Carg18851 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18851
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function (DUF581)
Location	Cucurbita_argyrosperma_scaffold_162 : 108518 .. 109262 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCTCATTTTCCCGTTCGCTTATTTATTTTCTTCCCTGAAAGAAACCAAGGAACCAGGAAACAAAATTGTCCCTGTTTTTTTTTCCTTCCCATTTTCTCCCTGAACTCAAATGCTCTTACAATGGTCGGTTTAAGCGTGATTCTGGAATCCAACCAGGGAGATTTTTGTAATAAATCATCCCAGGTTATCAGTAAAGCCTCCGTTATGAACCTCACCGTCAAGTCCTCTTCTCGCAACCCTAATTCCTGCCTCCAGACGACGTCGTTTCGCCTCCATTCCTGCTATCTCTGTAATCAGAAGCTCTTGCCTGGAAAGGACATCTATATGTACAAGTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATTTGTATTTGTCTGATGATTTTGTTGGAATTTAGGGGAGATAGGGGATTTTGCAGCGTGGAGTGTAGATGCAGGCAGATTTTAATGGACGAAAAAGAGAGTATAATGAAGGAAAATTCATCGTCGAGTCGTAAAACGGCGTCGCTTTCGAGTTCGGAATCTGGTTCTTCTTCTTCGTCGACTTCAATGGCGGCTTCCCGTGACCGTAAATCCACGAGGAATCGGAGAGGAGAATTTGCGTATTGAGAGGGGAACAAGAACAAGAGAGAAATGAGTAGCGAAATTACGGAGTTACCCTTTTGTAATATAGTAAATGACGTTTTTGTCCTTGTGAGTTTTTTTTTTTTT

mRNA sequence

CCTTCTCATTTTCCCGTTCGCTTATTTATTTTCTTCCCTGAAAGAAACCAAGGAACCAGGAAACAAAATTGTCCCTGTTTTTTTTTCCTTCCCATTTTCTCCCTGAACTCAAATGCTCTTACAATGGTCGGTTTAAGCGTGATTCTGGAATCCAACCAGGGAGATTTTTGTAATAAATCATCCCAGGTTATCAGTAAAGCCTCCGTTATGAACCTCACCGTCAAGTCCTCTTCTCGCAACCCTAATTCCTGCCTCCAGACGACGTCGTTTCGCCTCCATTCCTGCTATCTCTGTAATCAGAAGCTCTTGCCTGGAAAGGACATCTATATGTACAAGGGAGATAGGGGATTTTGCAGCGTGGAGTGTAGATGCAGGCAGATTTTAATGGACGAAAAAGAGAGTATAATGAAGGAAAATTCATCGTCGAGTCGTAAAACGGCGTCGCTTTCGAGTTCGGAATCTGGTTCTTCTTCTTCGTCGACTTCAATGGCGGCTTCCCGTGACCGTAAATCCACGAGGAATCGGAGAGGAGAATTTGCGTATTGAGAGGGGAACAAGAACAAGAGAGAAATGAGTAGCGAAATTACGGAGTTACCCTTTTGTAATATAGTAAATGACGTTTTTGTCCTTGTGAGTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGTCGGTTTAAGCGTGATTCTGGAATCCAACCAGGGAGATTTTTGTAATAAATCATCCCAGGTTATCAGTAAAGCCTCCGTTATGAACCTCACCGTCAAGTCCTCTTCTCGCAACCCTAATTCCTGCCTCCAGACGACGTCGTTTCGCCTCCATTCCTGCTATCTCTGTAATCAGAAGCTCTTGCCTGGAAAGGACATCTATATGTACAAGGGAGATAGGGGATTTTGCAGCGTGGAGTGTAGATGCAGGCAGATTTTAATGGACGAAAAAGAGAGTATAATGAAGGAAAATTCATCGTCGAGTCGTAAAACGGCGTCGCTTTCGAGTTCGGAATCTGGTTCTTCTTCTTCGTCGACTTCAATGGCGGCTTCCCGTGACCGTAAATCCACGAGGAATCGGAGAGGAGAATTTGCGTATTGA

Protein sequence

MVGLSVILESNQGDFCNKSSQVISKASVMNLTVKSSSRNPNSCLQTTSFRLHSCYLCNQKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKESIMKENSSSSRKTASLSSSESGSSSSSTSMAASRDRKSTRNRRGEFAY

Homology

[Close]

BLAST of Carg18851 vs. NCBI nr
Match: XP_023515013.1 (uncharacterized protein LOC111779167 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MVGLSVILESNQGDFCNKSSQVISKASVMNLTVKSSSRNPNSCLQTTSFRLHSCYLCNQK 60
           MVGLSVILESNQGDFCNKSSQVISKASVMNLTV SSSRNPNSCLQTTSFRLHSCYLCNQK
Sbjct: 1   MVGLSVILESNQGDFCNKSSQVISKASVMNLTVNSSSRNPNSCLQTTSFRLHSCYLCNQK 60

Query: 61  LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESIMXXXXXXXXXXXXXXXXXXXXXXXXX 120
           LLPGKDIYMYKGDRGFCSVECRCRQILMDEKES  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXSTRNRRGEFAY 141
           XXXXXXX  STRNRRGEFAY
Sbjct: 121 XXXXXXXRKSTRNRRGEFAY 140

[Close]

BLAST of Carg18851 vs. NCBI nr
Match: XP_022930473.1 (protein MARD1 [Cucurbita moschata])

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MVGLSVILESNQGDFCNKSSQVISKASVMNLTVKSSSRNPNSCLQTTSFRLHSCYLCNQK 60
          MVGLSVILESNQGDFCNKSSQVISKASVMNLTV SSSRNPNSCLQTTS RLHSCYLCNQK
Sbjct: 1  MVGLSVILESNQGDFCNKSSQVISKASVMNLTVNSSSRNPNSCLQTTSLRLHSCYLCNQK 60

Query: 61 LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESIM 96
          LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESIM
Sbjct: 61 LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESIM 95

[Close]

BLAST of Carg18851 vs. NCBI nr
Match: XP_023000009.1 (uncharacterized protein LOC111494321 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 134/140 (95.71%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MVGLSVILESNQGDFCNKSSQVISKASVMNLTVKSSSRNPNSCLQTTSFRLHSCYLCNQK 60
           MVGLSVILESNQGDFCNKSSQVISKASVMNLTV SSSR+ NS LQTTSFRLHSCYLCNQK
Sbjct: 1   MVGLSVILESNQGDFCNKSSQVISKASVMNLTVNSSSRSSNSYLQTTSFRLHSCYLCNQK 60

Query: 61  LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESIMXXXXXXXXXXXXXXXXXXXXXXXXX 120
           LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESI XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  LLPGKDIYMYKGDRGFCSVECRCRQILMDEKESI-XXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXSTRNRRGEFAY 141
           XXXXXXXX STRNRRGEFAY
Sbjct: 121 XXXXXXXXKSTRNRRGEFAY 139

[Close]

BLAST of Carg18851 vs. NCBI nr
Match: XP_017408257.1 (PREDICTED: uncharacterized protein LOC108321120 [Vigna angularis] >BAT80283.1 hypothetical protein VIGAN_02328100 [Vigna angularis var. angularis])

HSP 1 Score: 110.5 bits (275), Expect = 4.5e-21
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MVGLSVILESNQGDFCNKSSQVISKASVMNLTVKSSSRNPNSCLQTTSFRLHSCYLCNQK 60
          M+GLSV+LE+ +G+   K+ QVISK +V++   K S    N+   + +F LH C+LC ++
Sbjct: 1  MLGLSVVLEAQKGNASKKTPQVISKTTVLSSMNKHSPSAVNASQHSPTF-LHQCFLCRKR 60

Query: 61 LLPGKDIYMYKGDRGFCSVECRCRQILMDEKES 94
          LLPGKDIYMYKGDR FCSVECRC+QI MDE+ES
Sbjct: 61 LLPGKDIYMYKGDRAFCSVECRCKQIFMDEEES 92

[Close]

BLAST of Carg18851 vs. NCBI nr
Match: XP_007138931.1 (hypothetical protein PHAVU_009G250000g [Phaseolus vulgaris] >ESW10925.1 hypothetical protein PHAVU_009G250000g [Phaseolus vulgaris])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MVGLSVILESNQGDFCNKSSQVISKASVMNLTVK--SSSRNPNSCLQTTSFRLHSCYLCN 60
          MVGLSV+LE+ +G    K+ QVISK ++++   K  +SS + +S  Q  +F LH+C LC 
Sbjct: 1  MVGLSVVLEAQRGSATKKTPQVISKTTMLSTINKHSASSASHHSAFQEPTF-LHTCSLCR 60

Query: 61 QKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKES 94
          ++LLPGKDIYMYKGDR FCSVECRC+QI MDE+ES
Sbjct: 61 KRLLPGKDIYMYKGDRAFCSVECRCKQIFMDEEES 94

[Close]

BLAST of Carg18851 vs. TAIR10
Match: AT5G49120.1 (Protein of unknown function (DUF581))

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 19  SSQVISKASVMNLT-VKSSSRNPNSCLQTTSFRLHSCYLCNQKLLPGKDIYMYKGDRGFC 78
           S +V++KA+++  T V + + N   C Q + F L  C+LC +KLLP KDIYMYKGDR FC
Sbjct: 37  SPKVVNKANIIVTTAVTTDTTNLRRCYQDSGF-LEHCFLCRRKLLPAKDIYMYKGDRAFC 96

Query: 79  SVECRCRQILMDEKESI 95
           SVECR +Q++MDE+ES+
Sbjct: 97  SVECRSKQMIMDEEESL 112

[Close]

BLAST of Carg18851 vs. TAIR10
Match: AT1G53885.1 (Protein of unknown function (DUF581))

HSP 1 Score: 64.3 bits (155), Expect = 6.8e-11
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 24 SKASVMNLTVKSSSR----NPNSCLQTTSFRLHSCYLCNQKLLPGKDIYMYKGDRGFCSV 83
          S+  + N+ +KSS R    NPN  +    F L +C+LCN++L   KD+YMY+GD GFCS 
Sbjct: 15 SREKLNNIVIKSSLRLNRSNPN--ISELCF-LKTCHLCNKQLHQDKDVYMYRGDLGFCSR 74

Query: 84 ECRCRQILMDEKESI 95
          ECR  Q+L+D+++ +
Sbjct: 75 ECRESQMLIDDRKEL 86

[Close]

BLAST of Carg18851 vs. TAIR10
Match: AT1G53903.1 (Protein of unknown function (DUF581))

HSP 1 Score: 64.3 bits (155), Expect = 6.8e-11
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 24 SKASVMNLTVKSSSR----NPNSCLQTTSFRLHSCYLCNQKLLPGKDIYMYKGDRGFCSV 83
          S+  + N+ +KSS R    NPN  +    F L +C+LCN++L   KD+YMY+GD GFCS 
Sbjct: 15 SREKLNNIVIKSSLRLNRSNPN--ISELCF-LKTCHLCNKQLHQDKDVYMYRGDLGFCSR 74

Query: 84 ECRCRQILMDEKESI 95
          ECR  Q+L+D+++ +
Sbjct: 75 ECRESQMLIDDRKEL 86

[Close]

BLAST of Carg18851 vs. TAIR10
Match: AT1G22160.1 (Protein of unknown function (DUF581))

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-10
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 51  LHSCYLCNQKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKE 93
           L SC LC + L+ G+DIYMY+GDR FCS+ECR +QI +DE++
Sbjct: 79  LRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERK 120

[Close]

BLAST of Carg18851 vs. TAIR10
Match: AT1G78020.1 (Protein of unknown function (DUF581))

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-10
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 31  LTVKSSSRNPNSCLQTTSFRLHSCYLCNQKLLPGKDIYMYKGDRGFCSVECRCRQILMDE 90
           +T + + R  +         L SC LC + L+PG+DIYMY+GD+ FCS ECR  Q+  DE
Sbjct: 70  VTPRGNLRRHSGDFSDAGHFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDE 129

Query: 91  KE 93
           ++
Sbjct: 130 RK 131

[Close]

BLAST of Carg18851 vs. Swiss-Prot
Match: sp|Q8LGS1|MARD1_ARATH (Protein MARD1 OS=Arabidopsis thaliana OX=3702 GN=MARD1 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-06
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 40  PNSCLQTTSFR--LHSCYLCNQKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKES 94
           P   ++T S    L  C+ C + L   +DIY+Y+G++GFCS ECR +++L+D+ E+
Sbjct: 208 PQPAMETKSTESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQMET 263

[Close]

BLAST of Carg18851 vs. TrEMBL
Match: tr|A0A0S3RI40|A0A0S3RI40_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G328100 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MVGLSVILESNQGDFCNKSSQVISKASVMNLTVKSSSRNPNSCLQTTSFRLHSCYLCNQK 60
          M+GLSV+LE+ +G+   K+ QVISK +V++   K S    N+   + +F LH C+LC ++
Sbjct: 1  MLGLSVVLEAQKGNASKKTPQVISKTTVLSSMNKHSPSAVNASQHSPTF-LHQCFLCRKR 60

Query: 61 LLPGKDIYMYKGDRGFCSVECRCRQILMDEKES 94
          LLPGKDIYMYKGDR FCSVECRC+QI MDE+ES
Sbjct: 61 LLPGKDIYMYKGDRAFCSVECRCKQIFMDEEES 92

[Close]

BLAST of Carg18851 vs. TrEMBL
Match: tr|V7B035|V7B035_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G250000g PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.7e-21
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MVGLSVILESNQGDFCNKSSQVISKASVMNLTVK--SSSRNPNSCLQTTSFRLHSCYLCN 60
          MVGLSV+LE+ +G    K+ QVISK ++++   K  +SS + +S  Q  +F LH+C LC 
Sbjct: 1  MVGLSVVLEAQRGSATKKTPQVISKTTMLSTINKHSASSASHHSAFQEPTF-LHTCSLCR 60

Query: 61 QKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKES 94
          ++LLPGKDIYMYKGDR FCSVECRC+QI MDE+ES
Sbjct: 61 KRLLPGKDIYMYKGDRAFCSVECRCKQIFMDEEES 94

[Close]

BLAST of Carg18851 vs. TrEMBL
Match: tr|A0A2G9H3E7|A0A2G9H3E7_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15343 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1   MVGLSVILESNQGDFCNKSSQVISKASVMNLTVKSSSRNPNSCLQTT------SFRLHSC 60
           MVGLSVILE+ +     KS QVISK S+    +K  S +P S L  +      S+ L  C
Sbjct: 54  MVGLSVILENYKDLSAEKSPQVISKGSM----IKPPSSSPTSPLSPSTKATYDSWFLDHC 113

Query: 61  YLCNQKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKES 94
           +LC QKLLPGKDIYMYKGD+GFCSVECRCRQI MDE+ES
Sbjct: 114 FLCKQKLLPGKDIYMYKGDKGFCSVECRCRQIFMDEEES 148

[Close]

BLAST of Carg18851 vs. TrEMBL
Match: tr|A0A2C9UC10|A0A2C9UC10_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G011100 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-20
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MVGLSVILESNQGDFCNKSSQVISKASVM-----NLTVKSSSRNPNSCLQTTSFRLHSCY 60
          MVGLS++LE+ +G    K+ QVISKA++M     +    SSS +  S L   +F L  C+
Sbjct: 1  MVGLSIVLEAQKGGVNKKAPQVISKATMMINKPSSPLPSSSSLSFYSSLPAPTF-LEHCF 60

Query: 61 LCNQKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKESI 95
          LC QKLLPGKDIYMYKGDR FCSVECRCRQI MDE+E++
Sbjct: 61 LCGQKLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEETL 98

[Close]

BLAST of Carg18851 vs. TrEMBL
Match: tr|A0A1S3TZI6|A0A1S3TZI6_VIGRR (uncharacterized protein LOC106760220 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760220 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1  MVGLSVILESNQGDFCNKSS-QVISKASVMNLTVKSS----SRNPNSCLQTTSFRLHSCY 60
          M+GLSV+LE+ +G+  +K + QVISK +V++   K S    + + +S  Q  +F LH C+
Sbjct: 1  MLGLSVVLEAQKGNNASKKTPQVISKTTVLSSMNKHSPSAVNASQHSPFQEPTF-LHQCF 60

Query: 61 LCNQKLLPGKDIYMYKGDRGFCSVECRCRQILMDEKES 94
          LC ++LLPGKDIYMYKGDR FCSVECRC+QI MDE+ES
Sbjct: 61 LCRKRLLPGKDIYMYKGDRAFCSVECRCKQIFMDEEES 97

The following BLAST results are available for this feature:

BLAST of Carg18851 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515013.1	7.4e-48	96.43	uncharacterized protein LOC111779167 [Cucurbita pepo subsp. pepo]	[more]
XP_022930473.1	1.6e-45	97.89	protein MARD1 [Cucurbita moschata]	[more]
XP_023000009.1	2.2e-44	95.71	uncharacterized protein LOC111494321 [Cucurbita maxima]	[more]
XP_017408257.1	4.5e-21	56.99	PREDICTED: uncharacterized protein LOC108321120 [Vigna angularis] >BAT80283.1 hy...	[more]
XP_007138931.1	1.0e-20	57.89	hypothetical protein PHAVU_009G250000g [Phaseolus vulgaris] >ESW10925.1 hypothet...	[more]

BLAST of Carg18851 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49120.1	2.8e-17	53.25	Protein of unknown function (DUF581)	[more]
AT1G53885.1	6.8e-11	44.00	Protein of unknown function (DUF581)	[more]
AT1G53903.1	6.8e-11	44.00	Protein of unknown function (DUF581)	[more]
AT1G22160.1	3.4e-10	59.52	Protein of unknown function (DUF581)	[more]
AT1G78020.1	9.8e-10	41.94	Protein of unknown function (DUF581)	[more]

BLAST of Carg18851 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LGS1\|MARD1_ARATH	2.8e-06	39.29	Protein MARD1 OS=Arabidopsis thaliana OX=3702 GN=MARD1 PE=2 SV=2	[more]

BLAST of Carg18851 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0S3RI40\|A0A0S3RI40_PHAAN	3.0e-21	56.99	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G...	[more]
tr\|V7B035\|V7B035_PHAVU	6.7e-21	57.89	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G250000g PE=4 ...	[more]
tr\|A0A2G9H3E7\|A0A2G9H3E7_9LAMI	2.5e-20	59.60	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15343 P...	[more]
tr\|A0A2C9UC10\|A0A2C9UC10_MANES	3.3e-20	57.58	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G011100 PE=4 SV=...	[more]
tr\|A0A1S3TZI6\|A0A1S3TZI6_VIGRR	3.7e-19	55.10	uncharacterized protein LOC106760220 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007650	Zf-FLZ_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18851-RA	Carg18851-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007650	Zf-FLZ domain	PFAM	PF04570	zf-FLZ	coord: 50..91 e-value: 4.7E-21 score: 73.9
IPR007650	Zf-FLZ domain	PROSITE	PS51795	ZF_FLZ	coord: 49..93 score: 22.282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..126
None	No IPR available	PANTHER	PTHR33059:SF10	SUBFAMILY NOT NAMED	coord: 1..140
None	No IPR available	PANTHER	PTHR33059	FAMILY NOT NAMED	coord: 1..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18851	Cla009292	Watermelon (97103) v1	carwmB0701
Carg18851	Csa3G164460	Cucumber (Chinese Long) v2	carcuB0723
Carg18851	Csa6G319750	Cucumber (Chinese Long) v2	carcuB0724
Carg18851	MELO3C006678	Melon (DHL92) v3.5.1	carmeB0701
Carg18851	MELO3C021315	Melon (DHL92) v3.5.1	carmeB0700
Carg18851	ClCG05G006210	Watermelon (Charleston Gray)	carwcgB0680
Carg18851	ClCG06G005010	Watermelon (Charleston Gray)	carwcgB0681
Carg18851	CSPI03G14580	Wild cucumber (PI 183967)	carcpiB0738
Carg18851	CSPI06G17530	Wild cucumber (PI 183967)	carcpiB0739
Carg18851	Cucsa.252940	Cucumber (Gy14) v1	carcgyB0788
Carg18851	Cucsa.069190	Cucumber (Gy14) v1	carcgyB0785
Carg18851	CmaCh08G012340	Cucurbita maxima (Rimu)	carcmaB0988
Carg18851	CmaCh06G015130	Cucurbita maxima (Rimu)	carcmaB0986
Carg18851	CmoCh08G012090	Cucurbita moschata (Rifu)	carcmoB0960
Carg18851	CmoCh06G015090	Cucurbita moschata (Rifu)	carcmoB0959
Carg18851	Lsi09G014430	Bottle gourd (USVL1VR-Ls)	carlsiB641
Carg18851	Lsi05G015520	Bottle gourd (USVL1VR-Ls)	carlsiB642
Carg18851	Cp4.1LG08g04960	Cucurbita pepo (Zucchini)	carcpeB0987
Carg18851	CsGy6G016960	Cucumber (Gy14) v2	carcgybB0701
Carg18851	CsGy3G014730	Cucumber (Gy14) v2	carcgybB0700
Carg18851	MELO3C021315.2	Melon (DHL92) v3.6.1	carmedB0713
Carg18851	MELO3C006678.2	Melon (DHL92) v3.6.1	carmedB0714
Carg18851	CsaV3_6G023890	Cucumber (Chinese Long) v3	carcucB0742
Carg18851	CsaV3_3G014820	Cucumber (Chinese Long) v3	carcucB0741
Carg18851	Cla97C05G087760	Watermelon (97103) v2	carwmbB0734
Carg18851	Cla97C06G114490	Watermelon (97103) v2	carwmbB0735
Carg18851	Bhi12G001810	Wax gourd	carwgoB0827
Carg18851	Bhi01G000733	Wax gourd	carwgoB0828

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18851	Carg17331	Silver-seed gourd	carcarB543

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18851	Silver-seed gourd	carcarB085
Carg18851	Silver-seed gourd	carcarB316
Carg18851	Cucurbita maxima (Rimu)	carcmaB0984
Carg18851	Cucurbita maxima (Rimu)	carcmaB0985
Carg18851	Cucurbita moschata (Rifu)	carcmoB0957
Carg18851	Cucurbita moschata (Rifu)	carcmoB0958
Carg18851	Cucurbita pepo (Zucchini)	carcpeB0984
Carg18851	Cucurbita pepo (Zucchini)	carcpeB0985
Carg18851	Cucurbita pepo (Zucchini)	carcpeB0986
Carg18851	Watermelon (97103) v1	carwmB0700