Carg17438 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17438
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	c-Myc-binding protein homolog
Location	Cucurbita_argyrosperma_scaffold_084 : 94279 .. 97559 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAACTCACGATCATGGGCCACGGTGATCGAAGGCTCAAGTCGCTATGCGGGGCAAAGCTCAGACACCTGCAGGCCCCTAAACCAATATTCTTGCGAAAATGGGGACGGATTCCATCAAACAATCGCACACCCAACCAGCAAGCAACTGTGGAGGAGGAACCTCCATTTCTTCCCCATGGGACACATCCAGGTCAGATCTAGCGAAATCGACACACCCAATTGCTTGAATCGCTCTATCTTGTTCATAATTCGAACCCCTTTTTCTGCGATTTAGGAAAAAGAAGCGAAGAAGGAAGCATTTAGGAAGTATTTGGAGTCTAATGGCGTTGTTGATGCTCTCACCAAAGGTTGATTCTCACCATTTCTCTGCTTCAATCCGTATTGCGTTTGAATTTTGATACATTTTCTTTTCTGCGTTCTTTTGCTGGTTGAAGTTCTGGTTGCGTTGTTTGAGCAACACGATAAGCCTTCCTCTGCTCTCGAGTAAGTTCTTGCTTTGAGCTTTTGATAGGTGAAGTTAACCATTGTTCTAGCTATTGATTTTGCACCTAATATCTCGTTTGGCTGTTAGACGAACACAACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGACTTCCCCAAAAGGCCTCGTATCAATGGAGAGAGTATTCGTTGATTATAAACCCATGATCATTCCCTAAATTAGCCGATGTGTGACTTTCATCATCCAACATTGGCATTTTCAAATCTCATATTGTTCTACTAATGTTGTCCAATCAATAGTTGATCTTAGTTACAAGCTGTCTAAACAATGTTTTTATCTTATTTTGATTCCTAAACTTTAGTTTCGGTCCATTTTCAAATCCTTTAATCACTTTCTTATTGAAAATAATGGCATGATTCATTCGAATTCTGGTCTGTTTGAGCTTGAGGAGGTTGGATTAGTTTCGTTTTTCTGAATTATTTGAAAGTTGTGAGGAGATTTCAAATCTTTCTCCTTCTGAATCCTGTCAAGCATTCAATCAAAGCATGTTTTATGTTTAGAAAGTCAAACAATAAACTACAAGGTGTTTGCCATGTTAGAAATTTTGTGAGATCCCACATCGGTGGGAGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAAACCTTGAGGGGAGGTCCAAAGAGGACAATATCTGCTAGTGTGGGCTTGGGCTGATATAAATAGTATTGTATCAAAGCCAGGCACCGGGCGATGTGCTAGTGAGGAGGGTGAGCCCTGAAGGGGGGTGGTGGACATGAGGCGGTGTGCCAACAAGGACGCTGGCACCAGGGGGGTGGATTGGAGGGGTATTGGAGAAAGAAGCATTCTTTATAAGGGTTGTGAGATCCCACATCTGTTGGGGAGGAGAACGAAACATTTTTTATAAGGGTGTGGAAACTTCTCTACAGTAGGCGCGTTTTAAAAACCTTGTGGGGAAACCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTACGGTGGGCTTGAGTCATTACAGAACGAGTGCCAGCGAGGATGCTGGTTCCCGAAGGGGGTGGATTATGAGATTCCACATCAGTTGGGGAGGAGAATGAAGCCTTCTTTATAAGGGTGTGGAAACTTCTCCATAGCAAACGCGTTTTAAAAATCTTGAGGGGAAACCCGAAAGGGAAAGCTCAAAAAGGACAATATTTGCTACGGTGGGCTTGGGTCATTACAACACGAGTGCCAGCGAGGACGTTGGTCCCCGAAGGGGGGTGGATTGTGAGATTCCACATCGGTTGGGGAGGAGAATGAAGCCTTCTTTATAAGGGTGTGGAAACTTCTCCATAGTAGACCGTGTTTTCAAAACCTTGAAGGGAAACCCAAAAGGGAAAGCCCAAAGAGGACAATATCTGCTACGGTGGGCTTGGGTCATTACAACACGAGTGCGGGCGAGGACGCTGGGCCCCGAAGGGGGGTGGGGTGGATTGTGAGATTCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACTTCTCCATAGCAGACACGTTTTAAAAACTTTGAGGGGAAACCCGAAAGGGAAAGCCCAAAGAAGACAATATATGCTACGGTGGGCTTGAGTCATTACAGAACGAGTGCCAACGAGGACGCTGGGCCCTGAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAACAGATACGTTTTAAAAACTTTGAAGGAAAGCCCGGAAAGGAAAGTCCAAAGAGGACAATATCTGCTAGCGGTGGTTTTAACCATTACTTATTCTCAACTAGAGTTTTCTTGTGAAAGTTATCATTTACTGTTGCTTGTAATTTGAAATGCTTAAGAAGTGTAGATTTCTTCTTCTTCCTTTCTAAAAATAAATGAATGATTTTATTGAAGAGAACATTCCGATAGGAAGCACTATTGATAGACTTTTTTTCTTTTACTCTCACAGATTTATTCAACAAAGACTAGGCGGTCCATCTATAGCTGAATACGAGAAGTTACAATCCGAGATGGCGGATTTGCAAGTCAAGTATGACGAGCTTTTAGCTACCCACAAGGAAACCTGTAAAGAGGTAGCGTTGAAATTATCGGACTCGATACTATTACACGTTGTTAAGAATATATGTAATGAATAAGTATATCGTGTTGCAGTTGGAAGGACTTAAAAGTTCGCATAACGTCACGACAATGTCTACCAAGGATACCACTGATGACGAGGAGGAAAACGATAAGGTATGAAGGGCTAATTGAGTTGCACATAGGAGGTTGATGGATTTTCTATATGACAGCCAAGAAAAAGAAAGTGATATCTATTTCCTTTAAGGTATGTGAAGATCTTACGCTATGAACGTTAAAAAGTTGAATTGTATGAAGATCATTCATCTTTTTACCTTTGATTCTTTGACATTGTTTGCTTTTGATAACTCTCGCTTTAGTTCTAGTTTTGGTGTGATGTTTTTAGTGTACATTCGAAAATGAAACGGAAAACGTGCATGTGCCATGGAAAGAACATAACTATAATCTCCTTTGCTGAAACTCTCATGGAACAGCTTAAGCCCACTGCTAGCAAATATTATCCTCGTTGGGTTTTCCCTTTCATGTTTCCTCTAAAGGTTTTTAAAACGTGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCC

mRNA sequence

CGAAACTCACGATCATGGGCCACGGTGATCGAAGGCTCAAGTCGCTATGCGGGGCAAAGCTCAGACACCTGCAGGCCCCTAAACCAATATTCTTGCGAAAATGGGGACGGATTCCATCAAACAATCGCACACCCAACCAGCAAGCAACTGTGGAGGAGGAACCTCCATTTCTTCCCCATGGGACACATCCAGGAAAAAGAAGCGAAGAAGGAAGCATTTAGGAAGTATTTGGAGTCTAATGGCGTTGTTGATGCTCTCACCAAAGTTCTGGTTGCGTTGTTTGAGCAACACGATAAGCCTTCCTCTGCTCTCGAATTTATTCAACAAAGACTAGGCGGTCCATCTATAGCTGAATACGAGAAGTTACAATCCGAGATGGCGGATTTGCAAGTCAAGTATGACGAGCTTTTAGCTACCCACAAGGAAACCTGTAAAGAGTTGGAAGGACTTAAAAGTTCGCATAACGTCACGACAATGTCTACCAAGGATACCACTGATGACGAGGAGGAAAACGATAAGGTATGAAGGGCTAATTGAGTTGCACATAGGAGGTTGATGGATTTTCTATATGACAGCCAAGAAAAAGAAAGTGATATCTATTTCCTTTAAGGTATGTGAAGATCTTACGCTATGAACGTTAAAAAGTTGAATTGTATGAAGATCATTCATCTTTTTACCTTTGATTCTTTGACATTGTTTGCTTTTGATAACTCTCGCTTTAGTTCTAGTTTTGGTGTGATGTTTTTAGTGTACATTCGAAAATGAAACGGAAAACGTGCATGTGCCATGGAAAGAACATAACTATAATCTCCTTTGCTGAAACTCTCATGGAACAGCTTAAGCCCACTGCTAGCAAATATTATCCTCGTTGGGTTTTCCCTTTCATGTTTCCTCTAAAGGTTTTTAAAACGTGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCC

Coding sequence (CDS)

ATGGGACACATCCAGGAAAAAGAAGCGAAGAAGGAAGCATTTAGGAAGTATTTGGAGTCTAATGGCGTTGTTGATGCTCTCACCAAAGTTCTGGTTGCGTTGTTTGAGCAACACGATAAGCCTTCCTCTGCTCTCGAATTTATTCAACAAAGACTAGGCGGTCCATCTATAGCTGAATACGAGAAGTTACAATCCGAGATGGCGGATTTGCAAGTCAAGTATGACGAGCTTTTAGCTACCCACAAGGAAACCTGTAAAGAGTTGGAAGGACTTAAAAGTTCGCATAACGTCACGACAATGTCTACCAAGGATACCACTGATGACGAGGAGGAAAACGATAAGGTATGA

Protein sequence

MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEYEKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDKV

Homology

[Close]

BLAST of Carg17438 vs. NCBI nr
Match: XP_022938294.1 (c-Myc-binding protein homolog [Cucurbita moschata])

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-53
Identity = 113/115 (98.26%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY
Sbjct: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDKV 116
           EKLQSEMADLQVKYDELLATHKETCKELEGLKS HNVT MSTKDTTDDEEENDKV
Sbjct: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSLHNVTAMSTKDTTDDEEENDKV 115

[Close]

BLAST of Carg17438 vs. NCBI nr
Match: XP_023537914.1 (c-Myc-binding protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-52
Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQ+DKPSSALEFIQQRLGGPSIAEY
Sbjct: 45  MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQNDKPSSALEFIQQRLGGPSIAEY 104

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDKV 116
           EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVT  STKDTTDDEEENDKV
Sbjct: 105 EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTATSTKDTTDDEEENDKV 159

[Close]

BLAST of Carg17438 vs. NCBI nr
Match: XP_022965975.1 (c-Myc-binding protein homolog [Cucurbita maxima])

HSP 1 Score: 207.6 bits (527), Expect = 2.2e-50
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQ+DKPSSALEFIQQRLGGPSIAEY
Sbjct: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQNDKPSSALEFIQQRLGGPSIAEY 60

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDKV 116
           E+LQSEMADLQVKYDELLATHKETCKEL GL+SSHNVT  S KDTTDDEEENDKV
Sbjct: 61  EQLQSEMADLQVKYDELLATHKETCKELVGLRSSHNVTATSIKDTTDDEEENDKV 115

[Close]

BLAST of Carg17438 vs. NCBI nr
Match: XP_008456430.1 (PREDICTED: C-Myc-binding protein homolog [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 1.6e-48
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           MGH +EKEAKKEAFRKYLESNG+VDALTKVLVAL+EQ+DKPSSALEFIQQRLGGPS AEY
Sbjct: 1   MGHKEEKEAKKEAFRKYLESNGIVDALTKVLVALYEQNDKPSSALEFIQQRLGGPSKAEY 60

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDKV 116
           EKLQSEMADLQVKYDELLATHKETCKELE LKSSHN+T  STKDTTDDE+ENDK+
Sbjct: 61  EKLQSEMADLQVKYDELLATHKETCKELEELKSSHNITVTSTKDTTDDEDENDKL 115

[Close]

BLAST of Carg17438 vs. NCBI nr
Match: XP_004139253.1 (PREDICTED: C-Myc-binding protein homolog [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 4.7e-48
Identity = 103/115 (89.57%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           MGH +EKEAKKEAFRKYLESNG+VDALTKVLVAL+EQ+DKPSSALEFIQQRLGGPS AEY
Sbjct: 1   MGHKEEKEAKKEAFRKYLESNGIVDALTKVLVALYEQNDKPSSALEFIQQRLGGPSKAEY 60

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDKV 116
           EKLQSEMADLQVKYDELLATHKETCKELE LK SHN+T  STKDTTDDEEENDK+
Sbjct: 61  EKLQSEMADLQVKYDELLATHKETCKELEELKCSHNMTVTSTKDTTDDEEENDKL 115

[Close]

BLAST of Carg17438 vs. TAIR10
Match: AT2G14045.1 (unknown protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-34
Identity = 73/109 (66.97%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           M + +EKE KKEAFRKYLES+GV+D+LTKVLV+L+EQ+DKPSSALEFIQQ+LGGPS+++Y
Sbjct: 2   MRYKEEKEVKKEAFRKYLESSGVLDSLTKVLVSLYEQNDKPSSALEFIQQKLGGPSVSDY 61

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDE 110
           EKLQ+E +DLQ+KY+ELLA H+ET +EL G+KS H  +  S+KD  D E
Sbjct: 62  EKLQAEKSDLQIKYNELLAKHQETLRELNGVKSLH--SRNSSKDDADRE 108

[Close]

BLAST of Carg17438 vs. Swiss-Prot
Match: sp|Q2TBP7|MYCBP_BOVIN (c-Myc-binding protein OS=Bos taurus OX=9913 GN=MYCBP PE=3 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-14
Identity = 38/85 (44.71%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGG--PSIA 60
          M H +  ++K+E FR+YLE +GV+D LTKVLVAL+E+ +KP+SAL+F++  LG   P   
Sbjct: 1  MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENP 60

Query: 61 EYEKLQSEMADLQVKYDELLATHKE 84
          E E L+ E+A+++ KY+ ++  +K+
Sbjct: 61 EIELLRLELAEMKEKYEAIVEENKK 85

[Close]

BLAST of Carg17438 vs. Swiss-Prot
Match: sp|Q99417|MYCBP_HUMAN (c-Myc-binding protein OS=Homo sapiens OX=9606 GN=MYCBP PE=1 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-14
Identity = 38/85 (44.71%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGG--PSIA 60
          M H +  ++K+E FR+YLE +GV+D LTKVLVAL+E+ +KP+SAL+F++  LG   P   
Sbjct: 1  MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENP 60

Query: 61 EYEKLQSEMADLQVKYDELLATHKE 84
          E E L+ E+A+++ KY+ ++  +K+
Sbjct: 61 EIELLRLELAEMKEKYEAIVEENKK 85

[Close]

BLAST of Carg17438 vs. Swiss-Prot
Match: sp|Q5R7A8|MYCBP_PONAB (c-Myc-binding protein OS=Pongo abelii OX=9601 GN=MYCBP PE=3 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-14
Identity = 38/85 (44.71%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGG--PSIA 60
          M H +  ++K+E FR+YLE +GV+D LTKVLVAL+E+ +KP+SAL+F++  LG   P   
Sbjct: 1  MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENP 60

Query: 61 EYEKLQSEMADLQVKYDELLATHKE 84
          E E L+ E+A+++ KY+ ++  +K+
Sbjct: 61 EIELLRLELAEIKEKYEAIVEENKK 85

[Close]

BLAST of Carg17438 vs. Swiss-Prot
Match: sp|Q9EQS3|MYCBP_MOUSE (c-Myc-binding protein OS=Mus musculus OX=10090 GN=Mycbp PE=1 SV=5)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-14
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1  MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGG--PSIA 60
          M H +  ++K+E FR+YLE +GV+D LTKVLVAL+E+ +KP+SAL+F++  LG   P   
Sbjct: 1  MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPTSALDFLKHHLGAATPENP 60

Query: 61 EYEKLQSEMADLQVKYDELLATHKE 84
          E E L+ E+A+++ KY+  +  +K+
Sbjct: 61 EIELLRLELAEMKEKYEATVEENKK 85

[Close]

BLAST of Carg17438 vs. Swiss-Prot
Match: sp|Q54I57|MYCBP_DICDI (c-Myc-binding protein homolog OS=Dictyostelium discoideum OX=44689 GN=mycbp PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.7e-13
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 6  EKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEYEKLQS 65
          +  A+KE F+ YLE +GV+DALTKVLV L+E+ DKPS ALEFI++ LG     + + L+ 
Sbjct: 2  QNSAEKEEFKGYLEKSGVIDALTKVLVGLYEESDKPSDALEFIKKHLGNSLGIDVDALKQ 61

Query: 66 EMADLQVKYDELLATHKETCKELE 90
          E ADL+ +   L     +  K+LE
Sbjct: 62 ENADLKAEVSALTQRVDDLSKKLE 85

[Close]

BLAST of Carg17438 vs. TrEMBL
Match: tr|A0A1S3C377|A0A1S3C377_CUCME (c-Myc-binding protein homolog OS=Cucumis melo OX=3656 GN=LOC103496370 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           MGH +EKEAKKEAFRKYLESNG+VDALTKVLVAL+EQ+DKPSSALEFIQQRLGGPS AEY
Sbjct: 1   MGHKEEKEAKKEAFRKYLESNGIVDALTKVLVALYEQNDKPSSALEFIQQRLGGPSKAEY 60

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDKV 116
           EKLQSEMADLQVKYDELLATHKETCKELE LKSSHN+T  STKDTTDDE+ENDK+
Sbjct: 61  EKLQSEMADLQVKYDELLATHKETCKELEELKSSHNITVTSTKDTTDDEDENDKL 115

[Close]

BLAST of Carg17438 vs. TrEMBL
Match: tr|A0A1S3TCE0|A0A1S3TCE0_VIGRR (c-Myc-binding protein homolog OS=Vigna radiata var. radiata OX=3916 GN=LOC106754010 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-35
Identity = 80/113 (70.80%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           M + +EKEAKKEAFRKYLE++G VDALTKVLVAL+EQ+DKPSSA+EFIQQ+L  PSI+EY
Sbjct: 3   MRYKEEKEAKKEAFRKYLETSGAVDALTKVLVALYEQNDKPSSAVEFIQQKLSCPSISEY 62

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEEND 114
           EKLQ+E +DLQ+KY+ELLA H+ TCKELE +KSSH + T+STK+TTD+E   D
Sbjct: 63  EKLQAEFSDLQIKYNELLAAHQRTCKELEEIKSSHVLATVSTKETTDNESPKD 115

[Close]

BLAST of Carg17438 vs. TrEMBL
Match: tr|A0A0S3S511|A0A0S3S511_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G133300 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-35
Identity = 80/113 (70.80%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           M + +EKEAKKEAFRKYLE++G VDALTKVLVAL+EQ+DKPSSA+EFIQQ+L  PSI+EY
Sbjct: 3   MRYKEEKEAKKEAFRKYLETSGAVDALTKVLVALYEQNDKPSSAVEFIQQKLSCPSISEY 62

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEEND 114
           EKLQ+E +DLQ+KY+ELLA H+ TCKELE +KSSH + T+STK+TTD+E   D
Sbjct: 63  EKLQAEFSDLQIKYNELLAAHQRTCKELEEIKSSHVLATVSTKETTDNESPKD 115

[Close]

BLAST of Carg17438 vs. TrEMBL
Match: tr|A0A2P4KIY8|A0A2P4KIY8_QUESU (C-myc-binding protein OS=Quercus suber OX=58331 GN=CFP56_17566 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.9e-35
Identity = 78/113 (69.03%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           M H +EKEAKKEAFRKYL+S+GV+DALTKVLV+L+EQ+DKPSSALEFIQQ+LGGPS++EY
Sbjct: 1   MRHKEEKEAKKEAFRKYLDSSGVLDALTKVLVSLYEQNDKPSSALEFIQQKLGGPSVSEY 60

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEEND 114
           E LQ+E+++LQ+KYDELLA H+ETCKELE LK+S ++   ST++T D E   D
Sbjct: 61  EMLQAELSNLQIKYDELLAEHQETCKELEELKNSRSMAMASTEETIDGETHRD 113

[Close]

BLAST of Carg17438 vs. TrEMBL
Match: tr|A9PH87|A9PH87_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G014100v3 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.7e-35
Identity = 82/114 (71.93%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MGHIQEKEAKKEAFRKYLESNGVVDALTKVLVALFEQHDKPSSALEFIQQRLGGPSIAEY 60
           M + +EKEAKKEAFRKYLES+GV+DALTKVLVAL+EQ+DKPSSALEFIQQ+LGGPS++EY
Sbjct: 2   MRYKEEKEAKKEAFRKYLESSGVLDALTKVLVALYEQNDKPSSALEFIQQKLGGPSLSEY 61

Query: 61  EKLQSEMADLQVKYDELLATHKETCKELEGLKSSHNVTTMSTKDTTDDEEENDK 115
           EKLQ+EM++LQ KY +LL  H+ETCKELE LK+SHNV   S  DTTD E   D+
Sbjct: 62  EKLQAEMSELQNKYGDLLGAHQETCKELEELKNSHNVA--SATDTTDGEAPKDE 113

The following BLAST results are available for this feature:

BLAST of Carg17438 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938294.1	1.7e-53	98.26	c-Myc-binding protein homolog [Cucurbita moschata]	[more]
XP_023537914.1	1.1e-52	97.39	c-Myc-binding protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022965975.1	2.2e-50	93.91	c-Myc-binding protein homolog [Cucurbita maxima]	[more]
XP_008456430.1	1.6e-48	89.57	PREDICTED: C-Myc-binding protein homolog [Cucumis melo]	[more]
XP_004139253.1	4.7e-48	89.57	PREDICTED: C-Myc-binding protein homolog [Cucumis sativus]	[more]

BLAST of Carg17438 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14045.1	1.6e-34	66.97	unknown protein	[more]

BLAST of Carg17438 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2TBP7\|MYCBP_BOVIN	3.0e-14	44.71	c-Myc-binding protein OS=Bos taurus OX=9913 GN=MYCBP PE=3 SV=3	[more]
sp\|Q99417\|MYCBP_HUMAN	3.0e-14	44.71	c-Myc-binding protein OS=Homo sapiens OX=9606 GN=MYCBP PE=1 SV=3	[more]
sp\|Q5R7A8\|MYCBP_PONAB	3.0e-14	44.71	c-Myc-binding protein OS=Pongo abelii OX=9601 GN=MYCBP PE=3 SV=3	[more]
sp\|Q9EQS3\|MYCBP_MOUSE	6.7e-14	44.71	c-Myc-binding protein OS=Mus musculus OX=10090 GN=Mycbp PE=1 SV=5	[more]
sp\|Q54I57\|MYCBP_DICDI	9.7e-13	46.43	c-Myc-binding protein homolog OS=Dictyostelium discoideum OX=44689 GN=mycbp PE=3...	[more]

BLAST of Carg17438 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C377\|A0A1S3C377_CUCME	1.1e-48	89.57	c-Myc-binding protein homolog OS=Cucumis melo OX=3656 GN=LOC103496370 PE=4 SV=1	[more]
tr\|A0A1S3TCE0\|A0A1S3TCE0_VIGRR	1.3e-35	70.80	c-Myc-binding protein homolog OS=Vigna radiata var. radiata OX=3916 GN=LOC106754...	[more]
tr\|A0A0S3S511\|A0A0S3S511_PHAAN	1.3e-35	70.80	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]
tr\|A0A2P4KIY8\|A0A2P4KIY8_QUESU	3.9e-35	69.03	C-myc-binding protein OS=Quercus suber OX=58331 GN=CFP56_17566 PE=4 SV=1	[more]
tr\|A9PH87\|A9PH87_POPTR	8.7e-35	71.93	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G014100v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003713	transcription coactivator activity

Vocabulary: **INTERPRO**
Term	Definition
IPR026060	AMY1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003713	transcription coactivator activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17438-RA	Carg17438-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80
None	No IPR available	PRINTS	PR02028	CMYCBINDINGP	coord: 18..32 score: 68.79 coord: 32..46 score: 49.66 coord: 8..18 score: 68.91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..115
IPR026060	Associate of Myc 1	PANTHER	PTHR13168	ASSOCIATE OF C-MYC AMY-1	coord: 4..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17438	Cla013623	Watermelon (97103) v1	carwmB0242
Carg17438	Csa2G009580	Cucumber (Chinese Long) v2	carcuB0282
Carg17438	MELO3C004419	Melon (DHL92) v3.5.1	carmeB0258
Carg17438	ClCG02G016980	Watermelon (Charleston Gray)	carwcgB0245
Carg17438	CSPI02G02600	Wild cucumber (PI 183967)	carcpiB0286
Carg17438	Cucsa.132920	Cucumber (Gy14) v1	carcgyB0300
Carg17438	CmaCh12G011470	Cucurbita maxima (Rimu)	carcmaB0355
Carg17438	CmaCh05G012300	Cucurbita maxima (Rimu)	carcmaB0356
Carg17438	CmoCh12G011680	Cucurbita moschata (Rifu)	carcmoB0356
Carg17438	Lsi11G004110	Bottle gourd (USVL1VR-Ls)	carlsiB226
Carg17438	Cp4.1LG07g09700	Cucurbita pepo (Zucchini)	carcpeB0361
Carg17438	CsGy2G002700	Cucumber (Gy14) v2	carcgybB0269
Carg17438	MELO3C004419.2	Melon (DHL92) v3.6.1	carmedB0268
Carg17438	CsaV3_2G003760	Cucumber (Chinese Long) v3	carcucB0286
Carg17438	Cla97C02G042720	Watermelon (97103) v2	carwmbB0259
Carg17438	Bhi06G001555	Wax gourd	carwgoB0331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17438	Wax gourd	carwgoB0333
Carg17438	Silver-seed gourd	carcarB297
Carg17438	Cucurbita moschata (Rifu)	carcmoB0357
Carg17438	Cucurbita pepo (Zucchini)	carcpeB0357