Carg17640 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17640
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At2g01860
Location	Cucurbita_argyrosperma_scaffold_119 : 523998 .. 525503 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCCTGTTCTCAACCACTACAATCTCTTCCATTCTGGTGAAACGAAATGGAGGAATTAGCTGCCAGATTCCGGTGGCTCATTTCCAGACCAACTCCAGAAGGCGACCACCAAAAAACCTCCTCTATCCACGGCGGACCAAGCTTCCCCCTGATCCCGGCGTCAATCAATTCTTGAAGAAACGAACCTCTGGCCCTCAGCCTGACACATCCTTCCCAGATTTGATTTCGAGCGAGAAAATCGGATTGCCGGAAGAAGAACTTGACGAGATTGAAGAAACCGCTGCGGATAACTATTTCGCCAATGATGATAACGACAGTGATGTTGTTTGGGATTCGGAAGAAATTGAAGCTATTACATCACTTTTCCGAGGGAGAATTCCTCAGAAACCTGGTAAATTGAACCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAGGACTTCCTAACCCTAAAATTCGCCCAAGAACAGCGGTTTCTTCGCGTGCACTGATGTCTAAGCAAGTCTATAAACGCCCCGATTTTCTTATTGGACTTGCAAGAGCGATTAGAGATTTGAAACCGGAGGAGAATATGTCCAAAGTTCTCAACAGGTGGGCACCATTTTTGCAGAAGGGGTCGCTGTCGTTAACGATCAAGGAACTAGGTCATATGGGTCTTGCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAAGAGCAACCTCGACTCTATCCAGATGATCGTGTTTTGGCCTCTACCGTTGAGGTCCTCGCAAGGAACCATGAACTTAAAATACCTTTCAACCTGGATGAGTTCACTAAACTTGCGAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTCATCAAAGGTGGGAGGTTAAGCCTTGCTTGGAAGCTTCTTGTAGCTGCCAAGAACGGTAAGAGAATGTTGGATCCTAGCGTTTATGTGAAGTTGATATTGGAGATTGGTAAGAACCCTGATAAAAACATGCTGGTACTTGCCTTACTAGATGAACTAGGACAAAGAGAAGCCTTGAATTTAAACCAGCAAGATACATCAGCTATCATTAAGGTCAGCACAAGGCTTGGTAAATTTGAAATTGCTGAAAGACTTTATAGCTGGTATGTTGAATCTGGGCATGAACCCAGTGTGGTTATGTACACTGCTTTAGTTCATAATCGATATTCAGAGAGGAAGTATAGGGAGGCATTATCTGTAGTGTGGGAAATGGAGGCTGCAAACTGTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATGAAGCTTTTTGTTGCTCTTGGGGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTACCCCTACATATTGTATATATAGGAACTTGATTACCATTTATTTAGCTGCTGGCAGGTTAGCCAAGTGTAAGGAAATCTACAAGGAAGCAGAGAATGCTGGATATGTCATGGACAAACAAATTACCTCAATGTTGTTGCAAGCAAAAAGATGA

mRNA sequence

ATGGATTCCCTGTTCTCAACCACTACAATCTCTTCCATTCTGGTGAAACGAAATGGAGGAATTAGCTGCCAGATTCCGGTGGCTCATTTCCAGACCAACTCCAGAAGGCGACCACCAAAAAACCTCCTCTATCCACGGCGGACCAAGCTTCCCCCTGATCCCGGCGTCAATCAATTCTTGAAGAAACGAACCTCTGGCCCTCAGCCTGACACATCCTTCCCAGATTTGATTTCGAGCGAGAAAATCGGATTGCCGGAAGAAGAACTTGACGAGATTGAAGAAACCGCTGCGGATAACTATTTCGCCAATGATGATAACGACAGTGATGTTGTTTGGGATTCGGAAGAAATTGAAGCTATTACATCACTTTTCCGAGGGAGAATTCCTCAGAAACCTGGTAAATTGAACCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAGGACTTCCTAACCCTAAAATTCGCCCAAGAACAGCGGTTTCTTCGCGTGCACTGATGTCTAAGCAAGTCTATAAACGCCCCGATTTTCTTATTGGACTTGCAAGAGCGATTAGAGATTTGAAACCGGAGGAGAATATGTCCAAAGTTCTCAACAGGTGGGCACCATTTTTGCAGAAGGGGTCGCTGTCGTTAACGATCAAGGAACTAGGTCATATGGGTCTTGCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAAGAGCAACCTCGACTCTATCCAGATGATCGTGTTTTGGCCTCTACCGTTGAGGTCCTCGCAAGGAACCATGAACTTAAAATACCTTTCAACCTGGATGAGTTCACTAAACTTGCGAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTCATCAAAGGTGGGAGGTTAAGCCTTGCTTGGAAGCTTCTTGTAGCTGCCAAGAACGGTAAGAGAATGTTGGATCCTAGCGTTTATGTGAAGTTGATATTGGAGATTGGTAAGAACCCTGATAAAAACATGCTGGTACTTGCCTTACTAGATGAACTAGGACAAAGAGAAGCCTTGAATTTAAACCAGCAAGATACATCAGCTATCATTAAGGTCAGCACAAGGCTTGGTAAATTTGAAATTGCTGAAAGACTTTATAGCTGGTATGTTGAATCTGGGCATGAACCCAGTGTGGTTATGTACACTGCTTTAGTTCATAATCGATATTCAGAGAGGAAGTATAGGGAGGCATTATCTGTAGTGTGGGAAATGGAGGCTGCAAACTGTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATGAAGCTTTTTGTTGCTCTTGGGGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTACCCCTACATATTGTATATATAGGAACTTGATTACCATTTATTTAGCTGCTGGCAGGTTAGCCAAGTGTAAGGAAATCTACAAGGAAGCAGAGAATGCTGGATATGTCATGGACAAACAAATTACCTCAATGTTGTTGCAAGCAAAAAGATGA

Coding sequence (CDS)

ATGGATTCCCTGTTCTCAACCACTACAATCTCTTCCATTCTGGTGAAACGAAATGGAGGAATTAGCTGCCAGATTCCGGTGGCTCATTTCCAGACCAACTCCAGAAGGCGACCACCAAAAAACCTCCTCTATCCACGGCGGACCAAGCTTCCCCCTGATCCCGGCGTCAATCAATTCTTGAAGAAACGAACCTCTGGCCCTCAGCCTGACACATCCTTCCCAGATTTGATTTCGAGCGAGAAAATCGGATTGCCGGAAGAAGAACTTGACGAGATTGAAGAAACCGCTGCGGATAACTATTTCGCCAATGATGATAACGACAGTGATGTTGTTTGGGATTCGGAAGAAATTGAAGCTATTACATCACTTTTCCGAGGGAGAATTCCTCAGAAACCTGGTAAATTGAACCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAGGACTTCCTAACCCTAAAATTCGCCCAAGAACAGCGGTTTCTTCGCGTGCACTGATGTCTAAGCAAGTCTATAAACGCCCCGATTTTCTTATTGGACTTGCAAGAGCGATTAGAGATTTGAAACCGGAGGAGAATATGTCCAAAGTTCTCAACAGGTGGGCACCATTTTTGCAGAAGGGGTCGCTGTCGTTAACGATCAAGGAACTAGGTCATATGGGTCTTGCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAAGAGCAACCTCGACTCTATCCAGATGATCGTGTTTTGGCCTCTACCGTTGAGGTCCTCGCAAGGAACCATGAACTTAAAATACCTTTCAACCTGGATGAGTTCACTAAACTTGCGAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTCATCAAAGGTGGGAGGTTAAGCCTTGCTTGGAAGCTTCTTGTAGCTGCCAAGAACGGTAAGAGAATGTTGGATCCTAGCGTTTATGTGAAGTTGATATTGGAGATTGGTAAGAACCCTGATAAAAACATGCTGGTACTTGCCTTACTAGATGAACTAGGACAAAGAGAAGCCTTGAATTTAAACCAGCAAGATACATCAGCTATCATTAAGGTCAGCACAAGGCTTGGTAAATTTGAAATTGCTGAAAGACTTTATAGCTGGTATGTTGAATCTGGGCATGAACCCAGTGTGGTTATGTACACTGCTTTAGTTCATAATCGATATTCAGAGAGGAAGTATAGGGAGGCATTATCTGTAGTGTGGGAAATGGAGGCTGCAAACTGTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATGAAGCTTTTTGTTGCTCTTGGGGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTACCCCTACATATTGTATATATAGGAACTTGATTACCATTTATTTAGCTGCTGGCAGGTTAGCCAAGTGTAAGGAAATCTACAAGGAAGCAGAGAATGCTGGATATGTCATGGACAAACAAATTACCTCAATGTTGTTGCAAGCAAAAAGATGA

Protein sequence

MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFLKKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAITSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPDFLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDKQITSMLLQAKR

Homology

[Close]

BLAST of Carg17640 vs. NCBI nr
Match: XP_022951807.1 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 984.9 bits (2545), Expect = 9.8e-284
Identity = 499/501 (99.60%), Postives = 500/501 (99.80%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDLKPEEN+SKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS
Sbjct: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420
           TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN PFDL
Sbjct: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Carg17640 vs. NCBI nr
Match: XP_023537574.1 (pentatricopeptide repeat-containing protein At2g01860 [Cucurbita pepo subsp. pepo] >XP_023537576.1 pentatricopeptide repeat-containing protein At2g01860 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 971.8 bits (2511), Expect = 8.6e-280
Identity = 489/501 (97.60%), Postives = 496/501 (99.00%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTTTISSILVKRNGG+SCQIP+AHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGVSCQIPMAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTSGP PDTS PDLI SEKIG PEEELDE+EETAADNYFANDDNDSD+VWDSEEIEAI
Sbjct: 61  KKRTSGPHPDTSLPDLIPSEKIGPPEEELDELEETAADNYFANDDNDSDIVWDSEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDL+PEEN+SKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS
Sbjct: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420
           TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAA CPFDL
Sbjct: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAKCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Carg17640 vs. NCBI nr
Match: XP_023001961.1 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita maxima])

HSP 1 Score: 962.6 bits (2487), Expect = 5.2e-277
Identity = 483/501 (96.41%), Postives = 495/501 (98.80%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTT +SSILVKRNGGISCQIP+AHF TNS+RRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTAVSSILVKRNGGISCQIPMAHFLTNSKRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTS P PDTS+PDLI SEKIGLPEEELDE+EETAADNYFANDDNDSD+VWD EEIEAI
Sbjct: 61  KKRTSDPHPDTSYPDLIPSEKIGLPEEELDELEETAADNYFANDDNDSDIVWDPEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDL+PEEN+SKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKNGKRMLDPSV+VKLILEIGKNPDKNMLVLALLDELGQREALNL+QQDTSAIIKVS
Sbjct: 301 LVAAKNGKRMLDPSVHVKLILEIGKNPDKNMLVLALLDELGQREALNLSQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420
           TRLGKFEIAE+LYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL
Sbjct: 361 TRLGKFEIAEKLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Carg17640 vs. NCBI nr
Match: XP_022951808.1 (pentatricopeptide repeat-containing protein At2g01860 isoform X2 [Cucurbita moschata])

HSP 1 Score: 910.6 bits (2352), Expect = 2.3e-261
Identity = 468/501 (93.41%), Postives = 469/501 (93.61%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDLKPEEN+SKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKN                               DELGQREALNLNQQDTSAIIKVS
Sbjct: 301 LVAAKN-------------------------------DELGQREALNLNQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420
           TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN PFDL
Sbjct: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 470

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 470

[Close]

BLAST of Carg17640 vs. NCBI nr
Match: XP_023001962.1 (pentatricopeptide repeat-containing protein At2g01860 isoform X2 [Cucurbita maxima])

HSP 1 Score: 890.2 bits (2299), Expect = 3.3e-255
Identity = 453/501 (90.42%), Postives = 464/501 (92.61%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTT +SSILVKRNGGISCQIP+AHF TNS+RRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTAVSSILVKRNGGISCQIPMAHFLTNSKRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTS P PDTS+PDLI SEKIGLPEEELDE+EETAADNYFANDDNDSD+VWD EEIEAI
Sbjct: 61  KKRTSDPHPDTSYPDLIPSEKIGLPEEELDELEETAADNYFANDDNDSDIVWDPEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDL+PEEN+SKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKN                               DELGQREALNL+QQDTSAIIKVS
Sbjct: 301 LVAAKN-------------------------------DELGQREALNLSQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420
           TRLGKFEIAE+LYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL
Sbjct: 361 TRLGKFEIAEKLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 470

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 470

[Close]

BLAST of Carg17640 vs. TAIR10
Match: AT2G01860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 436.8 bits (1122), Expect = 1.8e-122
Identity = 246/474 (51.90%), Postives = 321/474 (67.72%), Query Frame = 0


Query: 31  QTNSRRRPPKNLLYPRRTKLPPDPGVNQFLKKRTSGPQPDTSFPDLISSEKIGLPEEELD 90
           Q N  ++  KNL  PRRTKLPPD GVN FL+K                      P+ E  
Sbjct: 34  QRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRK----------------------PKIEPL 93

Query: 91  EIEETAADNYFANDDNDSDVVWDSEEIEAITSLFRGRIPQKPGKLNRERPLPL--PLPHK 150
            I                   W+ EEIEAI+SLF+ RIPQKP K +R RPLPL       
Sbjct: 94  VIXXXXXXXXXXXXXXXXXXXWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLXXXXXXX 153

Query: 151 LRPPGLPNPKIRPRTAVSSRALMSKQVYKRPDFLIGLARAIRDL-KPEENMSKVLNRWAP 210
                     I    A+SS   +SKQVYK P FLIGLAR I+ L   + ++S VLN+W  
Sbjct: 154 XXXXXXXXXNIIRSPALSS---VSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWVS 213

Query: 211 FLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLYPDDRVLASTVEVLARNHELKIPF 270
           FL+KGSLS TI+ELGHMGL +RAL+T+ W ++   L PD+R+LAST++VLA++HELK+  
Sbjct: 214 FLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL-- 273

Query: 271 NLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILEIGKNP 330
            L     LAS+ V+EAM++G I+GG L+LA KL++ +K+  R+LD SVYVK+ILEI KNP
Sbjct: 274 -LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKNP 333

Query: 331 DKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESGHEPSVVM 390
           DK  LV+ALL+EL +RE L L+QQD ++I+K+  +LG+FE+ E L+ W+  S  EPSVVM
Sbjct: 334 DKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSVVM 393

Query: 391 YTALVHNRYSERKYREALSVVWEMEAANCPFDLPAYSVVMKLFVALGDLSRAVRYFAKLK 450
           YT ++H+RYSE+KYREA+SVVWEME +NC  DLPAY VV+KLFVAL DL RA+RY++KLK
Sbjct: 394 YTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSKLK 453

Query: 451 EAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDKQITSMLLQAKR 502
           EAGF+PTY IYR++I++Y A+GRL KCKEI KE E+AG  +DK  +  LLQ ++
Sbjct: 454 EAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

[Close]

BLAST of Carg17640 vs. TAIR10
Match: AT5G25630.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-10
Identity = 35/122 (28.69%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 356 IIKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN 415
           ++ V    G+   A+ ++    E+GH PS++ YT L+     +++Y    S+V E+E + 
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 416 CPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCK 475
              D   ++ V+  F   G++  AV+   K+KE G  PT   Y  LI  Y  AG+  +  
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 476 EI 478
           E+
Sbjct: 171 EL 172

[Close]

BLAST of Carg17640 vs. TAIR10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 4.4e-04
Identity = 35/157 (22.29%), Postives = 68/157 (43.31%), Query Frame = 0


Query: 348 LNQQDTSAIIKVSTRLGKFEIAERLYSWYVESGHEPSVVM----YTALVHNRYSERKYRE 407
           L + D  +++K     G +E A  L+ W V S +  ++ +        V     E +Y  
Sbjct: 134 LLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSV 193

Query: 408 ALSVVWEMEAANCPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLIT 467
           A  ++ ++       D+ AY+ ++  +   G   +A+  F ++KE G +PT   Y  ++ 
Sbjct: 194 AAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253

Query: 468 IYLAAGR-LAKCKEIYKEAENAGYVMDKQITSMLLQA 500
           ++   GR   K   +  E  + G   D+   S +L A
Sbjct: 254 VFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSA 290

[Close]

BLAST of Carg17640 vs. Swiss-Prot
Match: sp|Q5XET4|PP142_ARATH (Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX=3702 GN=EMB975 PE=2 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 3.2e-121
Identity = 246/474 (51.90%), Postives = 321/474 (67.72%), Query Frame = 0


Query: 31  QTNSRRRPPKNLLYPRRTKLPPDPGVNQFLKKRTSGPQPDTSFPDLISSEKIGLPEEELD 90
           Q N  ++  KNL  PRRTKLPPD GVN FL+K                      P+ E  
Sbjct: 34  QRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRK----------------------PKIEPL 93

Query: 91  EIEETAADNYFANDDNDSDVVWDSEEIEAITSLFRGRIPQKPGKLNRERPLPL--PLPHK 150
            I                   W+ EEIEAI+SLF+ RIPQKP K +R RPLPL       
Sbjct: 94  VIXXXXXXXXXXXXXXXXXXXWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLXXXXXXX 153

Query: 151 LRPPGLPNPKIRPRTAVSSRALMSKQVYKRPDFLIGLARAIRDL-KPEENMSKVLNRWAP 210
                     I    A+SS   +SKQVYK P FLIGLAR I+ L   + ++S VLN+W  
Sbjct: 154 XXXXXXXXXNIIRSPALSS---VSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWVS 213

Query: 211 FLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLYPDDRVLASTVEVLARNHELKIPF 270
           FL+KGSLS TI+ELGHMGL +RAL+T+ W ++   L PD+R+LAST++VLA++HELK+  
Sbjct: 214 FLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL-- 273

Query: 271 NLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILEIGKNP 330
            L     LAS+ V+EAM++G I+GG L+LA KL++ +K+  R+LD SVYVK+ILEI KNP
Sbjct: 274 -LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKNP 333

Query: 331 DKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESGHEPSVVM 390
           DK  LV+ALL+EL +RE L L+QQD ++I+K+  +LG+FE+ E L+ W+  S  EPSVVM
Sbjct: 334 DKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSVVM 393

Query: 391 YTALVHNRYSERKYREALSVVWEMEAANCPFDLPAYSVVMKLFVALGDLSRAVRYFAKLK 450
           YT ++H+RYSE+KYREA+SVVWEME +NC  DLPAY VV+KLFVAL DL RA+RY++KLK
Sbjct: 394 YTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSKLK 453

Query: 451 EAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDKQITSMLLQAKR 502
           EAGF+PTY IYR++I++Y A+GRL KCKEI KE E+AG  +DK  +  LLQ ++
Sbjct: 454 EAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

[Close]

BLAST of Carg17640 vs. Swiss-Prot
Match: sp|Q8GZ63|PP397_ARATH (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.4e-09
Identity = 35/122 (28.69%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 356 IIKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN 415
           ++ V    G+   A+ ++    E+GH PS++ YT L+     +++Y    S+V E+E + 
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 416 CPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCK 475
              D   ++ V+  F   G++  AV+   K+KE G  PT   Y  LI  Y  AG+  +  
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 476 EI 478
           E+
Sbjct: 171 EL 172

[Close]

BLAST of Carg17640 vs. TrEMBL
Match: tr|A0A1S3CGD0|A0A1S3CGD0_CUCME (pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN=LOC103500594 PE=4 SV=1)

HSP 1 Score: 795.8 bits (2054), Expect = 5.6e-227
Identity = 406/501 (81.04%), Postives = 445/501 (88.82%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           M S+ S T++SSILVK NGGI CQI + HF+ NSRRRPPKNLL PRR KLPPDP VNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
             +TS P P  SF DLISS+         DE EE  A +Y      D+DVVWDS+EIEAI
Sbjct: 61  NNKTSAPSP--SFTDLISSKIF------QDEHEEIHAYDY----TKDTDVVWDSDEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIRP T VSSRAL+SK+VYKRPD
Sbjct: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDL PEEN+SKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
            RL+PDDRVLASTVEVL+RNHELK+P NL+EFTKLASRGVLEAMMRGFIKGG L+LAWKL
Sbjct: 241 RRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAK GKRMLDPSVYVKLILE+GKNPDKN+LVL LL+ELGQREAL LNQQD++ IIKV 
Sbjct: 301 LVAAKKGKRMLDPSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKVC 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420
           TRL KFEIAE+LY WYVESGHEPS+VMYTALVH+RYS+RKYREALS+VWEME+ANCPFDL
Sbjct: 361 TRLRKFEIAEKLYCWYVESGHEPSMVMYTALVHSRYSDRKYREALSLVWEMESANCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAY+VV+KLFVALGDLSRAVRYFAKLKEAGF+PTY +YRN+ITIYL +GRLAK KEIYKE
Sbjct: 421 PAYNVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRNMITIYLVSGRLAKSKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAG++MDKQITSMLLQAKR
Sbjct: 481 AENAGFIMDKQITSMLLQAKR 489

[Close]

BLAST of Carg17640 vs. TrEMBL
Match: tr|A0A0A0LVM0|A0A0A0LVM0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1)

HSP 1 Score: 792.0 bits (2044), Expect = 8.0e-226
Identity = 402/501 (80.24%), Postives = 440/501 (87.82%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDS+ S T++SSILVK NGGI CQ  + HF+ NSRRRPPKNLL PRR KLPP+P VNQF 
Sbjct: 1   MDSIVSATSVSSILVKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFF 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
             +TS P P   F DLISS+         DE EE  A +Y      D+DVVWDS+EIEAI
Sbjct: 61  NNKTSAPSP--PFTDLISSKIF------QDEHEEIHAHDY----TKDTDVVWDSDEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIRP T VSSRAL+SKQVYKRPD
Sbjct: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLAR IRDL PEEN+SKVLNRW PFLQKGSLSLTIKELGHMGL DRAL TFCW QEQ
Sbjct: 181 FLIGLAREIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALNTFCWAQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
            RL+PDDRVLASTVEVL+RNHELK+  NL+EFTKLASRGVLEAMMRGFI+GG L+LAWKL
Sbjct: 241 HRLFPDDRVLASTVEVLSRNHELKVAVNLEEFTKLASRGVLEAMMRGFIRGGSLNLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAK GKRMLDPSVYVKLILE+GKNPDKNMLVL LL+ELGQREAL LNQQD + I+KV 
Sbjct: 301 LVAAKKGKRMLDPSVYVKLILELGKNPDKNMLVLTLLEELGQREALKLNQQDCTTIVKVC 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420
           TRLGKFEIAE+LYSWYVESGHEPS+VMYTALVH+RYS+RKYREALS+VWEME+ NCPFDL
Sbjct: 361 TRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESGNCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGF+PTY +YRN+ITIYL +GRLAKCKEIYKE
Sbjct: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYNVYRNMITIYLVSGRLAKCKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAG++MDKQITSMLLQAKR
Sbjct: 481 AENAGFMMDKQITSMLLQAKR 489

[Close]

BLAST of Carg17640 vs. TrEMBL
Match: tr|A0A2N9HFH8|A0A2N9HFH8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38191 PE=4 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 1.2e-168
Identity = 312/503 (62.03%), Postives = 396/503 (78.73%), Query Frame = 0


Query: 3   SLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFLKK 62
           + F+ +++  I   R+   + ++ +    ++++RR PKNL YPR TKLPPD GVN FLKK
Sbjct: 4   TFFTISSLYPIPCGRDFPKNGRVALMAANSSTKRRLPKNLRYPRSTKLPPDFGVNLFLKK 63

Query: 63  RTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAITS 122
           +T+ P    S  DLI+S    L EE  ++ +E            D+ +VWDS+EIEAI+S
Sbjct: 64  KTTDP----SLTDLINSH---LAEEGEEDTQE-----------EDTGIVWDSDEIEAISS 123

Query: 123 LFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPR----TAVSSRALMSKQVYKR 182
           LFRGRIPQKPGKLNR+RPL     +KLRP GLP PK   +    +A+SSRA +SKQ+YK 
Sbjct: 124 LFRGRIPQKPGKLNRQRPLXXXXXYKLRPAGLPAPKKHVKSVSPSALSSRASLSKQLYKN 183

Query: 183 PDFLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQ 242
           P  LIG+AR I+ L  EE++S +LN+WA FL+KGSLSLTI+ELGHMGL +RALKTFCW Q
Sbjct: 184 PGVLIGIAREIKSLSSEEDVSVILNKWASFLRKGSLSLTIRELGHMGLPERALKTFCWAQ 243

Query: 243 EQPRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAW 302
           +QP+L+PDDR+LASTVEVLARNHELK+PFNL++FT LASRGV+EAM+RGFI+GG L LA 
Sbjct: 244 KQPQLFPDDRILASTVEVLARNHELKVPFNLEKFTALASRGVIEAMVRGFIRGGSLHLAR 303

Query: 303 KLLVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIK 362
           K+L+ AK+GKRMLD SVY KLILE+GKNPDK +LV+ALLDELG+R+  NL+QQD +AI+K
Sbjct: 304 KVLLIAKHGKRMLDSSVYAKLILELGKNPDKQLLVVALLDELGERDDFNLSQQDCTAIMK 363

Query: 363 VSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPF 422
           V  RL KF+I E L++W+ +SGH+PSVVMYT L+H+RYSE+KYREAL+VVWEMEA+NC F
Sbjct: 364 VCIRLRKFDIVESLFNWFKQSGHDPSVVMYTTLIHSRYSEKKYREALAVVWEMEASNCLF 423

Query: 423 DLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIY 482
           DLPAY VV++LFVAL DLSRAVRYF+KLKEAGF PTY +YR+LI IY+ +GRLAKCKE+ 
Sbjct: 424 DLPAYRVVIRLFVALSDLSRAVRYFSKLKEAGFCPTYDLYRDLIKIYMISGRLAKCKEVC 483

Query: 483 KEAENAGYVMDKQITSMLLQAKR 502
           KEA  AG+ +DK+ TS LLQ +R
Sbjct: 484 KEAGQAGFKLDKETTSWLLQFER 488

[Close]

BLAST of Carg17640 vs. TrEMBL
Match: tr|A0A2K2AMC6|A0A2K2AMC6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G252300v3 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 8.2e-162
Identity = 300/482 (62.24%), Postives = 375/482 (77.80%), Query Frame = 0


Query: 22  SCQIPVAHFQTN-SRRRPPKNLLYPRRTKLPPDPGVNQFLKKRTSGPQPDTSFPDLISSE 81
           S  I +AH  T    R+ PKN+ YPRR+KLPPD GVN FLKK    PQ D+         
Sbjct: 28  SSMILMAHSSTRICYRKIPKNIRYPRRSKLPPDFGVNLFLKK----PQTDS--------- 87

Query: 82  KIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAITSLFRGRIPQKPGKLNRERP 141
                ++  D++ E         + N+ ++VW+SEEIEAI+SLFRGRIPQKPGKL RERP
Sbjct: 88  ----VQDHSDDLTEXXXXXXI--EVNNGEIVWESEEIEAISSLFRGRIPQKPGKLGRERP 147

Query: 142 LPLPLPHKLRPPGLPNPKIRPRTAVS-SRALMSKQVYKRPDFLIGLARAIRDLKPEENMS 201
           LPLP+P+KLR  GLP PK      VS SRA +S Q+YK P FLIGLA+ I+ L P++++S
Sbjct: 148 LPLPVPYKLRXLGLPAPKKHVNKQVSLSRASISSQIYKNPSFLIGLAKEIKRLSPDQDVS 207

Query: 202 KVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLYPDDRVLASTVEVLAR 261
            VL+  + +L KGSLSLTI+ELGH+GL +RAL+TFCWVQ+QPRL+PDDRVLASTVEVLAR
Sbjct: 208 VVLDNCSRYLHKGSLSLTIRELGHLGLPERALQTFCWVQKQPRLFPDDRVLASTVEVLAR 267

Query: 262 NHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKL 321
           NH+LK+PFNL++FT LASR V+EAM++G I+GG L LAWKL+  AK+GKRMLDPSVY K+
Sbjct: 268 NHDLKVPFNLEKFTNLASRRVIEAMVKGLIRGGSLKLAWKLISVAKDGKRMLDPSVYAKI 327

Query: 322 ILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVES 381
           ILE+GKNPDK++L  ALLDEL +RE LNL+QQD +A++KV  +LGKFE  E L++W+ +S
Sbjct: 328 ILELGKNPDKHVLAEALLDELAEREDLNLSQQDCTAVMKVCIKLGKFEAVESLFNWFRQS 387

Query: 382 GHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDLPAYSVVMKLFVALGDLSRA 441
           GHEPSVVMYT L+H+RYSE KYREAL+VVWEME ++C FDL AY VV+KLFVAL DL RA
Sbjct: 388 GHEPSVVMYTTLIHSRYSESKYREALAVVWEMEGSDCLFDLTAYRVVIKLFVALNDLPRA 447

Query: 442 VRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDKQITSMLLQA 501
           VRYF+KLKEAG +PTY IYRNLIT+Y+ +GRLAKCKE++KEAE AG+   K++ + LLQ 
Sbjct: 448 VRYFSKLKEAGLSPTYDIYRNLITLYMVSGRLAKCKEVWKEAEMAGFKFSKEMAAGLLQL 490

[Close]

BLAST of Carg17640 vs. TrEMBL
Match: tr|A0A2I4GWH4|A0A2I4GWH4_9ROSI (pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Juglans regia OX=51240 GN=LOC109011476 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 1.8e-161
Identity = 302/496 (60.89%), Postives = 379/496 (76.41%), Query Frame = 0


Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MD   ST T+  I   RN   + ++ +   ++ +RRRPPKNL YPR  K PP+ GVN FL
Sbjct: 1   MDFRLSTITLYPIASDRNFTTTGRVTLL-ARSKTRRRPPKNLRYPRHPKSPPNFGVNLFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEE--LDEIEETAADNYFANDDNDSDVVWDSEEIE 120
           KK TS    D S   LI  +K  L  ++                    ++ + WDS+EIE
Sbjct: 61  KK-TSTNSTDISLAYLIDGKKPRLAGKKGXXXXXXXXXXXXXXXXXRQETGICWDSDEIE 120

Query: 121 AITSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTA----VSSRALMSKQ 180
           AI+SLF+GR+PQKPGKLNRERPL     +KL P GLP PK   ++A    VSSRA +SKQ
Sbjct: 121 AISSLFQGRVPQKPGKLNRERPLXXXXXYKLXPLGLPTPKKHVKSASPLVVSSRASLSKQ 180

Query: 181 VYKRPDFLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTF 240
           VYK P  LIG+AR I+ +  EE++S VLN+WA FL+KGSLSLTI+ELGHMGL +RAL+TF
Sbjct: 181 VYKNPGVLIGIAREIKMISSEEDVSVVLNKWARFLRKGSLSLTIRELGHMGLPERALQTF 240

Query: 241 CWVQEQPRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRL 300
           CW Q+Q +L+PDDR+LASTVEVLARNHELK+PF L +FT LASRGV+EAM+RGFI+GG L
Sbjct: 241 CWAQKQTQLFPDDRILASTVEVLARNHELKVPFKLGKFTSLASRGVMEAMVRGFIRGGSL 300

Query: 301 SLAWKLLVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTS 360
            LAWKLL  A++GKRMLDPS+Y KLILE+GKNPDK+MLV++LLDELG+RE LNL+QQD +
Sbjct: 301 HLAWKLLSVARDGKRMLDPSIYAKLILELGKNPDKHMLVVSLLDELGEREDLNLSQQDCT 360

Query: 361 AIIKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAA 420
           AI+K+  RLGKF++ + L++W+ +SG+EPSVVMYT L+H+ YSERKYREAL++VWEMEA+
Sbjct: 361 AIMKICIRLGKFDVVDGLFNWFKQSGYEPSVVMYTTLIHSHYSERKYREALALVWEMEAS 420

Query: 421 NCPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKC 480
           NC  DLPAY VV+KLFVAL D+SRAVRYF+KLKEAGF+PTY +YR LI IY+ +GRLAKC
Sbjct: 421 NCLLDLPAYRVVIKLFVALNDISRAVRYFSKLKEAGFSPTYDMYRELIKIYMVSGRLAKC 480

Query: 481 KEIYKEAENAGYVMDK 491
           KE+ KEAE AG+ +DK
Sbjct: 481 KEVCKEAEIAGFKLDK 494

The following BLAST results are available for this feature:

BLAST of Carg17640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951807.1	9.8e-284	99.60	pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita mosc...	[more]
XP_023537574.1	8.6e-280	97.60	pentatricopeptide repeat-containing protein At2g01860 [Cucurbita pepo subsp. pep...	[more]
XP_023001961.1	5.2e-277	96.41	pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita maxi...	[more]
XP_022951808.1	2.3e-261	93.41	pentatricopeptide repeat-containing protein At2g01860 isoform X2 [Cucurbita mosc...	[more]
XP_023001962.1	3.3e-255	90.42	pentatricopeptide repeat-containing protein At2g01860 isoform X2 [Cucurbita maxi...	[more]

BLAST of Carg17640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01860.1	1.8e-122	51.90	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G25630.2	2.4e-10	28.69	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G18940.1	4.4e-04	22.29	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg17640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5XET4\|PP142_ARATH	3.2e-121	51.90	Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX...	[more]
sp\|Q8GZ63\|PP397_ARATH	4.4e-09	28.69	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg17640 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGD0\|A0A1S3CGD0_CUCME	5.6e-227	81.04	pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LVM0\|A0A0A0LVM0_CUCSA	8.0e-226	80.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1	[more]
tr\|A0A2N9HFH8\|A0A2N9HFH8_FAGSY	1.2e-168	62.03	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38191 PE=4 SV=1	[more]
tr\|A0A2K2AMC6\|A0A2K2AMC6_POPTR	8.2e-162	62.24	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G252300v3 PE=...	[more]
tr\|A0A2I4GWH4\|A0A2I4GWH4_9ROSI	1.8e-161	60.89	pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Juglans regi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17640-RA	Carg17640-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 183..308 e-value: 6.4E-7 score: 31.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 328..501 e-value: 8.2E-25 score: 90.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 407..465 e-value: 3.7E-5 score: 23.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 454..488 score: 7.092
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 384..418 score: 7.388
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 277..311 score: 5.557
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 349..383 score: 7.476
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 419..453 score: 9.832
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..161
None	No IPR available	PANTHER	PTHR24015:SF642	SUBFAMILY NOT NAMED	coord: 20..500
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 20..500
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 362..486

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17640	CmaCh12G006850	Cucurbita maxima (Rimu)	carcmaB0172
Carg17640	CmoCh12G006210	Cucurbita moschata (Rifu)	carcmoB0181
Carg17640	Cp4.1LG07g05810	Cucurbita pepo (Zucchini)	carcpeB0193

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17640	Silver-seed gourd	carcarB159
Carg17640	Cucumber (Gy14) v2	carcgybB0144
Carg17640	Cucumber (Gy14) v1	carcgyB0164
Carg17640	Cucurbita maxima (Rimu)	carcmaB0174
Carg17640	Cucurbita moschata (Rifu)	carcmoB0183
Carg17640	Cucurbita pepo (Zucchini)	carcpeB0191
Carg17640	Wild cucumber (PI 183967)	carcpiB0150
Carg17640	Cucumber (Chinese Long) v2	carcuB0146
Carg17640	Cucumber (Chinese Long) v3	carcucB0154
Carg17640	Bottle gourd (USVL1VR-Ls)	carlsiB120
Carg17640	Melon (DHL92) v3.5.1	carmeB0135
Carg17640	Melon (DHL92) v3.6.1	carmedB0139
Carg17640	Watermelon (Charleston Gray)	carwcgB0129
Carg17640	Watermelon (97103) v1	carwmB0128
Carg17640	Watermelon (97103) v2	carwmbB0139
Carg17640	Wax gourd	carwgoB0167
Carg17640	Wax gourd	carwgoB0168