Carg18232 (gene) Silver-seed gourd

NameCarg18232
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_120 : 111949 .. 112600 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCAAACAAACGGCAAGGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGGGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAATGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAGTAAATTTCACATTGCATTGAATCGTGTTTTTATTGTTTGTTTGTTTGTTTGTTTAGTATGTTGATTAATGTGTTTGTGTTATCAGAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAAAGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTC

mRNA sequence

ATGGAAGATCAAACAAACGGCAAGGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGGGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAATGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAAAGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTC

Coding sequence (CDS)

ATGGAAGATCAAACAAACGGCAAGGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGGGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAATGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAAAGGGCTGCAAACGCGGTGGTTGGTGA

Protein sequence

MEDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMREERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW
BLAST of Carg18232 vs. NCBI nr
Match: XP_022962296.1 (uncharacterized protein LOC111462789 [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 4.0e-88
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0

Query: 1   MEDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNG EIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR
Sbjct: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 172
           EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 171

BLAST of Carg18232 vs. NCBI nr
Match: XP_023546181.1 (uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.2 bits (835), Expect = 6.4e-86
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0

Query: 1   MEDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNG EIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDS TTHLPKTKSKWRVKSETAAVRR+PS+RGLRQGRYERVGM R
Sbjct: 61  DRRAELLAYSRELRNVDSGTTHLPKTKSKWRVKSETAAVRRIPSKRGLRQGRYERVGMTR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 172
           EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLSKGCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171

BLAST of Carg18232 vs. NCBI nr
Match: XP_022990178.1 (uncharacterized protein LOC111487148 [Cucurbita maxima])

HSP 1 Score: 324.3 bits (830), Expect = 2.4e-85
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 0

Query: 1   MEDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNG EIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNA PKA KSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAPPKATKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRR+PSRRGLRQGRYERVGMMR
Sbjct: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRIPSRRGLRQGRYERVGMMR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 172
           EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLSKGCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171

BLAST of Carg18232 vs. NCBI nr
Match: XP_008460454.1 (PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 99/177 (55.93%), Postives = 120/177 (67.80%), Query Frame = 0

Query: 2   EDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNP-ISINKNSHPN---AHPKAPKS 61
           E Q++    + +P K+ VIITVYVESP+ Q++ SH+   I  N N+H N   + PK P S
Sbjct: 42  EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNS 101

Query: 62  RGYDRRAELLAYSRELRNVDSATTH---LPKTKSKWRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T             V+SE   VRR+PSRR L++ RYE
Sbjct: 102 TGYDRRAQLLAYSRHLRNVHSSNTQSXXXXXXXXXXXVRSEAPTVRRMPSRRALQRWRYE 161

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSKGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LSKGCKR G
Sbjct: 162 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 218

BLAST of Carg18232 vs. NCBI nr
Match: XP_004140323.1 (PREDICTED: uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical protein Csa_5G385350 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 7.5e-34
Identity = 95/177 (53.67%), Postives = 113/177 (63.84%), Query Frame = 0

Query: 2   EDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
           E Q++    + +P K+ VIITVYVESP+ Q++  H+ PI   N        P   K P S
Sbjct: 5   EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNXXXXXXXKPSLRKTPNS 64

Query: 62  RGYDRRAELLAYSRELRNVDSATT---HLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T               SE   VRR+PSRR L++ RYE
Sbjct: 65  TGYDRRAQLLAYSRHLRNVHSSNTXXXXXXXXXXXXXXXSEAPTVRRMPSRRALQRWRYE 124

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSKGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LSKGCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181

BLAST of Carg18232 vs. TrEMBL
Match: tr|A0A1S3CDS3|A0A1S3CDS3_CUCME (uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 99/177 (55.93%), Postives = 120/177 (67.80%), Query Frame = 0

Query: 2   EDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNP-ISINKNSHPN---AHPKAPKS 61
           E Q++    + +P K+ VIITVYVESP+ Q++ SH+   I  N N+H N   + PK P S
Sbjct: 42  EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNS 101

Query: 62  RGYDRRAELLAYSRELRNVDSATTH---LPKTKSKWRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T             V+SE   VRR+PSRR L++ RYE
Sbjct: 102 TGYDRRAQLLAYSRHLRNVHSSNTQSXXXXXXXXXXXVRSEAPTVRRMPSRRALQRWRYE 161

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSKGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LSKGCKR G
Sbjct: 162 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 218

BLAST of Carg18232 vs. TrEMBL
Match: tr|A0A0A0KN34|A0A0A0KN34_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.9e-34
Identity = 95/177 (53.67%), Postives = 113/177 (63.84%), Query Frame = 0

Query: 2   EDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
           E Q++    + +P K+ VIITVYVESP+ Q++  H+ PI   N        P   K P S
Sbjct: 5   EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNXXXXXXXKPSLRKTPNS 64

Query: 62  RGYDRRAELLAYSRELRNVDSATT---HLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T               SE   VRR+PSRR L++ RYE
Sbjct: 65  TGYDRRAQLLAYSRHLRNVHSSNTXXXXXXXXXXXXXXXSEAPTVRRMPSRRALQRWRYE 124

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSKGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LSKGCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181

BLAST of Carg18232 vs. TrEMBL
Match: tr|B9RJB0|B9RJB0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1032810 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 69/194 (35.57%), Postives = 90/194 (46.39%), Query Frame = 0

Query: 1   MEDQTNGKEIKAI-----PPKERVIITVYVESPRKQ-------SNKSHQNPISINKNSHP 60
           M  Q  GK++K       P   RVIITVYVESP K+       +NK+  NP+        
Sbjct: 1   MRKQEPGKDVKDTNSTTGPNTNRVIITVYVESPGKRLHQKIDLTNKATTNPLL------- 60

Query: 61  NAHPKAPKSRGYDRRAELLAYSRELRN------VDSATTHLPKTKSKWRVKSETAAVR-- 120
              P+   + GY+RRAELLAYSRELRN         A    P+    W+  S    +R  
Sbjct: 61  -KRPQFTSTEGYNRRAELLAYSRELRNGGPHQTWQRARNSRPEESKMWKWSSIPVRIRAS 120

Query: 121 -RLPSRRGLRQGRYERVGMMREERTEVVEQRCLPKCFNGDYKRSSGR--LGSSILRKLKS 170
            R   RR  R  RYER+   R E+     Q      F+   KR+  R    +S  RKLK 
Sbjct: 121 LRRMFRRNRRIFRYERI---RSEKYSEAGQ------FSRRQKRAPRRYITAASYCRKLKH 177

BLAST of Carg18232 vs. TrEMBL
Match: tr|A0A199UAS0|A0A199UAS0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S076900 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 68/176 (38.64%), Postives = 88/176 (50.00%), Query Frame = 0

Query: 8   KEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSR---GYDRRA 67
           K  +A     RVIITV VESPRK    +HQ    +   +  N   K P+SR   GYDRRA
Sbjct: 13  KIARARTNSNRVIITVCVESPRK---CTHQKTGDLTSEATRNPLFKRPQSRRKKGYDRRA 72

Query: 68  ELLAYSRELRNVDSA----------TTHLPKTKSKW-----RVKSETAAVRRLPSRRGLR 127
           ELLAYSRELR+  S           ++ L   K KW     R+K   A+++R+  RR  R
Sbjct: 73  ELLAYSRELRDGVSLRQQERRPRRNSSRLKAEKLKWSSAPVRIK---ASIQRI-FRRNER 132

Query: 128 QGRYERVGMMREERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKG 166
           Q  YE++  + EE + V  Q    K      K S G + SS  +KLK  +  LS G
Sbjct: 133 QCMYEKIESVSEENSGVASQFHCRK-----EKASGGNIASSFCKKLKRKLKELSCG 176

BLAST of Carg18232 vs. TrEMBL
Match: tr|A0A2P4KRM4|A0A2P4KRM4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_32743 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.8e-07
Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = 0

Query: 19  VIITVYVESP-------------RKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAE 78
           VII+VYVESP             +K +NK   +  S++K    +A     + +G+DRRA+
Sbjct: 8   VIISVYVESPKIRSPQRTRTVAIKKSTNKPKSSSSSVSKEPQISA-----RKKGFDRRAQ 67

Query: 79  LLAYSRELRNVDSATTHLPKTK-----SKWR---VKSETAAVRRLPSRRGLRQGRYERVG 138
           LLAY+RELR+  S     P+        KW+   +        R    R   + RYER+ 
Sbjct: 68  LLAYARELRDAGSQEAQKPRKNLRPKLKKWKWLTIPMSLCFPSRWILERTSSRWRYERI- 127

Query: 139 MMREERTE-VVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKGCK 168
              E  TE +V+  C  KC  G  +R++ R+ S    KL+ ++  LS  CK
Sbjct: 128 -PTEVYTENIVDSSCGSKCIGGKKRRATKRIKSHFFSKLRCMLKELSCSCK 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022962296.14.0e-8898.83uncharacterized protein LOC111462789 [Cucurbita moschata][more]
XP_023546181.16.4e-8696.49uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo][more]
XP_022990178.12.4e-8597.08uncharacterized protein LOC111487148 [Cucurbita maxima][more]
XP_008460454.12.5e-3755.93PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo][more]
XP_004140323.17.5e-3453.67PREDICTED: uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hy... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CDS3|A0A1S3CDS3_CUCME1.6e-3755.93uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=... [more]
tr|A0A0A0KN34|A0A0A0KN34_CUCSA4.9e-3453.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1[more]
tr|B9RJB0|B9RJB0_RICCO3.9e-0735.57Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1032810 PE=4 SV=1[more]
tr|A0A199UAS0|A0A199UAS0_MANES3.9e-0738.64Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S076900 PE=4 SV=1[more]
tr|A0A2P4KRM4|A0A2P4KRM4_QUESU8.8e-0732.16Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_32743 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18232-RACarg18232-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..50