Carg18859 (gene) Silver-seed gourd

Overview
NameCarg18859
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionATP-dependent RNA helicase A
LocationCucurbita_argyrosperma_scaffold_162 : 140681 .. 141271 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACCTCCCTGGTCGCGGGAACCCTTTCAATGGTTGCCAACAATGGCGTTGGCTTCGCCAAATTCCTCAATCGCTTCGATTTCGTATCCAATTACTACATCTCCGCCACCGATTCGATCGCCGACCAGATCGCGCCGTATTCCGCCGCCGGAGCTCTTCAGTTATCAGCCGCACTGTTCCCCGTCGCAACCATTGCTCCGCCGCCTGTCAAATCTATTTCACGCCGATCGGCCTCTCGGACGTTTCTCCGTAGAAAGCGCCGCACGAAGCGTAGATTGTACAGCGATGACTCCGAGGGCGGAGAAGTCAACGGATTCGGCGGCGGCGATTTTGACGGATCGTACGGCGGAGGTGGCGGTAGCGGCGGAAGTGGCTGGAATTTCGATAGATTTGGGGGGAGTGATTGGGAAGAATCTTCATCCTCTTCTTCTAATCCGGCGTATTATTTCGTTTACGAGGTGGTTTATTGGATCGCGCTCTCAAATTGTGTGCATTTCGCATTCAAGAAGGTTATTAGGTTTGCAGGTGAAGCAATCAGGAACTCCGAACGAGGAAAATTGTCCATGAGATTAATCTCTGTGTGTTGA

mRNA sequence

ATGGATACCTCCCTGGTCGCGGGAACCCTTTCAATGGTTGCCAACAATGGCGTTGGCTTCGCCAAATTCCTCAATCGCTTCGATTTCGTATCCAATTACTACATCTCCGCCACCGATTCGATCGCCGACCAGATCGCGCCGTATTCCGCCGCCGGAGCTCTTCAGTTATCAGCCGCACTGTTCCCCGTCGCAACCATTGCTCCGCCGCCTGTCAAATCTATTTCACGCCGATCGGCCTCTCGGACGTTTCTCCGTAGAAAGCGCCGCACGAAGCGTAGATTGTACAGCGATGACTCCGAGGGCGGAGAAGTCAACGGATTCGGCGGCGGCGATTTTGACGGATCGTACGGCGGAGGTGGCGGTAGCGGCGGAAGTGGCTGGAATTTCGATAGATTTGGGGGGAGTGATTGGGAAGAATCTTCATCCTCTTCTTCTAATCCGGCGTATTATTTCGTTTACGAGGTGGTTTATTGGATCGCGCTCTCAAATTGTGTGCATTTCGCATTCAAGAAGGTTATTAGGTTTGCAGGTGAAGCAATCAGGAACTCCGAACGAGGAAAATTGTCCATGAGATTAATCTCTGTGTGTTGA

Coding sequence (CDS)

ATGGATACCTCCCTGGTCGCGGGAACCCTTTCAATGGTTGCCAACAATGGCGTTGGCTTCGCCAAATTCCTCAATCGCTTCGATTTCGTATCCAATTACTACATCTCCGCCACCGATTCGATCGCCGACCAGATCGCGCCGTATTCCGCCGCCGGAGCTCTTCAGTTATCAGCCGCACTGTTCCCCGTCGCAACCATTGCTCCGCCGCCTGTCAAATCTATTTCACGCCGATCGGCCTCTCGGACGTTTCTCCGTAGAAAGCGCCGCACGAAGCGTAGATTGTACAGCGATGACTCCGAGGGCGGAGAAGTCAACGGATTCGGCGGCGGCGATTTTGACGGATCGTACGGCGGAGGTGGCGGTAGCGGCGGAAGTGGCTGGAATTTCGATAGATTTGGGGGGAGTGATTGGGAAGAATCTTCATCCTCTTCTTCTAATCCGGCGTATTATTTCGTTTACGAGGTGGTTTATTGGATCGCGCTCTCAAATTGTGTGCATTTCGCATTCAAGAAGGTTATTAGGTTTGCAGGTGAAGCAATCAGGAACTCCGAACGAGGAAAATTGTCCATGAGATTAATCTCTGTGTGTTGA

Protein sequence

MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAALFPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYSDDSEGGEVNGFGGGDFDGSYGGGGGSGGSGWNFDRFGGSDWEESSSSSSNPAYYFVYEVVYWIALSNCVHFAFKKVIRFAGEAIRNSERGKLSMRLISVC
Homology
[Close]
BLAST of Carg18859 vs. NCBI nr
Match: XP_022930265.1 (uncharacterized protein LOC111436769 [Cucurbita moschata])

HSP 1 Score: 205.3 bits (521), Expect = 1.9e-49
Identity = 165/196 (84.18%), Postives = 165/196 (84.18%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60

Query: 61  FPVATIAPPPVKSISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPVATIAPPPVKSISR       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FPVATIAPPPVKSISRRSASRTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKVIRFAGEAI 180
           XXXXXXX                        VYEVVYWIALSNCVHFAFKKVIRFAGEAI
Sbjct: 121 XXXXXXXNFDRFGGSDWEESPSSSSNPAYYFVYEVVYWIALSNCVHFAFKKVIRFAGEAI 180

Query: 181 RNSERGKLSMRLISVC 197
           RNSERGKLSMRLISVC
Sbjct: 181 RNSERGKLSMRLISVC 196

[Close]
BLAST of Carg18859 vs. NCBI nr
Match: XP_023513728.1 (uncharacterized protein LOC111778252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 2.7e-48
Identity = 185/196 (94.39%), Postives = 185/196 (94.39%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MDTSLVAGTLSMVANNGVGFAKFLNR DFVSNYYIS TDSIADQIAPYSAAGALQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDFVSNYYISVTDSIADQIAPYSAAGALQLSAAL 60

Query: 61  FPVATIAPPPVKSISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPVATIAPPPVKSISR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FPVATIAPPPVKSISRRSASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKVIRFAGEAI 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXX    VYEVVYWIALSNCVHFAFKKVIRFAGEAI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXAYYFVYEVVYWIALSNCVHFAFKKVIRFAGEAI 180

Query: 181 RNSERGKLSMRLISVC 197
           RNSERGKLSMRLISVC
Sbjct: 181 RNSERGKLSMRLISVC 196

[Close]
BLAST of Carg18859 vs. NCBI nr
Match: XP_023000153.1 (uncharacterized protein LOC111494437 [Cucurbita maxima])

HSP 1 Score: 191.0 bits (484), Expect = 3.7e-45
Identity = 154/196 (78.57%), Postives = 155/196 (79.08%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MDTSLVAGTLSMVANNGVGFAKFLNR DFVSNYYIS TDSIADQIAPYSAAGALQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDFVSNYYISITDSIADQIAPYSAAGALQLSAAL 60

Query: 61  FPVATIAPPPVKSISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPVATIAPPPVKS S           XXXXXXXXXXXXXXXXX    XXXXXXXXXXXXX
Sbjct: 61  FPVATIAPPPVKSTS-CRSASRTFLRXXXXXXXXXXXXXXXXXEVNGXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKVIRFAGEAI 180
           XXXXXXXX                       VYEVVYWIALSNCVHFAFKKVIRFAGEA+
Sbjct: 121 XXXXXXXXNFDRFGGSDWDESSSSSNPAYYFVYEVVYWIALSNCVHFAFKKVIRFAGEAM 180

Query: 181 RNSERGKLSMRLISVC 197
           RNSERGKLSMRLISVC
Sbjct: 181 RNSERGKLSMRLISVC 195

[Close]
BLAST of Carg18859 vs. NCBI nr
Match: XP_022959163.1 (uncharacterized protein LOC111460236 [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 6.3e-37
Identity = 150/200 (75.00%), Postives = 153/200 (76.50%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MDTSLVAGTLSMVANNGVGFAKFLNR D +SNY  SATDSI DQI P SAAGALQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60

Query: 61  FPVATIAPPPVKSI----SRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPVATIAPPPVKSI    S     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FPVATIAPPPVKSISCRSSSRMFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKVIRFA 180
           XXXXXXXXX                          VYEVV WIALSNCVHFAFKKV+RFA
Sbjct: 121 XXXXXXXXXNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

Query: 181 GEAIRNSERGKLSMRLISVC 197
            EAI NSER KL +RLISVC
Sbjct: 181 AEAIGNSERVKLFLRLISVC 200

[Close]
BLAST of Carg18859 vs. NCBI nr
Match: XP_023548774.1 (uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.7 bits (413), Expect = 6.3e-37
Identity = 153/200 (76.50%), Postives = 156/200 (78.00%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MDTSLVAGTLSMVANNGVGFAKFLNR D +SNY ISATDSI DQI P SAAGALQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSAAL 60

Query: 61  FPVATIAPPPVKSI----SRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPVATIAPPPVKSI    S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FPVATIAPPPVKSISCRSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKVIRFA 180
           XXXXXXXX                           VYEV+ WIALSNCVHFAFKKV+RFA
Sbjct: 121 XXXXXXXXWNFDRFGGSDWDESSSSSTSLNPAYYFVYEVICWIALSNCVHFAFKKVVRFA 180

Query: 181 GEAIRNSERGKLSMRLISVC 197
            EAI NSER KL  RLISVC
Sbjct: 181 AEAIGNSERVKLFTRLISVC 200

[Close]
BLAST of Carg18859 vs. TAIR10
Match: AT3G06780.1 (glycine-rich protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 102/209 (48.80%), Postives = 123/209 (58.85%), Query Frame = 0 

Query: 1   MDTSLVAGTLSM-VANNGVGFAK-FLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSA 60
           M+ SL+A T+++  A  G+ F K  L R D  +  +IS  DS+ D  +P    G +Q SA
Sbjct: 1   MEFSLIADTVTVCTAKQGIAFGKSLLQRLDLAN--HISFADSVVDHQSP--GGGIVQASA 60

Query: 61  ALFPVATIAPPPVKSIS-----------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            +FPV  IAPPPV+S S            XXXXXXXXXXXXXXXXXXX            
Sbjct: 61  IIFPVDAIAPPPVRSSSYKTIXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEGDFGGSDGP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHF 180
            XXXXXXXXXXXXXXXXXXXXXXXXX                  VYEV+ WIALSNCVHF
Sbjct: 121 FXXXXXXXXXXXXXXXXXXXXXXXXXDNWDGSSFSSWSDPAMEFVYEVICWIALSNCVHF 180

Query: 181 AFKKVIRFAGEAIRNSERGKLSMRLISVC 197
           AFK+++R     + + ER KL++ L  VC
Sbjct: 181 AFKRIVRI----VTDGEREKLNIALSPVC 201

[Close]
BLAST of Carg18859 vs. TrEMBL
Match: tr|A0A0A0KG90|A0A0A0KG90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.5e-36
Identity = 141/200 (70.50%), Postives = 147/200 (73.50%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MD+SLVAGTLSMVANN +GFAK LNR DFVSNY IS TDSI DQI P S A AL+LSAAL
Sbjct: 1   MDSSLVAGTLSMVANNSIGFAKLLNRLDFVSNYCISVTDSITDQIPPSSTAAALRLSAAL 60

Query: 61  FPVATIAPPPVKSIS----RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPVATIAPPPVKS+S                             XXXXXXXXXXXXXXXX
Sbjct: 61  FPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSEGREDXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKVIRFA 180
           XXXXXXXXX           XXXXXXXXXXXXXXXVYEVV WIALSNCVHFAFKKV+RFA
Sbjct: 121 XXXXXXXXXNFDRFGGNDWDXXXXXXXXXXXXXXXVYEVVCWIALSNCVHFAFKKVVRFA 180

Query: 181 GEAIRNSERGKLSMRLISVC 197
            EAI NSERGKL+MRLISVC
Sbjct: 181 AEAIGNSERGKLAMRLISVC 200

[Close]
BLAST of Carg18859 vs. TrEMBL
Match: tr|A0A1S3C7S8|A0A1S3C7S8_CUCME (uncharacterized protein LOC103497828 OS=Cucumis melo OX=3656 GN=LOC103497828 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.3e-35
Identity = 147/200 (73.50%), Postives = 153/200 (76.50%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MD+SLVAGTLSMVANN +GFAK LNR DFVSNY ISATDSI DQI   S A +L+LSAAL
Sbjct: 1   MDSSLVAGTLSMVANNSIGFAKLLNRLDFVSNYCISATDSITDQIPSSSTAASLRLSAAL 60

Query: 61  FPVATIAPPPVKSISR----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPVATIAPPPVKS+S      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FPVATIAPPPVKSVSNRSASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKVIRFA 180
           XXXXXXXX                           VYEVV WIALSNCVHFAFKKV+RFA
Sbjct: 121 XXXXXXXXWNFDRFGGNDWDESSFSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

Query: 181 GEAIRNSERGKLSMRLISVC 197
            EA  NSERGKLSMRLISVC
Sbjct: 181 AEAFGNSERGKLSMRLISVC 200

[Close]
BLAST of Carg18859 vs. TrEMBL
Match: tr|A0A2P5CLN9|A0A2P5CLN9_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_141630 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 111/206 (53.88%), Postives = 132/206 (64.08%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MD S++A T+S+  + G+GFA  +      SN+ IS +DS +DQ +P S+AG LQ+SAA+
Sbjct: 1   MDISIIADTVSIATSQGLGFA--IRPNFSTSNHQISLSDSSSDQSSP-SSAGVLQISAAI 60

Query: 61  FPVATIAPPPVKS----------ISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPV  +APPPVKS          + +                 XXXXXXXXXXXXXXXXX
Sbjct: 61  FPVDALAPPPVKSNSFRIASRTLLRKKRRIRRRSLSGGDSDEGXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFK 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXX              VYEV+ WIALSNCVHFAFK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXESSSSSPSDPAFDFVYEVISWIALSNCVHFAFK 180

Query: 181 KVIRFAGEAIRNSERGKLSMRLISVC 197
           KV R     I ++ER K+ MRL SVC
Sbjct: 181 KVFRIVAGGIGDAEREKVPMRLTSVC 203

[Close]
BLAST of Carg18859 vs. TrEMBL
Match: tr|A0A2P5ERR9|A0A2P5ERR9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_160600 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 126/206 (61.17%), Postives = 144/206 (69.90%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
           MD S+VA T+S+  + G+GFA  +      SN+ IS +DS +DQ +P S+AG LQ+SA +
Sbjct: 1   MDISMVADTVSIATSQGLGFA--IRPNFSTSNHQISLSDSSSDQSSP-SSAGVLQISAVI 60

Query: 61  FPVATIAPPPVKSIS----------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FPV  +APPPVKS S           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FPVDALAPPPVKSNSFRTASRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFK 180
           XXXXXXXXXXXXXXXXXXXXXXXX                 VYEV+ WIALSNCVHFAFK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXNWDESSSSSPSDPAFDFVYEVISWIALSNCVHFAFK 180

Query: 181 KVIRFAGEAIRNSERGKLSMRLISVC 197
           KV R     I ++ER K+ MRL SVC
Sbjct: 181 KVFRIVAGGIGDAEREKVPMRLTSVC 203

[Close]
BLAST of Carg18859 vs. TrEMBL
Match: tr|M5XSF3|M5XSF3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009469mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 115/204 (56.37%), Postives = 133/204 (65.20%), Query Frame = 0 

Query: 1   MDTSLVAGTLSMVAN-NGVGFAKFLNR-FDFVSNYYISATDSIADQIAPYSAAGALQLSA 60
           MD SL+  T+++     G+GFAKFL R  D  SN  IS TDS  DQ +P  + G  Q+SA
Sbjct: 90  MDVSLLYDTVTVATTAQGLGFAKFLIRHHDLTSNNQISITDSHPDQSSP--SNGVPQISA 149

Query: 61  ALFPVATIAPPPVKSISR------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            +FPV  +APP V+  S       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 150 VIFPVDAVAPPRVRPNSHKTATRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 209

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEVVYWIALSNCVHFAFKKV 180
           XXXXXXXXXXXXXX                         VYEV+ WIALSNCVHFAFK+V
Sbjct: 210 XXXXXXXXXXXXXXNFDRFGGHNWDESSSSSPSDPAFDFVYEVMCWIALSNCVHFAFKRV 269

Query: 181 IRFAGEAIRNSERGKLSMRLISVC 197
           IR   + + ++ER K+ MRL SVC
Sbjct: 270 IRIVADGLGDAERAKVPMRLTSVC 291

The following BLAST results are available for this feature:
BLAST of Carg18859 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930265.11.9e-4984.18uncharacterized protein LOC111436769 [Cucurbita moschata][more]
XP_023513728.12.7e-4894.39uncharacterized protein LOC111778252 [Cucurbita pepo subsp. pepo][more]
XP_023000153.13.7e-4578.57uncharacterized protein LOC111494437 [Cucurbita maxima][more]
XP_022959163.16.3e-3775.00uncharacterized protein LOC111460236 [Cucurbita moschata][more]
XP_023548774.16.3e-3776.50uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg18859 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06780.11.8e-0948.80glycine-rich protein[more]
BLAST of Carg18859 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18859 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KG90|A0A0A0KG90_CUCSA3.5e-3670.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1[more]
tr|A0A1S3C7S8|A0A1S3C7S8_CUCME2.3e-3573.50uncharacterized protein LOC103497828 OS=Cucumis melo OX=3656 GN=LOC103497828 PE=... [more]
tr|A0A2P5CLN9|A0A2P5CLN9_PARAD2.9e-1453.88Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_141630 PE... [more]
tr|A0A2P5ERR9|A0A2P5ERR9_9ROSA1.5e-1361.17Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_160600 PE=4 S... [more]
tr|M5XSF3|M5XSF3_PRUPE3.0e-1156.37Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009469mg PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18859-RACarg18859-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36751FAMILY NOT NAMEDcoord: 1..196

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18859Cla009282Watermelon (97103) v1carwmB0701
Carg18859Csa6G318150Cucumber (Chinese Long) v2carcuB0724
Carg18859MELO3C021305Melon (DHL92) v3.5.1carmeB0700
Carg18859ClCG06G004920Watermelon (Charleston Gray)carwcgB0681
Carg18859CSPI06G17370Wild cucumber (PI 183967)carcpiB0739
Carg18859Cucsa.069290Cucumber (Gy14) v1carcgyB0785
Carg18859CmaCh08G012440Cucurbita maxima (Rimu)carcmaB0988
Carg18859CmaCh17G003450Cucurbita maxima (Rimu)carcmaB0985
Carg18859CmoCh17G003320Cucurbita moschata (Rifu)carcmoB0958
Carg18859CmoCh08G012160Cucurbita moschata (Rifu)carcmoB0960
Carg18859Lsi09G014550Bottle gourd (USVL1VR-Ls)carlsiB641
Carg18859Cp4.1LG17g00370Cucurbita pepo (Zucchini)carcpeB0985
Carg18859Cp4.1LG12g02930Cucurbita pepo (Zucchini)carcpeB0984
Carg18859MELO3C021305.2Melon (DHL92) v3.6.1carmedB0713
Carg18859CsaV3_6G022730Cucumber (Chinese Long) v3carcucB0742
Carg18859Cla97C06G114410Watermelon (97103) v2carwmbB0735
Carg18859Bhi12G001799Wax gourdcarwgoB0827
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18859Carg05520Silver-seed gourdcarcarB085
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18859Silver-seed gourdcarcarB316
Carg18859Cucumber (Gy14) v2carcgybB0700
Carg18859Cucumber (Gy14) v2carcgybB0701
Carg18859Cucumber (Gy14) v1carcgyB0788
Carg18859Cucurbita maxima (Rimu)carcmaB0984
Carg18859Cucurbita maxima (Rimu)carcmaB0987
Carg18859Cucurbita moschata (Rifu)carcmoB0957
Carg18859Cucurbita pepo (Zucchini)carcpeB0986
Carg18859Cucurbita pepo (Zucchini)carcpeB0987
Carg18859Wild cucumber (PI 183967)carcpiB0738
Carg18859Cucumber (Chinese Long) v2carcuB0723
Carg18859Cucumber (Chinese Long) v3carcucB0741
Carg18859Bottle gourd (USVL1VR-Ls)carlsiB642
Carg18859Melon (DHL92) v3.5.1carmeB0701
Carg18859Melon (DHL92) v3.6.1carmedB0714
Carg18859Watermelon (Charleston Gray)carwcgB0680
Carg18859Watermelon (97103) v1carwmB0700
Carg18859Watermelon (97103) v2carwmbB0733
Carg18859Watermelon (97103) v2carwmbB0734
Carg18859Wax gourdcarwgoB0828