Carg18499 (gene) Silver-seed gourd

NameCarg18499
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHydroxyproline-rich glycoprotein family protein
LocationCucurbita_argyrosperma_scaffold_109 : 125899 .. 126378 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTCCCGATTTCTCGCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGCTTTCCTCTCGGCACTGCTCTCCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCATTGGGATAAACTCAGATCCATCCGCCGTTCCGCTGCCCAAGCACTACATCACGATCATCATCTCCTCCCTTCGTCTCCATCCAAATCCAACTCTACTGCACTGGTAATTTTAATTCCGCTGCTTCTTCATCATTTCCTTTCTTTCTTTCGATTGTTTAAACGAGGAATTGATTTTTTGGAATAGGATTTGGAGAAGAATCAAAGAGAGAGCTTATCGGTGGTGATGCCTGGGGATTCGATTCCCAAATTCATCGCGATGCCCTGCCCTAGAGAGCCGCCTCGGCCGGAGATGATTCATGTGAAAGTGGAGAAGCCGCCGAAACCGCCGCGAATCGCGATTCCTTTCTATTAG

mRNA sequence

ATGGAGACTCCCGATTTCTCGCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGCTTTCCTCTCGGCACTGCTCTCCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCATTGGGATAAACTCAGATCCATCCGCCGTTCCGCTGCCCAAGCACTACATCACGATCATCATCTCCTCCCTTCGTCTCCATCCAAATCCAACTCTACTGCACTGGATTTGGAGAAGAATCAAAGAGAGAGCTTATCGGTGGTGATGCCTGGGGATTCGATTCCCAAATTCATCGCGATGCCCTGCCCTAGAGAGCCGCCTCGGCCGGAGATGATTCATGTGAAAGTGGAGAAGCCGCCGAAACCGCCGCGAATCGCGATTCCTTTCTATTAG

Coding sequence (CDS)

ATGGAGACTCCCGATTTCTCGCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGCTTTCCTCTCGGCACTGCTCTCCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCATTGGGATAAACTCAGATCCATCCGCCGTTCCGCTGCCCAAGCACTACATCACGATCATCATCTCCTCCCTTCGTCTCCATCCAAATCCAACTCTACTGCACTGGATTTGGAGAAGAATCAAAGAGAGAGCTTATCGGTGGTGATGCCTGGGGATTCGATTCCCAAATTCATCGCGATGCCCTGCCCTAGAGAGCCGCCTCGGCCGGAGATGATTCATGTGAAAGTGGAGAAGCCGCCGAAACCGCCGCGAATCGCGATTCCTTTCTATTAG

Protein sequence

METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHHDHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEKPPKPPRIAIPFY
BLAST of Carg18499 vs. NCBI nr
Match: XP_022962719.1 (uncharacterized protein At5g65660-like [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 5.5e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK
Sbjct: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 121 PPKPPRIAIPFY 132

BLAST of Carg18499 vs. NCBI nr
Match: XP_023518276.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 1.8e-67
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSN TALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMI VKVEK
Sbjct: 120 DHHLLPSSPSKSNPTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 179

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 180 PPKPPRIAIPFY 191

BLAST of Carg18499 vs. NCBI nr
Match: XP_023003846.1 (uncharacterized protein At5g65660-like [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 4.0e-67
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMI V VEK
Sbjct: 120 DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVIVEK 179

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 180 PPKPPRIAIPFY 191

BLAST of Carg18499 vs. NCBI nr
Match: XP_022133072.1 (uncharacterized protein At5g65660 [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 9.8e-58
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
            H  LPSSPSKSN  +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMI VKVEK
Sbjct: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIA+PFY
Sbjct: 121 PPKPPRIAVPFY 129

BLAST of Carg18499 vs. NCBI nr
Match: XP_023543383.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 2.3e-54
Identity = 109/132 (82.58%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+PDFSPPHADASRPSL FPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q    
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---- 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
                P+SPSK   T+LDLEKNQR+SLSV+MPGDSIPKFIAMPCPREPPRPEM+ VKVEK
Sbjct: 61  ---FNPTSPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIA+PFY
Sbjct: 121 PPKPPRIAVPFY 125

BLAST of Carg18499 vs. TAIR10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-36
Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 0

Query: 3   TPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHHDH 62
           T DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RS+RRS A       
Sbjct: 4   TQDFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANG--RPS 63

Query: 63  HLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEKPP 122
             + S+P K      +++K Q  S+ V+MPGD+ PKFIA+PCP  PPRPE + V V+ PP
Sbjct: 64  ADIESNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPP 123

Query: 123 -----KPPRIAIPFY 133
                KP R  +P Y
Sbjct: 124 QSPPVKPARFPVPLY 136

BLAST of Carg18499 vs. Swiss-Prot
Match: sp|Q9LSK9|Y5566_ARATH (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-35
Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 0

Query: 3   TPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHHDH 62
           T DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RS+RRS A       
Sbjct: 4   TQDFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANG--RPS 63

Query: 63  HLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEKPP 122
             + S+P K      +++K Q  S+ V+MPGD+ PKFIA+PCP  PPRPE + V V+ PP
Sbjct: 64  ADIESNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPP 123

Query: 123 -----KPPRIAIPFY 133
                KP R  +P Y
Sbjct: 124 QSPPVKPARFPVPLY 136

BLAST of Carg18499 vs. TrEMBL
Match: tr|A0A1S3B1W3|A0A1S3B1W3_CUCME (uncharacterized protein At5g65660 OS=Cucumis melo OX=3656 GN=LOC103484911 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-51
Identity = 104/132 (78.79%), Postives = 113/132 (85.61%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+P+FSPPH+D SRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRS +Q L  
Sbjct: 1   MESPNFSPPHSDPSRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSTSQPLRD 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
            H L P SP   ++   DLEKNQRESLSV+MPGDSIPKFIAMPCPREP RPEMI VKVEK
Sbjct: 61  RHDLHPQSPPSKSNPTQDLEKNQRESLSVLMPGDSIPKFIAMPCPREPLRPEMIEVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           P KP RIA+PFY
Sbjct: 121 PLKPLRIAVPFY 132

BLAST of Carg18499 vs. TrEMBL
Match: tr|A0A0A0KGL6|A0A0A0KGL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497240 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 108/133 (81.20%), Postives = 116/133 (87.22%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+P+FSPPH+D SRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRS++Q L  
Sbjct: 1   MESPNFSPPHSDPSRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSSSQPLRD 60

Query: 61  DHHL-LPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVE 120
             HL L S PSKSN T  DLEKNQRESLSV+MPGDSIPKFIAMPCPREP RPE I VKVE
Sbjct: 61  HRHLHLQSPPSKSNPTP-DLEKNQRESLSVLMPGDSIPKFIAMPCPREPLRPETIEVKVE 120

Query: 121 KPPKPPRIAIPFY 133
           KP KP RIA+PFY
Sbjct: 121 KPVKPLRIAVPFY 132

BLAST of Carg18499 vs. TrEMBL
Match: tr|A0A061DHB3|A0A061DHB3_THECC (Hydroxyproline-rich glycoprotein family protein OS=Theobroma cacao OX=3641 GN=TCM_000913 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-42
Identity = 87/132 (65.91%), Postives = 103/132 (78.03%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME  D SPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDKLRS+RRS +     
Sbjct: 1   MENQDLSPPHVDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKLRSLRRSISDGTGP 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           D   + +SPSKS    +DL++NQ +SL V+MPGD IPKFIA PCP EPP P+ + VKV+K
Sbjct: 61  DAD-IEASPSKSKPEYMDLKENQSQSLPVLMPGDQIPKFIAFPCPCEPPGPDKVEVKVQK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPR  +P Y
Sbjct: 121 PPKPPRFPVPLY 131

BLAST of Carg18499 vs. TrEMBL
Match: tr|A0A0D2PD18|A0A0D2PD18_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G229800 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.0e-42
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME  + SPPH DASRPSLGFPLGTALLL+++F+LSGIFSCCYHWDKLRS+R S A    H
Sbjct: 1   MENHNLSPPHVDASRPSLGFPLGTALLLIIVFSLSGIFSCCYHWDKLRSLRGSFA----H 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
            H  + +SPSKSN  +  L+KNQ +S SV+MPGD+IPKFIA+PCP EPPR + + VKVEK
Sbjct: 61  PHVDIEASPSKSNPHSPVLKKNQSQSFSVLMPGDAIPKFIALPCPCEPPRVDKVEVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPR  +P Y
Sbjct: 121 PPKPPRFPVPLY 128

BLAST of Carg18499 vs. TrEMBL
Match: tr|A0A2H5NF83|A0A2H5NF83_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_039830 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 8.5e-42
Identity = 91/133 (68.42%), Postives = 105/133 (78.95%), Query Frame = 0

Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME  DFSPPH DASRPSLGFPLGTALLL+VIF+LSGIFSCCYHWDK+RS+RRS ++  H 
Sbjct: 1   MENQDFSPPHGDASRPSLGFPLGTALLLIVIFSLSGIFSCCYHWDKVRSLRRSLSE--HA 60

Query: 61  DHHL-LPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVE 120
           D       SPSKS +  +DL+KNQ +SL V+MPGD IPKFIA+PCP EPPR E I VKV+
Sbjct: 61  DPEADNEGSPSKSKAAHMDLKKNQSQSLPVLMPGDQIPKFIALPCPCEPPRAEKIVVKVQ 120

Query: 121 KPPKPPRIAIPFY 133
           KPPK PR  +P Y
Sbjct: 121 KPPKLPRFPVPLY 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022962719.15.5e-69100.00uncharacterized protein At5g65660-like [Cucurbita moschata][more]
XP_023518276.11.8e-6798.48uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo][more]
XP_023003846.14.0e-6798.48uncharacterized protein At5g65660-like [Cucurbita maxima][more]
XP_022133072.19.8e-5887.12uncharacterized protein At5g65660 [Momordica charantia][more]
XP_023543383.12.3e-5482.58uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G65660.12.6e-3657.78hydroxyproline-rich glycoprotein family protein[more]
Match NameE-valueIdentityDescription
sp|Q9LSK9|Y5566_ARATH4.6e-3557.78Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B1W3|A0A1S3B1W3_CUCME4.5e-5178.79uncharacterized protein At5g65660 OS=Cucumis melo OX=3656 GN=LOC103484911 PE=4 S... [more]
tr|A0A0A0KGL6|A0A0A0KGL6_CUCSA1.3e-5081.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497240 PE=4 SV=1[more]
tr|A0A061DHB3|A0A061DHB3_THECC3.8e-4265.91Hydroxyproline-rich glycoprotein family protein OS=Theobroma cacao OX=3641 GN=TC... [more]
tr|A0A0D2PD18|A0A0D2PD18_GOSRA5.0e-4266.67Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G229800 PE=4 ... [more]
tr|A0A2H5NF83|A0A2H5NF83_CITUN8.5e-4268.42Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_039830 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037699At5g65660-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18499-RACarg18499-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..82
IPR037699Uncharacterized protein At5g65660-likePANTHERPTHR34291FAMILY NOT NAMEDcoord: 7..125