Cla002786 (gene) Watermelon (97103) v1

Overview
NameCla002786
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 10763145 .. 10763410 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGCCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTGTAAAATTCTAATTGCATTCAATATGATTCTATATGAATACCCATTTGAACCTTTTTAATTACATATTCTTTGTTAGTATGGTGATTAATGTGTGTTCTGTTTTCAGAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG

mRNA sequence

ATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGCCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG

Coding sequence (CDS)

ATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGCCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG

Protein sequence

MMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCKH
Homology
[Close]
BLAST of Cla002786 vs. TrEMBL
Match: A0A0A0KN34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G385350 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.0e-18
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 1   MMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 52
           MMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 128 MMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 178

[Close]
BLAST of Cla002786 vs. NCBI nr
Match: gi|659121000|ref|XP_008460454.1| (PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 1   MMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 52
           MMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 165 MMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 215

[Close]
BLAST of Cla002786 vs. NCBI nr
Match: gi|449445124|ref|XP_004140323.1| (PREDICTED: uncharacterized protein LOC101218772 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 1   MMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 52
           MMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 128 MMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 178

The following BLAST results are available for this feature:
BLAST of Cla002786 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN34_CUCSA9.0e-1890.20Uncharacterized protein OS=Cucumis sativus GN=Csa_5G385350 PE=4 SV=1[more]
BLAST of Cla002786 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121000|ref|XP_008460454.1|1.3e-1790.20PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo][more]
gi|449445124|ref|XP_004140323.1|1.3e-1790.20PREDICTED: uncharacterized protein LOC101218772 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002786Cla002786.1mRNA