Carg18491 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18491
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Elongator complex protein 4
Location	Cucurbita_argyrosperma_scaffold_109 : 87451 .. 90877 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTATTAACCCAACTATGGCAGCTACGACAAAGCCTAGGACAAGCAGCTTCTCCCGCAACCTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATTTCATCCGGAATACCAGACCTTGACAGTACTTTCTGCATCATATTCATCAGTTCAAAATTGTTGTGAATTGAAATGTTGAAGACTTGTAATCTATACCCATGTTATTCATTTGGACTAGCTGGCAATATAAGAAGTATTTTGGCGAAAGTCAAGAGAGCGTCAATGCCATTGGTAAGCTTACTGAAACCTCAACCTAATAATTTCTTTTCCCGGAATTTGGTCTCAATTTATAACGACCAATGATTTGTGTTGGTTGTGTGGTGTAACTGCTCGTCCATATTATGGTGAAGCTTTCAAGGAAAAGTACATGTTTCAGTCCAATTTTCTTCAGTATGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTACCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCTTCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATCCTCAAATATCGAACAAAGAACTCCTAAAGAAAAGGAGCCAAGCCCCTCCTCGAAGGCAGTCAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCAGGGGAGGTGTTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGGTGTGATATGGGTTTTATTATATCTTTAGTTCACGTTTATTGCATTCCTTCTAGTCTTTTTTTTCTTTCTTTTTCCTTTACCTCCTGAGATTTTATCCCTTTTTCCCTTAAGGATGGGAGATATGTTCTTGTGTAGTAACCAAATACTGATTCATTTGCGTGGTTGGATCTTGCATTATAAATGTTAAAAAGAATGCATCTTGAGATCTGTTCATTCCCCCCCACCCCATAATGGCCACTCTTCCTGACACAAGTTTAATATGGGTGCAATATTATTCTTATAGGGTTAATTATTTAATGCTTGTACAGATGGTAAATGCGAGTTTTGCAATGACTTTGATTTGCGAAAGCCCTTTGACAGACATTTTTTCAGCGGGAAGCATGTGGAATGTGTTAGTATACTAGATTCTTCTAGTCTTTCTACTACTCTTGATCGTTGCGCCACATTCCTATCACAAGTTCCAAGGTAATGTTTACCTCTACTTTTCCCTCTAGAATGTATCAGTTTCAGTCATTGCATTAGTTTGTAAAGTATATTCAATTGAATTTATTGTAAAAGATGTCTAGCAACTATTCTTGTTTGATGTAACGAAGAAGTGCTAATCTGTTTTTGAGGTGGCTGGAGATGGAAGTAGTTAGATTGAGACCTTGGGTACAGATCCTTCTTTTGTATTTGGAGAAAGTTTGTTAAACAGAAATAGGATCTTCTTATTCAGTGTAGAGGTCCTTGGGATTTGGAAACATAATTAGGCACCAAATTGCATAATGTAGCGTTTTCATGAAATGTAGTTTTCGCCGATGGTAACTACCTGAGTTCATTTTCTACCTCTAAATGCTAGAGAAGAACTTCAGGCCAATCTGAAATGAATTATTCTTTCTTTCATCAATGGTTTATCCCATTTTCAGATTTGGTATTCAAGAAGACTTCTTTGCTAGATTGTGAGTGGTGTGGAATTTATCTGATATAATGCCTGAATTAGGGATTGAATTCATTATTTTATTTATTAAATGTGAATATGTGAAGGATATTCATAATGTGGGTGGACTTGTCCCTTGTCCATCTACATTGTTGTATTATTTGTTGAGGTCCTCTTTCATCCGTACTGCTCTGCAACCTTGTGCATTCTCTTATTTTTCCGTATGAAAATTTTGTTTTCAAAAGACAAGAAACAGGAAAAGAAAATGTGAATCCGTCAATTGGGTAGCCTGAAATTCATTTTAATTTTCGTTTTTTACATATTTGAATGTGTTCATTCTGTTCCTTTATCTGGATGATCATCTTCCTTTGTTGCTGACAATATATTGTACTTACTTGGATGTCACATGACAATTCCAGAAATGACGGCAATATATCCTCTGCTGGCCGTATTGCCATTCAATCGTTATGTGCTCCACAATGTGATCATTCCAACATGGTTAGTAACAAATTGAATTTACGCTCTTTGGTTACATGATTGTTTGCTCGATTATACTTGATAAATCTCTGTGCTCACTTTCCTCCATAGAAGATTTGAAACGGGGTATTGGATTAAAAAAAAACCTTCGTCTGTAATCTAAAATTTAAAACAAGTGTTTTCTTTTTTTTTTTTCTCGATCATTTGAGCCCTCATTGTAAAGCTGGAGCTGCAGGAATGGGAAATGCTTTCCTTTTTAAGGTCTCTGAAAAGCATGCTAAGGTCCTCAAATGCAGTAGCTGTAGTGACGTTTTCCCCTTCCCTACTCTTGCCATCCTTCTCTAAAAGATGGCAGCACATGGCAGATACCTTGCTTTCTGTCAAGGCAATCCCAGGTTTAGACGTAGCATCTCAATTTGCCTTATTGTCTCTAGCATCAATGAGATATTGACTAAAACTATTGCAGATGAGGATAAGGAATTAGCAAATCTCCTCACTGGTTACCAAGACATGGTTGGCCTTCTCAATATTCATAAAGTGGCTCAAATCAATACGCAGGTATGCATACCTGTAACTTAGGGATGGACCCAACGGTGAAATGCTGCTTCTGCAAAATTTTCTTCCAATGCTTGCTACTTCACTGTTCTGCATATTTCTATTGGTTTTGGTCCATACTTCATTCATGTGCCATGATTGAGTGCAATATTTGCTAGCAGCTCTGAATGGTTATTGACTCTTAAAGCCATAGATAGCGTTCTAATGTATTTATTTCTTATTAGGGTTGATACGCATTATTCTTTGGGTTGGTTTAATTTCCTATATGACTGATATCTCCTTTTTAGCTGGCTTTTACTCATGCTCATGGATCCAGAATTTGACTGCAGGTTCCAAGAATTCTTGAGGCGACTACATTCTCTATAAAGTTGCAAAAGAGAAGGTTTTTAGTTTTAGAATGTCTTAATCAAGCGCCTGTTGATGGTTCAACCGGGAGCTCATATGGCTCTACTGGGAGTTGTTCTGGGTCCTCCAAGACAGGTTCTCTCGACTTTTAGTTTCCAAATGATATTAGCCTAAAGAATTTGAGAGTGGATTTTTTAAAGTTAAATTTGAAGTTTAGGATGATTGTTGAATGTTTATATTATCTCCCTCTTTGGCCTCCATTCCTGTATTA

mRNA sequence

AGTATTAACCCAACTATGGCAGCTACGACAAAGCCTAGGACAAGCAGCTTCTCCCGCAACCTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATTTCATCCGGAATACCAGACCTTGACAGTACTTTCTGCATCATATTCATCAGTTCAAAATTGTTCTGGCAATATAAGAAGTATTTTGGCGAAAGTCAAGAGAGCGTCAATGCCATTGATGGTAAATGCGAGTTTTGCAATGACTTTGATTTGCGAAAGCCCTTTGACAGACATTTTTTCAGCGGGAAGCATGTGGAATGTGTTAGTATACTAGATTCTTCTAGTCTTTCTACTACTCTTGATCGTTGCGCCACATTCCTATCACAAGTTCCAAGAAATGACGGCAATATATCCTCTGCTGGCCGTATTGCCATTCAATCGTTATGTGCTCCACAATGTGATCATTCCAACATGCTGGAGCTGCAGGAATGGGAAATGCTTTCCTTTTTAAGGTCTCTGAAAAGCATGCTAAGGTCCTCAAATGCAGTAGCTGTAGTGACGTTTTCCCCTTCCCTACTCTTGCCATCCTTCTCTAAAAGATGGCAGCACATGGCAGATACCTTGCTTTCTGTCAAGGCAATCCCAGATGAGGATAAGGAATTAGCAAATCTCCTCACTGGTTACCAAGACATGGTTGGCCTTCTCAATATTCATAAAGTGGCTCAAATCAATACGCAGGTTCCAAGAATTCTTGAGGCGACTACATTCTCTATAAAGTTGCAAAAGAGAAGGTTTTTAGTTTTAGAATGTCTTAATCAAGCGCCTGTTGATGGTTCAACCGGGAGCTCATATGGCTCTACTGGGAGTTGTTCTGGGTCCTCCAAGACAGGTTCTCTCGACTTTTAGTTTCCAAATGATATTAGCCTAAAGAATTTGAGAGTGGATTTTTTAAAGTTAAATTTGAAGTTTAGGATGATTGTTGAATGTTTATATTATCTCCCTCTTTGGCCTCCATTCCTGTATTA

Coding sequence (CDS)

AGTATTAACCCAACTATGGCAGCTACGACAAAGCCTAGGACAAGCAGCTTCTCCCGCAACCTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATTTCATCCGGAATACCAGACCTTGACAGTACTTTCTGCATCATATTCATCAGTTCAAAATTGTTCTGGCAATATAAGAAGTATTTTGGCGAAAGTCAAGAGAGCGTCAATGCCATTGATGGTAAATGCGAGTTTTGCAATGACTTTGATTTGCGAAAGCCCTTTGACAGACATTTTTTCAGCGGGAAGCATGTGGAATGTGTTAGTATACTAGATTCTTCTAGTCTTTCTACTACTCTTGATCGTTGCGCCACATTCCTATCACAAGTTCCAAGAAATGACGGCAATATATCCTCTGCTGGCCGTATTGCCATTCAATCGTTATGTGCTCCACAATGTGATCATTCCAACATGCTGGAGCTGCAGGAATGGGAAATGCTTTCCTTTTTAAGGTCTCTGAAAAGCATGCTAAGGTCCTCAAATGCAGTAGCTGTAGTGACGTTTTCCCCTTCCCTACTCTTGCCATCCTTCTCTAAAAGATGGCAGCACATGGCAGATACCTTGCTTTCTGTCAAGGCAATCCCAGATGAGGATAAGGAATTAGCAAATCTCCTCACTGGTTACCAAGACATGGTTGGCCTTCTCAATATTCATAAAGTGGCTCAAATCAATACGCAGGTTCCAAGAATTCTTGAGGCGACTACATTCTCTATAAAGTTGCAAAAGAGAAGGTTTTTAGTTTTAGAATGTCTTAATCAAGCGCCTGTTGATGGTTCAACCGGGAGCTCATATGGCTCTACTGGGAGTTGTTCTGGGTCCTCCAAGACAGGTTCTCTCGACTTTTAG

Protein sequence

SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFCIIFISSKLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLNIHKVAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGSCSGSSKTGSLDF

Homology

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_022963340.1 (elongator complex protein 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 512.3 bits (1318), Expect = 1.1e-141
Identity = 281/367 (76.57%), Postives = 286/367 (77.93%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDSKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVSILDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
           SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLRSLK
Sbjct: 181 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL
Sbjct: 241 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 300

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_022963337.1 (elongator complex protein 4 isoform X1 [Cucurbita moschata] >XP_022963338.1 elongator complex protein 4 isoform X1 [Cucurbita moschata] >XP_022963339.1 elongator complex protein 4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 501.5 bits (1290), Expect = 2.0e-138
Identity = 281/384 (73.18%), Postives = 286/384 (74.48%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDSKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVSILDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 180

Query: 186 SLSTTLDRCATFLSQVP-----------------RNDGNISSAGRIAIQSLCAPQCDHSN 245
           SLSTTLDRCATFLSQVP                 RNDGNISSAGRIAIQSLCAPQCDHSN
Sbjct: 181 SLSTTLDRCATFLSQVPRFGIQEDFITWMSHDNSRNDGNISSAGRIAIQSLCAPQCDHSN 240

Query: 246 MLELQEWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE 303
           M    EWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE
Sbjct: 241 M----EWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE 300

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_023003256.1 (elongator complex protein 4 [Cucurbita maxima] >XP_023003257.1 elongator complex protein 4 [Cucurbita maxima] >XP_023003258.1 elongator complex protein 4 [Cucurbita maxima])

HSP 1 Score: 500.7 bits (1288), Expect = 3.4e-138
Identity = 275/367 (74.93%), Postives = 282/367 (76.84%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           M ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MEATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDNKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQE+VNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVS+LDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQENVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
           SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLRSLK
Sbjct: 181 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL
Sbjct: 241 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 300

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_004143437.1 (PREDICTED: elongator complex protein 4 isoform X1 [Cucumis sativus] >KGN48686.1 hypothetical protein Csa_6G497360 [Cucumis sativus])

HSP 1 Score: 470.7 bits (1210), Expect = 3.7e-129
Identity = 252/365 (69.04%), Postives = 268/365 (73.42%), Query Frame = 0


Query: 8   ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC------------- 67
           A TKPRTSSFSRN SSAHSS+TPG KHGPNGTTFISSGIPDLD   C             
Sbjct: 2   AATKPRTSSFSRNFSSAHSSKTPGFKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVME 61

Query: 68  ------------------------IIFISS------------------------------ 127
                                   +++ S                               
Sbjct: 62  DAEAPHHMLLLRNFMSQGLVHDQPLLYASPSRDPRGFLGTLPSPGASKDDKSRDNSTEQE 121

Query: 128 ---KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSL 187
              ++ WQYKKYFG+ QES NAID K EFCNDFDLR+PFDRHFFSGKHVECVSILDSSSL
Sbjct: 122 KGLRIAWQYKKYFGDDQESANAIDSKYEFCNDFDLRRPFDRHFFSGKHVECVSILDSSSL 181

Query: 188 STTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSM 247
           ST  DRCATFLSQVPRNDGNISS GRIAIQSLCAPQCDHSNM    EWEMLSFLRSLKSM
Sbjct: 182 STLRDRCATFLSQVPRNDGNISSGGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLKSM 241

Query: 248 LRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLN 303
           +RSSNAVAVVTF PSLLLPSFSKRWQHMADTLLSV+AIPDEDKELA LLTGYQDMVGLLN
Sbjct: 242 VRSSNAVAVVTFPPSLLLPSFSKRWQHMADTLLSVRAIPDEDKELAKLLTGYQDMVGLLN 301

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_023518134.1 (elongator complex protein 4, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 466.8 bits (1200), Expect = 5.4e-128
Identity = 253/340 (74.41%), Postives = 259/340 (76.18%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDNKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVSILDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
           SLSTTLDRCATFLSQVPRNDGNISSAGRI+IQSLCAPQCDHSNM    EWEMLSFLRSLK
Sbjct: 181 SLSTTLDRCATFLSQVPRNDGNISSAGRISIQSLCAPQCDHSNM----EWEMLSFLRSLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 276
           SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL
Sbjct: 241 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 300

[Close]

BLAST of Carg18491 vs. TAIR10
Match: AT3G11220.2 (Paxneb protein-related)

HSP 1 Score: 302.4 bits (773), Expect = 3.2e-82
Identity = 188/385 (48.83%), Postives = 227/385 (58.96%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTF-------CIIFI 65
           MAA     +SSFSRN+S   S Q PGLK GPNGT FISSGI DLD           ++ +
Sbjct: 1   MAAPNVRSSSSFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 61  MEDPEAPHHMDLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPD 120

Query: 126 ---SSKLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
              S ++ WQY+KY  E+Q+  NAID   ++ NDFD+RKP +R F SG+ ++CVS+LDSS
Sbjct: 121 QGESLRIAWQYRKYL-ENQK--NAID---DYSNDFDMRKPLERQFLSGRPIDCVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVP------------------RNDGNISSAGRIAIQSLCAPQCDHS 245
            LS   D CATFLS+ P                  +N  NI+S GRIAIQS C+P C++S
Sbjct: 181 DLSIAQDHCATFLSKFPSKFCSSSILFTSLLYFQAQNSSNIASIGRIAIQSFCSPLCEYS 240

Query: 246 NMLELQEWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPD 303
                +E +MLSF+R LKSML  SNAVA+VTF PSLL PS SKR QHMADTLLS+KAIPD
Sbjct: 241 E----KESDMLSFIRLLKSMLMVSNAVAIVTFPPSLLSPSSSKRLQHMADTLLSIKAIPD 300

[Close]

BLAST of Carg18491 vs. Swiss-Prot
Match: sp|Q9C778|ELP4_ARATH (Elongator complex protein 4 OS=Arabidopsis thaliana OX=3702 GN=ELP4 PE=1 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.6e-85
Identity = 189/367 (51.50%), Postives = 227/367 (61.85%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTF-------CIIFI 65
           MAA     +SSFSRN+S   S Q PGLK GPNGT FISSGI DLD           ++ +
Sbjct: 1   MAAPNVRSSSSFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 61  MEDPEAPHHMDLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPD 120

Query: 126 ---SSKLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
              S ++ WQY+KY  E+Q+  NAID   ++ NDFD+RKP +R F SG+ ++CVS+LDSS
Sbjct: 121 QGESLRIAWQYRKYL-ENQK--NAID---DYSNDFDMRKPLERQFLSGRPIDCVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
            LS   D CATFLS+ PRN  NI+S GRIAIQS C+P C++S     +E +MLSF+R LK
Sbjct: 181 DLSIAQDHCATFLSKFPRNSSNIASIGRIAIQSFCSPLCEYSE----KESDMLSFIRLLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SML  SNAVA+VTF PSLL PS SKR QHMADTLLS+KAIPD DKEL  LLTGY+D+ G 
Sbjct: 241 SMLMVSNAVAIVTFPPSLLSPSSSKRLQHMADTLLSIKAIPDGDKELEKLLTGYKDINGF 300

[Close]

BLAST of Carg18491 vs. TrEMBL
Match: tr|A0A0A0KLQ1|A0A0A0KLQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497360 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 2.5e-129
Identity = 252/365 (69.04%), Postives = 268/365 (73.42%), Query Frame = 0


Query: 8   ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC------------- 67
           A TKPRTSSFSRN SSAHSS+TPG KHGPNGTTFISSGIPDLD   C             
Sbjct: 2   AATKPRTSSFSRNFSSAHSSKTPGFKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVME 61

Query: 68  ------------------------IIFISS------------------------------ 127
                                   +++ S                               
Sbjct: 62  DAEAPHHMLLLRNFMSQGLVHDQPLLYASPSRDPRGFLGTLPSPGASKDDKSRDNSTEQE 121

Query: 128 ---KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSL 187
              ++ WQYKKYFG+ QES NAID K EFCNDFDLR+PFDRHFFSGKHVECVSILDSSSL
Sbjct: 122 KGLRIAWQYKKYFGDDQESANAIDSKYEFCNDFDLRRPFDRHFFSGKHVECVSILDSSSL 181

Query: 188 STTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSM 247
           ST  DRCATFLSQVPRNDGNISS GRIAIQSLCAPQCDHSNM    EWEMLSFLRSLKSM
Sbjct: 182 STLRDRCATFLSQVPRNDGNISSGGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLKSM 241

Query: 248 LRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLN 303
           +RSSNAVAVVTF PSLLLPSFSKRWQHMADTLLSV+AIPDEDKELA LLTGYQDMVGLLN
Sbjct: 242 VRSSNAVAVVTFPPSLLLPSFSKRWQHMADTLLSVRAIPDEDKELAKLLTGYQDMVGLLN 301

[Close]

BLAST of Carg18491 vs. TrEMBL
Match: tr|A0A1S3B1C3|A0A1S3B1C3_CUCME (elongator complex protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484919 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 6.7e-127
Identity = 249/365 (68.22%), Postives = 265/365 (72.60%), Query Frame = 0


Query: 8   ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC------------- 67
           A TKPRT SFSRN SSAHSS+TPG KHGPNGTTFISSGIPDLD   C             
Sbjct: 2   AATKPRTGSFSRNFSSAHSSKTPGYKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVME 61

Query: 68  ------------------------IIFISS------------------------------ 127
                                   +++ S                               
Sbjct: 62  DAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGASKDDKSRDNSSEQE 121

Query: 128 ---KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSL 187
              ++ WQYKKYFG+ QES NAID K EFCNDFDLR+PFDRHFFSGKHVECVSILDSSSL
Sbjct: 122 KGLRIAWQYKKYFGDDQESTNAIDSKYEFCNDFDLRRPFDRHFFSGKHVECVSILDSSSL 181

Query: 188 STTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSM 247
           S   DRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLR LKSM
Sbjct: 182 SNFRDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRYLKSM 241

Query: 248 LRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLN 303
           +RSSNAVAVVTF PSLL PSFSKRWQHMADTLLSV+AIPDEDKELA LLTGYQDMVGLLN
Sbjct: 242 VRSSNAVAVVTFPPSLLSPSFSKRWQHMADTLLSVRAIPDEDKELAKLLTGYQDMVGLLN 301

[Close]

BLAST of Carg18491 vs. TrEMBL
Match: tr|A0A1S4DT29|A0A1S4DT29_CUCME (elongator complex protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484919 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.5e-113
Identity = 209/242 (86.36%), Postives = 221/242 (91.32%), Query Frame = 0


Query: 61  KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSLSTT 120
           ++ WQYKKYFG+ QES NAID K EFCNDFDLR+PFDRHFFSGKHVECVSILDSSSLS  
Sbjct: 66  RIAWQYKKYFGDDQESTNAIDSKYEFCNDFDLRRPFDRHFFSGKHVECVSILDSSSLSNF 125

Query: 121 LDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSMLRS 180
            DRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLR LKSM+RS
Sbjct: 126 RDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRYLKSMVRS 185

Query: 181 SNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLNIHK 240
           SNAVAVVTF PSLL PSFSKRWQHMADTLLSV+AIPDEDKELA LLTGYQDMVGLLN+HK
Sbjct: 186 SNAVAVVTFPPSLLSPSFSKRWQHMADTLLSVRAIPDEDKELAKLLTGYQDMVGLLNVHK 245

Query: 241 VAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSXXXCSGSSKTGSL 300
           VAQINTQVP+ILEATTFSIKLQKRR+LVLECLNQAP+D S+GSSYGS   CSGSSKT SL
Sbjct: 246 VAQINTQVPKILEATTFSIKLQKRRYLVLECLNQAPIDVSSGSSYGSTGSCSGSSKTASL 303

Query: 301 DF 303
           +F
Sbjct: 306 EF 303

[Close]

BLAST of Carg18491 vs. TrEMBL
Match: tr|A0A2N9J394|A0A2N9J394_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58801 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.7e-109
Identity = 224/373 (60.05%), Postives = 260/373 (69.71%), Query Frame = 0


Query: 2   INPTMA-ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTF------- 61
           +N  MA AT+KPRTSSFSRNL++  S  TPGLK+GPNGT FISSGIPDLD          
Sbjct: 63  VNNNMAMATSKPRTSSFSRNLTAVPSPSTPGLKYGPNGTIFISSGIPDLDKILGGGFPLG 122

Query: 62  CIIFI-----------------------------------------------SSK----- 121
            ++ +                                               SSK     
Sbjct: 123 SLVMVMEDAEAPHHMLLLRNFMSQGLVHKQPLLYASPSKDPKGFLGTLPTPGSSKDDKSR 182

Query: 122 -----------LFWQYKKYFGESQESVNA-IDGKCEFCNDFDLRKPFDRHFFSGKHVECV 181
                      + WQYKKY GE Q+  ++  D K E+C+DFDLRKP +RHF SG+H++CV
Sbjct: 183 NRDPEHENNLRIAWQYKKYLGEYQQHFDSNRDVKHEYCHDFDLRKPLERHFLSGQHIDCV 242

Query: 182 SILDSSSLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLS 241
           SILD+ +L+   DRCATFL+Q PRNDG ISSAGRIAIQS CAPQC +SNM    EW+MLS
Sbjct: 243 SILDTPTLAALRDRCATFLAQFPRNDGGISSAGRIAIQSFCAPQCKYSNM----EWDMLS 302

Query: 242 FLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGY 301
           F+RSL+SM+RSSNAVAVVTF PSLLLPSFS+RWQHMADTLLSV+AIPDEDKELA LLTGY
Sbjct: 303 FIRSLRSMIRSSNAVAVVTFPPSLLLPSFSRRWQHMADTLLSVRAIPDEDKELAKLLTGY 362

Query: 302 QDMVGLLNIHKVAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSXX 303
           QDMVGLLN+HKVA+INTQVP IL+ATTFSIKLQKRRFLVLECLNQAP+D S+GSSYG+  
Sbjct: 363 QDMVGLLNVHKVARINTQVPVILDATTFSIKLQKRRFLVLECLNQAPIDSSSGSSYGTSA 422

[Close]

BLAST of Carg18491 vs. TrEMBL
Match: tr|A0A2I4DW11|A0A2I4DW11_9ROSI (elongator complex protein 4 isoform X2 OS=Juglans regia OX=51240 GN=LOC108983989 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 7.0e-108
Identity = 215/367 (58.58%), Postives = 255/367 (69.48%), Query Frame = 0


Query: 8   ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTF-------------- 67
           AT+K RTSSFSRNL++  SS TPGLK+GPNGT FISSGIPDLD                 
Sbjct: 2   ATSKSRTSSFSRNLTAVPSSNTPGLKYGPNGTIFISSGIPDLDKILGGGFALGSLVMVME 61

Query: 68  -----------------------CIIFISS------------------------------ 127
                                   +++ S                               
Sbjct: 62  DAEAPHHMLLLRNFMSQGLVHKQPLLYASPSKDPKGFLGTLPSPRPCKDDKDKSRDHDPE 121

Query: 128 ----KLFWQYKKYFGESQESV-NAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 187
               ++ WQYKKYF E Q++  N  DGK E+CNDFDLRKP +RHF +G+H++CVSIL +S
Sbjct: 122 QEGLRIAWQYKKYFAEHQQTFDNTRDGKHEYCNDFDLRKPLERHFLTGQHIDCVSILHNS 181

Query: 188 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 247
            L    DRCATF++Q PRNDG+I+SAGRIAIQS CAPQC++SN+    EW+MLS +RSL+
Sbjct: 182 DLVALRDRCATFITQFPRNDGSIASAGRIAIQSFCAPQCEYSNV----EWDMLSLIRSLR 241

Query: 248 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SM+RSSNAVAVVTF PSLLLPS SKRWQHMADTLLSV+AIPDEDKELANLLTGYQDMVGL
Sbjct: 242 SMIRSSNAVAVVTFPPSLLLPSVSKRWQHMADTLLSVRAIPDEDKELANLLTGYQDMVGL 301

The following BLAST results are available for this feature:

BLAST of Carg18491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963340.1	1.1e-141	76.57	elongator complex protein 4 isoform X2 [Cucurbita moschata]	[more]
XP_022963337.1	2.0e-138	73.18	elongator complex protein 4 isoform X1 [Cucurbita moschata] >XP_022963338.1 elon...	[more]
XP_023003256.1	3.4e-138	74.93	elongator complex protein 4 [Cucurbita maxima] >XP_023003257.1 elongator complex...	[more]
XP_004143437.1	3.7e-129	69.04	PREDICTED: elongator complex protein 4 isoform X1 [Cucumis sativus] >KGN48686.1 ...	[more]
XP_023518134.1	5.4e-128	74.41	elongator complex protein 4, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18491 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11220.2	3.2e-82	48.83	Paxneb protein-related	[more]

BLAST of Carg18491 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C778\|ELP4_ARATH	8.6e-85	51.50	Elongator complex protein 4 OS=Arabidopsis thaliana OX=3702 GN=ELP4 PE=1 SV=1	[more]

BLAST of Carg18491 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLQ1\|A0A0A0KLQ1_CUCSA	2.5e-129	69.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497360 PE=4 SV=1	[more]
tr\|A0A1S3B1C3\|A0A1S3B1C3_CUCME	6.7e-127	68.22	elongator complex protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484919 P...	[more]
tr\|A0A1S4DT29\|A0A1S4DT29_CUCME	1.5e-113	86.36	elongator complex protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484919 P...	[more]
tr\|A0A2N9J394\|A0A2N9J394_FAGSY	1.7e-109	60.05	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58801 PE=4 SV=1	[more]
tr\|A0A2I4DW11\|A0A2I4DW11_9ROSI	7.0e-108	58.58	elongator complex protein 4 isoform X2 OS=Juglans regia OX=51240 GN=LOC108983989...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0033588	Elongator holoenzyme complex

Vocabulary: **Biological Process**
Term	Definition
GO:0002098	tRNA wobble uridine modification

Vocabulary: **INTERPRO**
Term	Definition
IPR008728	Elongator_complex_protein_4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0033588	Elongator holoenzyme complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18491-RA	Carg18491-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008728	Elongator complex protein 4	PFAM	PF05625	PAXNEB	coord: 63..302 e-value: 8.2E-44 score: 150.1
IPR008728	Elongator complex protein 4	PANTHER	PTHR12896	PAX6 NEIGHBOR PROTEIN PAXNEB	coord: 64..297
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 24..283 e-value: 9.1E-40 score: 138.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..302

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18491	Cla014093	Watermelon (97103) v1	carwmB0005
Carg18491	Csa6G497360	Cucumber (Chinese Long) v2	carcuB0003
Carg18491	MELO3C007703	Melon (DHL92) v3.5.1	carmeB0002
Carg18491	ClCG01G018260	Watermelon (Charleston Gray)	carwcgB0002
Carg18491	CSPI06G29630	Wild cucumber (PI 183967)	carcpiB0003
Carg18491	Cucsa.103850	Cucumber (Gy14) v1	carcgyB0001
Carg18491	CmaCh07G005820	Cucurbita maxima (Rimu)	carcmaB0004
Carg18491	CmoCh07G005870	Cucurbita moschata (Rifu)	carcmoB0005
Carg18491	Lsi01G008230	Bottle gourd (USVL1VR-Ls)	carlsiB001
Carg18491	Cp4.1LG19g10000	Cucurbita pepo (Zucchini)	carcpeB0002
Carg18491	CsGy6G029140	Cucumber (Gy14) v2	carcgybB0003
Carg18491	MELO3C007703.2	Melon (DHL92) v3.6.1	carmedB0003
Carg18491	CsaV3_6G044840	Cucumber (Chinese Long) v3	carcucB0003
Carg18491	Cla97C01G017530	Watermelon (97103) v2	carwmbB0002
Carg18491	Bhi03G001328	Wax gourd	carwgoB0002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18491	Silver-seed gourd	carcarB001
Carg18491	Cucurbita maxima (Rimu)	carcmaB0003
Carg18491	Cucurbita moschata (Rifu)	carcmoB0004
Carg18491	Cucurbita pepo (Zucchini)	carcpeB0001
Carg18491	Wax gourd	carwgoB0004