Carg18007 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18007
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Somatic embryogenesis receptor kinase 1-like protein
Location	Cucurbita_argyrosperma_scaffold_171 : 350567 .. 353930 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGACTCGGTTCTGGACTTCTTCCTTCTTCTTTCTCCTTTTCGTAGCCCTAACTTCCGTTCTGCAGGTTGCTTTTGCCAACTCCGAAGGCGACGCTCTCTATACTCTCCGTCGGAGCTTGACCGATCCTGATAACGTGCTTCAGAGTTGGGATCCTACTCTCGTCAACCCCTGTACTTGGTTCCACATCACTTGTAACCAGGACAACCGCGTTACCCGAGTGTACGGTTTCTGTTTCTTTGTTTCTTTTTACTATTTGATTAGTTTTTCAACTGTTTTCTTTTATCTGATCTTTATTTAGAATCCTGGAATTTTCCGTTACGCTTTTCGTTGATTTTTTACTGTCTTCGTATCTTTTTGTGTTGTGCGGTTTCGTTCTTGTATTATTTTCTGTTTTGGACGAGGATTCAATTGATCGTTTTGCGAAATTTGTTGTTCGTTGTATTTAATTATTGTCGGATGGGGGCTGTCTGTCTTGTCTGTGAAGTGAAACGATTTCTACTGCTTTAAGATGGACGATAGTCTTTTGAGGAAAGTGAAATCCAACACTGTGGTGTTAGAGTTTTGTTCAGGACATATCTCTTTACTTGTCTAAAAGCTTGTGTACTTTTGGCTTGTTGTTGGCGCTGGCCGCTGATCAGAAGTCCGATTTTATTTTGCAGGGACTTGGGCAATTCCAATCTGTCTGGACATCTGGTTCCTGAACTAGGAAGGCTCGAGCACCTGCAATATCTGTATGTTGTTTAATCTTAATGTTTCCTTCTTCGTGGTGCTACTAATTGTAGCTTCACCTATGTTCTTTGATTGATATGATTTGTCAATAGTTCTATAGGGTTATTTAAGTTATTTCTTGAAATAGTTTCTTGAAAGAGAATTATTTTTTGGGGTCTTGTTTCTACCTTATGGAAGTACTTCCAAAATCCATGAAAAACTAGTAGGATTTGAAATGGCAGTTTCATCAACTAGCAGATAGAATTCAAGGACTACAATACCACTGAGGAGAATTGGACAGCTTCTTTCCCACAAACAACTTCCAAATCCTACTAGCTCTTATACTTGCCTAAAACAGTTTACCCCCAACCCTACCCCAATACAGTACAAAGTTCAGTTGAATGGGCCCCGTGCTTACATCTCTTCTAGCCATTTTCCAATTTGTACCCCCATAATTCCATTGCTACCCTTTTCTTGTAACACCGAGTAGTAAGTAGTCTATCTAAGGAGAGGTCTATCACAAATTAACCCTAGAACTTGTATTTGTCTGTTCCTCACTTTCTTGATTACTTCTGATGTAAATCTCCTGTGATGTGTTAATCATTTATGTGAGCATGGGTTTAGTACTTTAATCTGGTTTTGTTCTGATTGTTGATTTTTTTGTACTCTCTGGCTACTAAATGTGTAGGGAACTTTACAAAAACAACATTCATGGAACTATCCCAGATGAGCTTGGAAACCTGAAGAGCCTCATCAGTTTGGACTTGTATAACAACAACATCACTGGAAGGATTCCAATTTCATTGGGGAAATTGAAATCTCTTGTGTTCTTGTGAGTTTCATTTTATGTTGCTCATCCTTGTTTAGCTTGGTTGTGTTGTATTAAGGGTTTTTATTTTCTTTCTATCTCCAATTTTTATTGACCAACAGTATTGATAATTGATGGTATGATCATAATTTTATAAGAAGTTATTGCTTGTGAACATTTGATTTTTTATAATCCACTTAACATTGTTCTAATGAACAACTTCCTTTAATCCATGTTTTAGGAACAGAATTTTTAAAACATTCTGATGAATTTCTTTTCTAGTGGCCCTTTCTTTTCCTAATATTTTTTTCCTGTACTTTTATTCTTTTTTGCAGACGGCTTAATGACAACCGATTAAATGGACCAATTCCAAGAGAACTTACTGGAATTACGAGCCTTAAAGTGGTGTAAGTCTTTGTATAATTTTTTCCTTTTTCCATTTCTTTTTTGGGTAAGAAACTGCGCTTAGAGATATGGAAAAAATGTTCAAGGGCATAAAATAAACAAGCCCACAAAAGGAACCCTTGCTTTGATGGATCACTCTTTAAATTTTGCGCTACGTCATGCAATCGTTTAATGATGGATTATGTCTCCTTTGTTTCAGAGATGTCTCAAATAATGACTTGTGTGGAACAATACCAACCAGTGGACCATTTGAGCACATACCTTTAAACAAGTAGGCTTCTGTATTTCTTTCTTACTCATTCCATAGTTCGTTCCTCCCTGTTTTTATTCTATTACTATTCCATATTTGAATTGCATCGAAGATTGCGGAGTAACACTCCTGCAAACATGAACCAACAGGGAAAATGAGGAGAGAATGAACAGTACTTTTATGATGTGTTTTTATCATATGCCGTGGAATTAATCCCCCTTGTTGCTGTGTTTAGATCAAAGTTAGGGTCTGAAATTGATGTATCTAGAAGAGATATATTGTTACTCTTATCATGTGTTTTTAGTTTTAAATTCCCTTGTATTGCTGTGCTTAGGCGCTGAAATTAATGTATCTAGAAGAGATACATTATTATTAGGCCCCGTTTCATAACCTTTGAGATGCCTGAACTCCATAGTAGAAAAAGCGTTCCCACCATCTTATTAAACCATCTCTTTAACTAATCACTATCCTCCTTCCCGGCACACTCCTAACCACACAATAGATGACTAGGAGCCACTGCTCTTATTACTCATCTACCCTTCCCTCGCACAAATCATTATTCTGGTTCAGATCCTCTAGTTGACTTCTGAGCTTCTCAATTGGTTGGCTGGCGTAAATCTCACTATTGGGCATTGGGCCTACAACTTGTAATGATTGGAAGTCATCTCAGAGTTGGGCCTACAACTTGTAGGCTGGGAAATTAAGAGTTAAATAATCAGAACGAGTACATGTGCACATTGTCTGCCCACTGTAGCTTTGTTCGTATTACCGTTCACGTTTATTTTGTTTGGTGCAGCTTTGAGAATAACCCTAGAATGGAAGGACCAGAATTGTTGGGACTTGCTAGCTATGACACAAATTGCACATAGAAGAAGGGTAAGGTGATGCTACAAAATTACAGCTTCAGAATGAGATAGTAAAAGTGTTATTTTCACTCTCTAGTGAACTGGGGATTATATTACTAAATCCAAAATTACAAATTAGTGTTTGTAAAGTGTAACGCCAAATGATTCGGTATTTGTATTGTAACTCGTGTATTTTTCTTCTGCCACGACATTGAATTTGTGCTAATGTAATTCTACCAACTAGTCTCTACTTGTTTATTCATTTTGCTATCTGTTCAGTAAAGACAGCAGGAATTTATCTTATTTTGGTTTCTCTTTTCTTAGTAATTTTCGTTTTTGA

mRNA sequence

ATGGCGGCGACTCGGGACTTGGGCAATTCCAATCTGTCTGGACATCTGGTTCCTGAACTAGGAAGGCTCGAGCACCTGCAATATCTGGAACTTTACAAAAACAACATTCATGGAACTATCCCAGATGAGCTTGGAAACCTGAAGAGCCTCATCAGTTTGGACTTGTATAACAACAACATCACTGGAAGGATTCCAATTTCATTGGGGAAATTGAAATCTCTTGTGTTCTTCTTTGAGAATAACCCTAGAATGGAAGGACCAGAATTGTTGGGACTTGCTAGCTATGACACAAATTGCACATAGAAGAAGGGTAAGGTGATGCTACAAAATTACAGCTTCAGAATGAGATAGTAAAAGTGTTATTTTCACTCTCTAGTGAACTGGGGATTATATTACTAAATCCAAAATTACAAATTAGTGTTTGTAAAGTGTAACGCCAAATGATTCGGTATTTGTATTGTAACTCGTGTATTTTTCTTCTGCCACGACATTGAATTTGTGCTAATGTAATTCTACCAACTAGTCTCTACTTGTTTATTCATTTTGCTATCTGTTCAGTAAAGACAGCAGGAATTTATCTTATTTTGGTTTCTCTTTTCTTAGTAATTTTCGTTTTTGA

Coding sequence (CDS)

ATGGCGGCGACTCGGGACTTGGGCAATTCCAATCTGTCTGGACATCTGGTTCCTGAACTAGGAAGGCTCGAGCACCTGCAATATCTGGAACTTTACAAAAACAACATTCATGGAACTATCCCAGATGAGCTTGGAAACCTGAAGAGCCTCATCAGTTTGGACTTGTATAACAACAACATCACTGGAAGGATTCCAATTTCATTGGGGAAATTGAAATCTCTTGTGTTCTTCTTTGAGAATAACCCTAGAATGGAAGGACCAGAATTGTTGGGACTTGCTAGCTATGACACAAATTGCACATAG

Protein sequence

MAATRDLGNSNLSGHLVPELGRLEHLQYLELYKNNIHGTIPDELGNLKSLISLDLYNNNITGRIPISLGKLKSLVFFFENNPRMEGPELLGLASYDTNCT

Homology

[Close]

BLAST of Carg18007 vs. NCBI nr
Match: RCV23863.1 (hypothetical protein SETIT_5G039000v2 [Setaria italica])

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 38/94 (40.43%), Postives = 39/94 (41.49%), Query Frame = 0


Query: 6   DLGNSNLSGHLVPELGRLEHLQYLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65
           DLGNSNLSG LVPELG LEHLQYL                                    
Sbjct: 78  DLGNSNLSGSLVPELGHLEHLQYLR------------------------LNDNHLTGPVP 137

Query: 66  XXXXXXXXXXXXXXXXPRMEGPELLGLASYDTNC 100
                           PRMEGPEL GLA+YDTNC
Sbjct: 138 RELTKISSLKVIFDNNPRMEGPELQGLATYDTNC 147

[Close]

BLAST of Carg18007 vs. NCBI nr
Match: PIA53302.1 (hypothetical protein AQUCO_00900109v1 [Aquilegia coerulea])

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 6   DLGNSNLSGHLVPELGRLEHLQYLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65
           DLGNSNLSGHLV ELG+LE LQY                                     
Sbjct: 83  DLGNSNLSGHLVSELGKLERLQYF------------------------------------ 129

Query: 66  XXXXXXXXXXXXXXXXPRMEGPELLGLASYDTNCT 101
                           PR+EGPELLGLA+YDTNC+
Sbjct: 143 ------------FENNPRLEGPELLGLATYDTNCS 129

[Close]

BLAST of Carg18007 vs. NCBI nr
Match: PNT70359.1 (hypothetical protein BRADI_2g10816v3 [Brachypodium distachyon])

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 36/94 (38.30%), Postives = 38/94 (40.43%), Query Frame = 0


Query: 6   DLGNSNLSGHLVPELGRLEHLQYLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65
           DLGNSNLSGHLVPELG LEHLQYL                                    
Sbjct: 77  DLGNSNLSGHLVPELGHLEHLQYLRLKDNHLTGLIPRELKNISSLKV------------- 136

Query: 66  XXXXXXXXXXXXXXXXPRMEGPELLGLASYDTNC 100
                             +EGPEL GLA+YDTNC
Sbjct: 137 -----------------MLEGPELQGLAAYDTNC 140

[Close]

BLAST of Carg18007 vs. NCBI nr
Match: PNY15645.1 (somatic embryogenesis receptor kinase 1-like protein [Trifolium pratense])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 4  TRDLGNSNLSGHLVPELGRLEHLQYLE 31
          T DLGNSNLSGHLVPELG+LEHLQYLE
Sbjct: 58 TWDLGNSNLSGHLVPELGKLEHLQYLE 84

[Close]

BLAST of Carg18007 vs. NCBI nr
Match: XP_022548608.1 (leucine-rich repeat protein 1-like, partial [Brassica napus])

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 5  RDLGNSNLSGHLVPELGRLEHLQYLE 31
          RDLGNSNLSGHL PELG+LEHLQYLE
Sbjct: 6  RDLGNSNLSGHLAPELGKLEHLQYLE 31

[Close]

BLAST of Carg18007 vs. TAIR10
Match: AT3G43740.2 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQYL 30
          DLGNSNLSGHLVPELG+LEHLQYL
Sbjct: 76 DLGNSNLSGHLVPELGKLEHLQYL 99

HSP 2 Score: 42.0 bits (97), Expect = 2.6e-04
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 0


Query: 83  RMEGPELLGLASYDTNCT 101
           R+EGPELLGLASYDTNCT
Sbjct: 231 RLEGPELLGLASYDTNCT 248

[Close]

BLAST of Carg18007 vs. TAIR10
Match: AT5G21090.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQY 29
          DLGNSNLSGHL PELG+LEHLQY
Sbjct: 76 DLGNSNLSGHLAPELGKLEHLQY 98

[Close]

BLAST of Carg18007 vs. TAIR10
Match: AT1G71830.1 (somatic embryogenesis receptor-like kinase 1)

HSP 1 Score: 44.7 bits (104), Expect = 4.0e-05
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQYLE 31
          DLGN+ LSGHLVPELG L++LQYLE
Sbjct: 75 DLGNAELSGHLVPELGVLKNLQYLE 99

[Close]

BLAST of Carg18007 vs. TAIR10
Match: AT1G34210.1 (somatic embryogenesis receptor-like kinase 2)

HSP 1 Score: 40.4 bits (93), Expect = 7.5e-04
Identity = 17/24 (70.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 6   DLGNSNLSGHLVPELGRLEHLQYL 30
           DLGN++LSG LVP+LG+L++LQYL
Sbjct: 78  DLGNADLSGQLVPQLGQLKNLQYL 101

[Close]

BLAST of Carg18007 vs. Swiss-Prot
Match: sp|Q9FPJ5|LRR1_ARATH (Leucine-rich repeat protein 1 OS=Arabidopsis thaliana OX=3702 GN=LRR1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.9e-05
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQY 29
          DLGNSNLSGHL PELG+LEHLQY
Sbjct: 76 DLGNSNLSGHLAPELGKLEHLQY 98

[Close]

BLAST of Carg18007 vs. Swiss-Prot
Match: sp|Q6NQP4|LRR2_ARATH (Leucine-rich repeat protein 2 OS=Arabidopsis thaliana OX=3702 GN=LRR2 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.5e-05
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQ 28
          DLGNSNLSGHLVPELG+LEHLQ
Sbjct: 76 DLGNSNLSGHLVPELGKLEHLQ 97

[Close]

BLAST of Carg18007 vs. Swiss-Prot
Match: sp|B8ABC2|LRR1_ORYSI (Leucine-rich repeat protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=LRR1 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-04
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQ 28
          DLGN NLSGHLVPELG+L+HLQ
Sbjct: 72 DLGNLNLSGHLVPELGKLDHLQ 93

[Close]

BLAST of Carg18007 vs. Swiss-Prot
Match: sp|Q5VQP7|LRR1_ORYSJ (Leucine-rich repeat protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LRR1 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-04
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQ 28
          DLGN NLSGHLVPELG+L+HLQ
Sbjct: 72 DLGNLNLSGHLVPELGKLDHLQ 93

[Close]

BLAST of Carg18007 vs. Swiss-Prot
Match: sp|Q94AG2|SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-04
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 6  DLGNSNLSGHLVPELGRLEHLQYLE 31
          DLGN+ LSGHLVPELG L++LQYLE
Sbjct: 75 DLGNAELSGHLVPELGVLKNLQYLE 99

[Close]

BLAST of Carg18007 vs. TrEMBL
Match: tr|A0A2G5EC17|A0A2G5EC17_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00900109v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 6   DLGNSNLSGHLVPELGRLEHLQYLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65
           DLGNSNLSGHLV ELG+LE LQY                                     
Sbjct: 83  DLGNSNLSGHLVSELGKLERLQYF------------------------------------ 129

Query: 66  XXXXXXXXXXXXXXXXPRMEGPELLGLASYDTNCT 101
                           PR+EGPELLGLA+YDTNC+
Sbjct: 143 ------------FENNPRLEGPELLGLATYDTNCS 129

[Close]

BLAST of Carg18007 vs. TrEMBL
Match: tr|A0A2K2D7W5|A0A2K2D7W5_BRADI (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g10816v3 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 36/94 (38.30%), Postives = 38/94 (40.43%), Query Frame = 0


Query: 6   DLGNSNLSGHLVPELGRLEHLQYLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65
           DLGNSNLSGHLVPELG LEHLQYL                                    
Sbjct: 77  DLGNSNLSGHLVPELGHLEHLQYLRLKDNHLTGLIPRELKNISSLKV------------- 136

Query: 66  XXXXXXXXXXXXXXXXPRMEGPELLGLASYDTNC 100
                             +EGPEL GLA+YDTNC
Sbjct: 137 -----------------MLEGPELQGLAAYDTNC 140

[Close]

BLAST of Carg18007 vs. TrEMBL
Match: tr|A0A2K3PK52|A0A2K3PK52_TRIPR (Somatic embryogenesis receptor kinase 1-like protein OS=Trifolium pratense OX=57577 GN=L195_g012346 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 4  TRDLGNSNLSGHLVPELGRLEHLQYLE 31
          T DLGNSNLSGHLVPELG+LEHLQYLE
Sbjct: 58 TWDLGNSNLSGHLVPELGKLEHLQYLE 84

[Close]

BLAST of Carg18007 vs. TrEMBL
Match: tr|N1QSV9|N1QSV9_AEGTA (Somatic embryogenesis receptor kinase 2 OS=Aegilops tauschii OX=37682 GN=F775_15163 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-04
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 3   ATRDLGNSNLSGHLVPELGRLEHLQYLE 31
           + RDLGN NLSGHLVPELG+LEHLQYLE
Sbjct: 127 SVRDLGNLNLSGHLVPELGKLEHLQYLE 154

[Close]

BLAST of Carg18007 vs. TrEMBL
Match: tr|A0A0D9V6X5|A0A0D9V6X5_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-04
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 3   ATRDLGNSNLSGHLVPELGRLEHLQYLE 31
           + RDLGN NLSGHLVPELG+L+HLQYLE
Sbjct: 76  SNRDLGNLNLSGHLVPELGKLDHLQYLE 103

The following BLAST results are available for this feature:

BLAST of Carg18007 vs. NCBI nr


Match Name	E-value	Identity	Description
RCV23863.1	5.0e-06	40.43	hypothetical protein SETIT_5G039000v2 [Setaria italica]	[more]
PIA53302.1	2.5e-05	37.89	hypothetical protein AQUCO_00900109v1 [Aquilegia coerulea]	[more]
PNT70359.1	4.3e-05	38.30	hypothetical protein BRADI_2g10816v3 [Brachypodium distachyon]	[more]
PNY15645.1	1.6e-04	92.59	somatic embryogenesis receptor kinase 1-like protein [Trifolium pratense]	[more]
XP_022548608.1	2.1e-04	92.31	leucine-rich repeat protein 1-like, partial [Brassica napus]	[more]

BLAST of Carg18007 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43740.2	1.9e-07	95.83	Leucine-rich repeat (LRR) family protein	[more]
AT5G21090.1	1.6e-06	91.30	Leucine-rich repeat (LRR) family protein	[more]
AT1G71830.1	4.0e-05	80.00	somatic embryogenesis receptor-like kinase 1	[more]
AT1G34210.1	7.5e-04	70.83	somatic embryogenesis receptor-like kinase 2	[more]

BLAST of Carg18007 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FPJ5\|LRR1_ARATH	2.9e-05	91.30	Leucine-rich repeat protein 1 OS=Arabidopsis thaliana OX=3702 GN=LRR1 PE=1 SV=1	[more]
sp\|Q6NQP4\|LRR2_ARATH	6.5e-05	95.45	Leucine-rich repeat protein 2 OS=Arabidopsis thaliana OX=3702 GN=LRR2 PE=2 SV=1	[more]
sp\|B8ABC2\|LRR1_ORYSI	7.2e-04	86.36	Leucine-rich repeat protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=LRR1 PE=...	[more]
sp\|Q5VQP7\|LRR1_ORYSJ	7.2e-04	86.36	Leucine-rich repeat protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LRR1 P...	[more]
sp\|Q94AG2\|SERK1_ARATH	7.2e-04	80.00	Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1...	[more]

BLAST of Carg18007 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G5EC17\|A0A2G5EC17_AQUCA	1.7e-05	37.89	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00900109v1 PE=4...	[more]
tr\|A0A2K2D7W5\|A0A2K2D7W5_BRADI	2.8e-05	38.30	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g10816v3 P...	[more]
tr\|A0A2K3PK52\|A0A2K3PK52_TRIPR	1.1e-04	92.59	Somatic embryogenesis receptor kinase 1-like protein OS=Trifolium pratense OX=57...	[more]
tr\|N1QSV9\|N1QSV9_AEGTA	1.8e-04	85.71	Somatic embryogenesis receptor kinase 2 OS=Aegilops tauschii OX=37682 GN=F775_15...	[more]
tr\|A0A0D9V6X5\|A0A0D9V6X5_9ORYZ	4.1e-04	82.14	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18007-RA	Carg18007-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 3..95 e-value: 3.0E-23 score: 84.1
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 25..75 e-value: 1.7E-6 score: 27.6
None	No IPR available	PANTHER	PTHR27001:SF258	SUBFAMILY NOT NAMED	coord: 4..76 coord: 78..98
None	No IPR available	PANTHER	PTHR27001	FAMILY NOT NAMED	coord: 4..76 coord: 78..98
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 6..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18007	Cla011065	Watermelon (97103) v1	carwmB0163
Carg18007	Csa1G601530	Cucumber (Chinese Long) v2	carcuB0192
Carg18007	MELO3C015635	Melon (DHL92) v3.5.1	carmeB0178
Carg18007	ClCG03G014070	Watermelon (Charleston Gray)	carwcgB0165
Carg18007	CSPI01G29720	Wild cucumber (PI 183967)	carcpiB0199
Carg18007	Cucsa.142780	Cucumber (Gy14) v1	carcgyB0212
Carg18007	CmaCh11G008150	Cucurbita maxima (Rimu)	carcmaB0231
Carg18007	CmaCh10G009710	Cucurbita maxima (Rimu)	carcmaB0230
Carg18007	CmoCh11G008200	Cucurbita moschata (Rifu)	carcmoB0241
Carg18007	CmoCh10G010240	Cucurbita moschata (Rifu)	carcmoB0240
Carg18007	Lsi06G004460	Bottle gourd (USVL1VR-Ls)	carlsiB155
Carg18007	Cp4.1LG18g01280	Cucurbita pepo (Zucchini)	carcpeB0247
Carg18007	Cp4.1LG04g11710	Cucurbita pepo (Zucchini)	carcpeB0248
Carg18007	CsGy1G029060	Cucumber (Gy14) v2	carcgybB0186
Carg18007	MELO3C015635.2	Melon (DHL92) v3.6.1	carmedB0182
Carg18007	CsaV3_1G042170	Cucumber (Chinese Long) v3	carcucB0199
Carg18007	Cla97C03G064250	Watermelon (97103) v2	carwmbB0178
Carg18007	Bhi02G001412	Wax gourd	carwgoB0222

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18007	Carg16973	Silver-seed gourd	carcarB208

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18007	Wax gourd	carwgoB0221
Carg18007	Silver-seed gourd	carcarB209