287-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg19287-RA.exon.3Carg19287-RA.exon.3exon
Carg19287-RA.exon.2Carg19287-RA.exon.2exon
Carg19287-RA.exon.1Carg19287-RA.exon.1exon


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..99
NoneNo IPR availablePANTHERPTHR37242FAMILY NOT NAMEDcoord: 9..98