Carg19086 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19086
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	proline-rich receptor-like protein kinase PERK10
Location	Cucurbita_argyrosperma_scaffold_112 : 122792 .. 123268 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAACTCCGCCCAGTCCAACATCTGTGAGTCCGGATCCAATGGATGCTCAGCTGCGATCCTCGATTCCTAAGACCACTAAGAAGTTCTGA

mRNA sequence

ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAACTCCGCCCAGTCCAACATCTGTGAGTCCGGATCCAATGGATGCTCAGCTGCGATCCTCGATTCCTAAGACCACTAAGAAGTTCTGA

Coding sequence (CDS)

ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAACTCCGCCCAGTCCAACATCTGTGAGTCCGGATCCAATGGATGCTCAGCTGCGATCCTCGATTCCTAAGACCACTAAGAAGTTCTGA

Protein sequence

MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPSGSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPPPPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF

Homology

[Close]

BLAST of Carg19086 vs. NCBI nr
Match: XP_022930697.1 (sulfated surface glycoprotein 185-like [Cucurbita moschata])

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPP 73
          GSAASNQPQNPP
Sbjct: 61 GSAASNQPQNPP 72

[Close]

BLAST of Carg19086 vs. NCBI nr
Match: XP_023530339.1 (sulfated surface glycoprotein 185-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPP 73
          GSAASNQPQNPP
Sbjct: 61 GSAASNQPQNPP 72

[Close]

BLAST of Carg19086 vs. NCBI nr
Match: XP_022989502.1 (sulfated surface glycoprotein 185-like [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 2.7e-30
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVT+LVVLGLVLAFGVFRHSLQKPHKCL DSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTILVVLGLVLAFGVFRHSLQKPHKCLRDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPP 73
          GSAASNQPQNPP
Sbjct: 61 GSAASNQPQNPP 72

[Close]

BLAST of Carg19086 vs. NCBI nr
Match: XP_022135895.1 (proline-rich receptor-like protein kinase PERK2 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 3.3e-20
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  FP+PNS P 
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFLRHGLQKSHKCSGNSCFSPPDVFPDPNSAPP 60

Query: 61 GSA----ASNQPQNPP 73
          G A    ASNQP N P
Sbjct: 61 GGAAPISASNQPGNSP 76

[Close]

BLAST of Carg19086 vs. NCBI nr
Match: XP_008455396.1 (PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  F NPNS   
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPAVFSNPNSATP 60

Query: 61 GS---AASNQPQ 70
          G+   +ASNQPQ
Sbjct: 61 GASPISASNQPQ 72

[Close]

BLAST of Carg19086 vs. TAIR10
Match: AT3G22070.1 (proline-rich family protein)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-09
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFS 48
          +CYVGKATKIFIFIVTV+ V+GLV+AFGV R   +  H C GD C S
Sbjct: 2  LCYVGKATKIFIFIVTVVFVIGLVVAFGVLR---RHSHHCSGDYCSS 45

[Close]

BLAST of Carg19086 vs. TrEMBL
Match: tr|A0A1S3C1J2|A0A1S3C1J2_CUCME (proline-rich receptor-like protein kinase PERK10 OS=Cucumis melo OX=3656 GN=LOC103495568 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.1e-19
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  F NPNS   
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPAVFSNPNSATP 60

Query: 61 GS---AASNQPQ 70
          G+   +ASNQPQ
Sbjct: 61 GASPISASNQPQ 72

[Close]

BLAST of Carg19086 vs. TrEMBL
Match: tr|A0A0A0K5L2|A0A0A0K5L2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044870 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.1e-19
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  F NPNS   
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPAVFSNPNSATP 60

Query: 61 GS---AASNQPQ 70
          G+   +ASNQPQ
Sbjct: 61 GASPISASNQPQ 72

[Close]

BLAST of Carg19086 vs. TrEMBL
Match: tr|W9SD86|W9SD86_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018287 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPN 55
          MCYVGKATKIFIFIVTVLVVLGLVL FG+ RH LQK HKC GDSC SPP  FPN
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGLLRHGLQKTHKCSGDSCQSPPLVFPN 54

[Close]

BLAST of Carg19086 vs. TrEMBL
Match: tr|A0A061E2P1|A0A061E2P1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007780 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNS 58
          MCYVGKATKIFIF+VTVLVVLGLVL FG+FRH LQK HKC GDSC SP   FP+P S
Sbjct: 1  MCYVGKATKIFIFVVTVLVVLGLVLGFGLFRHGLQKSHKCSGDSCPSPTNVFPDPIS 57

[Close]

BLAST of Carg19086 vs. TrEMBL
Match: tr|A0A251Q563|A0A251Q563_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G221700 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-14
Identity = 50/73 (68.49%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGD-----SCFSPPTAFPNP 60
          MCYVGKATKIFIF+VTVLVVLGLVL FGV RH LQK HKC  D     S  SPP  FPNP
Sbjct: 1  MCYVGKATKIFIFVVTVLVVLGLVLGFGVLRHGLQKTHKCSADSDSCHSLSSPPLIFPNP 60

Query: 61 NSVPSGSAASNQP 69
          NS      +SNQP
Sbjct: 61 NS------SSNQP 67

The following BLAST results are available for this feature:

BLAST of Carg19086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930697.1	2.5e-31	100.00	sulfated surface glycoprotein 185-like [Cucurbita moschata]	[more]
XP_023530339.1	2.5e-31	100.00	sulfated surface glycoprotein 185-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989502.1	2.7e-30	97.22	sulfated surface glycoprotein 185-like [Cucurbita maxima]	[more]
XP_022135895.1	3.3e-20	75.00	proline-rich receptor-like protein kinase PERK2 [Momordica charantia]	[more]
XP_008455396.1	1.1e-18	75.00	PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis melo]	[more]

BLAST of Carg19086 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22070.1	5.5e-09	65.96	proline-rich family protein	[more]

BLAST of Carg19086 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19086 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1J2\|A0A1S3C1J2_CUCME	7.1e-19	75.00	proline-rich receptor-like protein kinase PERK10 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0K5L2\|A0A0A0K5L2_CUCSA	7.1e-19	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044870 PE=4 SV=1	[more]
tr\|W9SD86\|W9SD86_9ROSA	1.6e-15	83.33	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018287 PE=4 SV=1	[more]
tr\|A0A061E2P1\|A0A061E2P1_THECC	3.6e-15	78.95	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007780 PE=4 SV=1	[more]
tr\|A0A251Q563\|A0A251Q563_PRUPE	4.0e-14	68.49	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G221700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19086-RA	Carg19086-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 47..59 score: 44.62 coord: 101..122 score: 49.09 coord: 89..101 score: 30.77 coord: 67..83 score: 38.82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..139
None	No IPR available	PANTHER	PTHR36036	FAMILY NOT NAMED	coord: 1..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19086	Cla007694	Watermelon (97103) v1	carwmB0718
Carg19086	Csa7G044870	Cucumber (Chinese Long) v2	carcuB0739
Carg19086	MELO3C018795	Melon (DHL92) v3.5.1	carmeB0715
Carg19086	CSPI07G03960	Wild cucumber (PI 183967)	carcpiB0755
Carg19086	CmaCh11G018430	Cucurbita maxima (Rimu)	carcmaB1006
Carg19086	CmaCh19G009390	Cucurbita maxima (Rimu)	carcmaB1008
Carg19086	CmoCh19G009650	Cucurbita moschata (Rifu)	carcmoB0981
Carg19086	CmoCh11G019160	Cucurbita moschata (Rifu)	carcmoB0979
Carg19086	Cp4.1LG04g03380	Cucurbita pepo (Zucchini)	carcpeB1015
Carg19086	MELO3C018795.2	Melon (DHL92) v3.6.1	carmedB0728
Carg19086	Bhi05G001150	Wax gourd	carwgoB0848

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19086	Carg19185	Silver-seed gourd	carcarB590

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19086	Silver-seed gourd	carcarB035
Carg19086	Silver-seed gourd	carcarB176
Carg19086	Cucumber (Gy14) v2	carcgybB0717
Carg19086	Cucumber (Gy14) v1	carcgyB0809
Carg19086	Cucumber (Gy14) v1	carcgyB0810
Carg19086	Cucurbita maxima (Rimu)	carcmaB1010
Carg19086	Cucurbita moschata (Rifu)	carcmoB0980
Carg19086	Cucurbita moschata (Rifu)	carcmoB0983
Carg19086	Cucurbita pepo (Zucchini)	carcpeB1012
Carg19086	Cucurbita pepo (Zucchini)	carcpeB1013
Carg19086	Cucurbita pepo (Zucchini)	carcpeB1016
Carg19086	Cucumber (Chinese Long) v3	carcucB0758
Carg19086	Bottle gourd (USVL1VR-Ls)	carlsiB659
Carg19086	Watermelon (Charleston Gray)	carwcgB0696
Carg19086	Watermelon (97103) v2	carwmbB0752