CmoCh04G024400 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G024400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 18086516 .. 18087319 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTTTTTTTTTTTTTTTTCTTAGGTTCAATCCAACTCCCCGGAAAGAGACCATAATCCCTCCGGCAAGAAATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAGTAAATTTCACATTGCATTGAATCGTGTTTTTATTGTTTGTTTGTTTGTTTAGTATGTTGATTAATGTGTTTGTGTTATCAGAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTCGTGGGTATCCATTGGGCTCTGAATTAGCAGCGAAATTAAGTCATCTCTGTCTGTTTCAACTCTCCTTTAGTGGTTATGTTGCCT

mRNA sequence

TCTGTTTTTTTTTTTTTTTTCTTAGGTTCAATCCAACTCCCCGGAAAGAGACCATAATCCCTCCGGCAAGAAATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTCGTGGGTATCCATTGGGCTCTGAATTAGCAGCGAAATTAAGTCATCTCTGTCTGTTTCAACTCTCCTTTAGTGGTTATGTTGCCT

Coding sequence (CDS)

ATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGA
BLAST of CmoCh04G024400 vs. TrEMBL
Match: A0A0A0KN34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G385350 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.0e-43
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 1

Query: 2   EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
           E Q++ N  + +P K+ VIITVYVESP+ Q++  H+ PI   N N++ N  P   K P S
Sbjct: 5   EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNS 64

Query: 62  RGYDRRAELLAYSRELRNVDSATTHLPKTKSK---WRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T  PK KSK   W+V+SE   VRR+PSRR L++ RYE
Sbjct: 65  TGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 124

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181

BLAST of CmoCh04G024400 vs. TrEMBL
Match: B9RJB0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1032810 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 68/194 (35.05%), Postives = 89/194 (45.88%), Query Frame = 1

Query: 1   MEDQTNGNEIKAI-----PPKERVIITVYVESPRKQ-------SNKSHQNPISINKNSHP 60
           M  Q  G ++K       P   RVIITVYVESP K+       +NK+  NP+        
Sbjct: 1   MRKQEPGKDVKDTNSTTGPNTNRVIITVYVESPGKRLHQKIDLTNKATTNPLL------- 60

Query: 61  NAHPKAPKSRGYDRRAELLAYSRELRN------VDSATTHLPKTKSKWRVKSETAAVR-- 120
              P+   + GY+RRAELLAYSRELRN         A    P+    W+  S    +R  
Sbjct: 61  -KRPQFTSTEGYNRRAELLAYSRELRNGGPHQTWQRARNSRPEESKMWKWSSIPVRIRAS 120

Query: 121 -RLPSRRGLRQGRYERVGMMREERTEVVEQRCLPKCFNGDYKRSSGR--LGSSILRKLKS 170
            R   RR  R  RYER+   R E+     Q      F+   KR+  R    +S  RKLK 
Sbjct: 121 LRRMFRRNRRIFRYERI---RSEKYSEAGQ------FSRRQKRAPRRYITAASYCRKLKH 177

BLAST of CmoCh04G024400 vs. TrEMBL
Match: A0A061FNV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035018 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 55/162 (33.95%), Postives = 74/162 (45.68%), Query Frame = 1

Query: 3   DQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPK-SRGYD 62
           DQ      K +P    V+IT YVESP      S  NP   NK   PN   + PK S+GYD
Sbjct: 9   DQKKKKSAKEMPNTNGVVITTYVESPSIIRPLSESNP---NKKIQPNPDSRNPKRSQGYD 68

Query: 63  RRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMRE 122
           RRA+LLAY++ELR  D+    L   +   R KS+       P + G+   R       R 
Sbjct: 69  RRAQLLAYTQELRAADNGDQLLRWGEKSCRHKSKNWKCPTTPRKLGISFLRIFGKAKRRC 128

Query: 123 ERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLS 164
           +   +  +   P+  +G  K+   R      RKLK +  GLS
Sbjct: 129 KYQRMAYEEDKPRNTSGKKKKHGRR---KFWRKLKRMFKGLS 164

BLAST of CmoCh04G024400 vs. NCBI nr
Match: gi|449445124|ref|XP_004140323.1| (PREDICTED: uncharacterized protein LOC101218772 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-42
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 1

Query: 2   EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
           E Q++ N  + +P K+ VIITVYVESP+ Q++  H+ PI   N N++ N  P   K P S
Sbjct: 5   EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNS 64

Query: 62  RGYDRRAELLAYSRELRNVDSATTHLPKTKSK---WRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T  PK KSK   W+V+SE   VRR+PSRR L++ RYE
Sbjct: 65  TGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 124

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181

BLAST of CmoCh04G024400 vs. NCBI nr
Match: gi|659121000|ref|XP_008460454.1| (PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 1

Query: 2   EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
           E Q++ N  + +P K+ VIITVYVESP+ Q++ SH+  I   N N+H N  P   K P S
Sbjct: 42  EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNS 101

Query: 62  RGYDRRAELLAYSRELRNVDSATTHLPKTKSK---WRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T  P+ KSK   W+V+SE   VRR+PSRR L++ RYE
Sbjct: 102 TGYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 161

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 162 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 218

BLAST of CmoCh04G024400 vs. NCBI nr
Match: gi|694382639|ref|XP_009367315.1| (PREDICTED: uncharacterized protein LOC103956984 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-08
Identity = 61/179 (34.08%), Postives = 90/179 (50.28%), Query Frame = 1

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPK---APKS 60
           +E +   N  +  P K+ VIITVYVE P   S+ SHQ P  + K +   +  K     K+
Sbjct: 6   LEKEEKNNGTRERPNKKEVIITVYVELPA--SSDSHQKPGPVKKINPKRSSEKPHQTAKT 65

Query: 61  RGYDRRAELLAYSRELRNVDSA-----TTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGR 120
           R YDRRA+LLAYS+ELR    A     T +  K K +   K     +R    +R   +GR
Sbjct: 66  RIYDRRAQLLAYSQELRTTGDAQKVQWTNNGSKPKPRVGNKRFITPIRH---KRTKSRGR 125

Query: 121 YERVGMMREERTEVVEQRCLPKCFNGDYKRSSG-RLGSSILRKLKSLMGGLS-MGCKRG 170
           Y+R+          V+  C PK   G  K++ G    S+ LRK++ ++ G+S + C +G
Sbjct: 126 YQRL-------VPEVDVYCNPKSIIGRNKKAVGSETSSNFLRKIRCVLRGISGLRCNKG 172

BLAST of CmoCh04G024400 vs. NCBI nr
Match: gi|694382637|ref|XP_009367314.1| (PREDICTED: uncharacterized protein LOC103956984 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 58/176 (32.95%), Postives = 89/176 (50.57%), Query Frame = 1

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPK---APKS 60
           +E +   N  +  P K+ VIITVYVE P   S+ SHQ P  + K +   +  K     K+
Sbjct: 6   LEKEEKNNGTRERPNKKEVIITVYVELPA--SSDSHQKPGPVKKINPKRSSEKPHQTAKT 65

Query: 61  RGYDRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVG 120
           R YDRRA+LLAYS+ELR    A       K +W         R++ ++R +   R++R  
Sbjct: 66  RIYDRRAQLLAYSQELRTTGDA------QKVQWTNNGSKPKPRQVGNKRFITPIRHKRTK 125

Query: 121 MMREERTEV--VEQRCLPKCFNGDYKRSSG-RLGSSILRKLKSLMGGLS-MGCKRG 170
                +  V  V+  C PK   G  K++ G    S+ LRK++ ++ G+S + C +G
Sbjct: 126 SRGRYQRLVPEVDVYCNPKSIIGRNKKAVGSETSSNFLRKIRCVLRGISGLRCNKG 173

BLAST of CmoCh04G024400 vs. NCBI nr
Match: gi|255545538|ref|XP_002513829.1| (PREDICTED: uncharacterized protein LOC8274142 [Ricinus communis])

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-07
Identity = 68/194 (35.05%), Postives = 89/194 (45.88%), Query Frame = 1

Query: 1   MEDQTNGNEIKAI-----PPKERVIITVYVESPRKQ-------SNKSHQNPISINKNSHP 60
           M  Q  G ++K       P   RVIITVYVESP K+       +NK+  NP+        
Sbjct: 1   MRKQEPGKDVKDTNSTTGPNTNRVIITVYVESPGKRLHQKIDLTNKATTNPLL------- 60

Query: 61  NAHPKAPKSRGYDRRAELLAYSRELRN------VDSATTHLPKTKSKWRVKSETAAVR-- 120
              P+   + GY+RRAELLAYSRELRN         A    P+    W+  S    +R  
Sbjct: 61  -KRPQFTSTEGYNRRAELLAYSRELRNGGPHQTWQRARNSRPEESKMWKWSSIPVRIRAS 120

Query: 121 -RLPSRRGLRQGRYERVGMMREERTEVVEQRCLPKCFNGDYKRSSGR--LGSSILRKLKS 170
            R   RR  R  RYER+   R E+     Q      F+   KR+  R    +S  RKLK 
Sbjct: 121 LRRMFRRNRRIFRYERI---RSEKYSEAGQ------FSRRQKRAPRRYITAASYCRKLKH 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KN34_CUCSA7.0e-4358.76Uncharacterized protein OS=Cucumis sativus GN=Csa_5G385350 PE=4 SV=1[more]
B9RJB0_RICCO3.6e-0735.05Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1032810 PE=4 SV=1[more]
A0A061FNV8_THECC4.0e-0633.95Uncharacterized protein OS=Theobroma cacao GN=TCM_035018 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449445124|ref|XP_004140323.1|1.0e-4258.76PREDICTED: uncharacterized protein LOC101218772 [Cucumis sativus][more]
gi|659121000|ref|XP_008460454.1|1.7e-4258.76PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo][more]
gi|694382639|ref|XP_009367315.1|8.1e-0834.08PREDICTED: uncharacterized protein LOC103956984 isoform X2 [Pyrus x bretschneide... [more]
gi|694382637|ref|XP_009367314.1|1.1e-0732.95PREDICTED: uncharacterized protein LOC103956984 isoform X1 [Pyrus x bretschneide... [more]
gi|255545538|ref|XP_002513829.1|5.2e-0735.05PREDICTED: uncharacterized protein LOC8274142 [Ricinus communis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G024400.1CmoCh04G024400.1mRNA


The following gene(s) are paralogous to this gene:

None