Carg17197 (gene) Silver-seed gourd

Overview
NameCarg17197
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGibberellin-regulated protein 2
LocationCucurbita_argyrosperma_scaffold_110 : 386205 .. 387037 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACATTTTAACAATCCTCTGCTTCGTCTCCCATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTATAGCCTTGAACCAACTTCCATCCTCCTAATTTATCACAAACCTCAAATGTTCTTACGCCCAATATATATGGGTTACGTTGCAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGGTAATATATTAATATATTTTATATTTTATATACGTAAAAAAATAATGAAATATCGAGTGTATTAGTTATGATATACCAAATTTAATAGGTCAAAAAATTTAACATTTATTGTGCGTGATCAGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAAATAAAGAATTATTCAAAGTTCTCTGCATATATTATTTGTGCATGCAACGTGTCTGCTACTTAAATCGAATCAGGGTTATGTTGGAGTTTGATTAATGATTATGAGTTTCAAGCGTGTTTGAAATATGAAATTAATGTAAAATAAAGGGAATCTGTGAAAACCAGATTCTTGTGTCTCTGTCTCTTTTGTTTGTTTGGCCTATTATATGAATATAAGAGGTATGAATTATTTTGTACGTTTCTTGGACTTGGAAGAAAAGTGGGTCTGTTTTT

mRNA sequence

AAACATTTTAACAATCCTCTGCTTCGTCTCCCATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAAATAAAGAATTATTCAAAGTTCTCTGCATATATTATTTGTGCATGCAACGTGTCTGCTACTTAAATCGAATCAGGGTTATGTTGGAGTTTGATTAATGATTATGAGTTTCAAGCGTGTTTGAAATATGAAATTAATGTAAAATAAAGGGAATCTGTGAAAACCAGATTCTTGTGTCTCTGTCTCTTTTGTTTGTTTGGCCTATTATATGAATATAAGAGGTATGAATTATTTTGTACGTTTCTTGGACTTGGAAGAAAAGTGGGTCTGTTTTT

Coding sequence (CDS)

ATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAA

Protein sequence

MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Homology
[Close]
BLAST of Carg17197 vs. NCBI nr
Match: XP_023525231.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.7 bits (548), Expect = 7.6e-53
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALLTCVLMSLLVVHLV AD+KVNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVGADDKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]
BLAST of Carg17197 vs. NCBI nr
Match: XP_022982305.1 (gibberellin-regulated protein 1-like [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 1.7e-52
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLV ADEKVNSIHGVAAHPAN+QSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADEKVNSIHGVAAHPANMQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]
BLAST of Carg17197 vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLVAADE+VNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]
BLAST of Carg17197 vs. NCBI nr
Match: XP_022139249.1 (gibberellin-regulated protein 11-like [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 5.5e-35
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MA S LSK L+TCV MSLLV+  V A EKVN   G  A P  IQ+IDCGGACA RCKLSS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHEKVN---GTTADPTKIQNIDCGGACAMRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARC+CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  RPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]
BLAST of Carg17197 vs. NCBI nr
Match: XP_023518636.1 (gibberellin-regulated protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.6 bits (366), Expect = 9.7e-32
Identity = 72/106 (67.92%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAIS LSKAL  CV M+LLV ++      VNSI  V   P N Q+IDCGGAC SRCKLSS
Sbjct: 1   MAISVLSKALFKCVFMTLLVAYM------VNSIDAVVVQPPNAQNIDCGGACGSRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LC RACGTCCARC+CVPPG  G Y+  PCYA +TTHGGRRKCP
Sbjct: 61  RPNLCNRACGTCCARCSCVPPGAFGNYDARPCYADMTTHGGRRKCP 100

[Close]
BLAST of Carg17197 vs. TAIR10
Match: AT1G75750.1 (GAST1 protein homolog 1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-29
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0 

Query: 6   LSKALLTCVLMSLLVVHLVAAD-EKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]
BLAST of Carg17197 vs. TAIR10
Match: AT2G18420.1 (Gibberellin-regulated family protein)

HSP 1 Score: 117.5 bits (293), Expect = 5.1e-27
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0 

Query: 8   KALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKR 67
           + LL  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRP+LC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]
BLAST of Carg17197 vs. TAIR10
Match: AT4G09610.1 (GAST1 protein homolog 2)

HSP 1 Score: 103.6 bits (257), Expect = 7.6e-23
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0 

Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]
BLAST of Carg17197 vs. TAIR10
Match: AT4G09600.1 (GAST1 protein homolog 3)

HSP 1 Score: 101.3 bits (251), Expect = 3.8e-22
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0 

Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPHLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRP+LC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]
BLAST of Carg17197 vs. TAIR10
Match: AT1G74670.1 (Gibberellin-regulated family protein)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-13
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 6   LSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLC 65
           ++K + + +L+++L   +     K    H  +  P +++S  CGG C  RC  +     C
Sbjct: 1   MAKLITSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPC 60

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
              C  CCA+C CVPPGT G  + CPCY +  T  G  KCP
Sbjct: 61  MFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]
BLAST of Carg17197 vs. Swiss-Prot
Match: sp|P46689|GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-28
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0 

Query: 6   LSKALLTCVLMSLLVVHLVAAD-EKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]
BLAST of Carg17197 vs. Swiss-Prot
Match: sp|Q93X17|SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-26
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 0 

Query: 6   LSKALLTCVLMSLLV---VHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRP 65
           +SKAL   +L+SLL+   V  +  D+  ++    AA+  + + IDCGGACA+RC+LSSRP
Sbjct: 3   ISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAY--SYKKIDCGGACAARCRLSSRP 62

Query: 66  HLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            LC RACG   ARCNCVPPGTSG  ETCPCYASLTTHG +RKCP
Sbjct: 63  RLCNRACGXXXARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]
BLAST of Carg17197 vs. Swiss-Prot
Match: sp|F4IQJ4|GASAB_ARATH (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.2e-26
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0 

Query: 8   KALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKR 67
           + LL  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRP+LC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]
BLAST of Carg17197 vs. Swiss-Prot
Match: sp|P46688|GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0 

Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]
BLAST of Carg17197 vs. Swiss-Prot
Match: sp|P46687|GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-21
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0 

Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPHLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRP+LC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]
BLAST of Carg17197 vs. TrEMBL
Match: tr|A0A1R3IXY5|A0A1R3IXY5_COCAP (Gibberellin regulated protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09057 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 69/101 (68.32%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 6   LSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLC 65
           +SKAL+  +L+SLL++ LV AD+ VN     A +P   Q IDCG AC +RCKLSSRPHLC
Sbjct: 3   ISKALIASLLISLLIIQLVEADQLVNDKD--AKYP---QKIDCGAACKARCKLSSRPHLC 62

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            RACGTCCARCNCVPPGT+G  E CPCYASLTTHGG+RKCP
Sbjct: 63  NRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGKRKCP 98

[Close]
BLAST of Carg17197 vs. TrEMBL
Match: tr|A0A1S3CSM7|A0A1S3CSM7_CUCME (gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 0 

Query: 6   LSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLC 65
           + K +   V MSLLV+  V AD+ V    GVAA P   Q+I+CGGACASRCKLSSRP+LC
Sbjct: 3   IPKIIPCLVAMSLLVLCFVEADDMV---VGVAASPTLTQNINCGGACASRCKLSSRPNLC 62

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARC+CVPPGTSG Y  CPCYA LTTHGGRRKCP
Sbjct: 63  KRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]
BLAST of Carg17197 vs. TrEMBL
Match: tr|A0A1U8MS41|A0A1U8MS41_GOSHI (gibberellin-regulated protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107940708 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 8   KALLTCVLMSLLVVHLVAADEKVNSI--HGVAAHPANIQSIDCGGACASRCKLSSRPHLC 67
           KA +  +L+SLL++ LVAAD+ V S       A PA    IDCGGACA+RC+LSSRPHLC
Sbjct: 5   KAFIASLLISLLLLQLVAADQLVTSASKRKGTAPPA---KIDCGGACAARCRLSSRPHLC 64

Query: 68  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 65  KRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 102

[Close]
BLAST of Carg17197 vs. TrEMBL
Match: tr|A0A0D2V3J0|A0A0D2V3J0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G004400 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 8   KALLTCVLMSLLVVHLVAADEKVNSI--HGVAAHPANIQSIDCGGACASRCKLSSRPHLC 67
           KA +  +L+SLL++ LVAAD+ V S       A PA    IDCGGACA+RC+LSSRPHLC
Sbjct: 29  KAFIASLLISLLLLQLVAADQLVTSASKRKGTAPPA---KIDCGGACAARCRLSSRPHLC 88

Query: 68  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 89  KRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 126

[Close]
BLAST of Carg17197 vs. TrEMBL
Match: tr|A0A2P5RQI3|A0A2P5RQI3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13980 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 8   KALLTCVLMSLLVVHLVAADEKVNSI--HGVAAHPANIQSIDCGGACASRCKLSSRPHLC 67
           KA +  +L+SLL++ LVAAD+ V S       A PA    IDCGGACA+RC+LSSRPHLC
Sbjct: 5   KAFIASLLISLLLLQLVAADQLVTSASKRKGTAPPA---KIDCGGACAARCRLSSRPHLC 64

Query: 68  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 65  KRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 102

The following BLAST results are available for this feature:
BLAST of Carg17197 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525231.17.6e-5397.17snakin-2-like [Cucurbita pepo subsp. pepo][more]
XP_022982305.11.7e-5296.23gibberellin-regulated protein 1-like [Cucurbita maxima][more]
XP_022940222.12.9e-5297.17gibberellin-regulated protein 1-like [Cucurbita moschata][more]
XP_022139249.15.5e-3573.58gibberellin-regulated protein 11-like [Momordica charantia][more]
XP_023518636.19.7e-3267.92gibberellin-regulated protein 11-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg17197 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75750.11.9e-2962.75GAST1 protein homolog 1[more]
AT2G18420.15.1e-2758.59Gibberellin-regulated family protein[more]
AT4G09610.17.6e-2353.76GAST1 protein homolog 2[more]
AT4G09600.13.8e-2251.55GAST1 protein homolog 3[more]
AT1G74670.19.4e-1334.65Gibberellin-regulated family protein[more]
BLAST of Carg17197 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P46689|GASA1_ARATH3.4e-2862.75Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV... [more]
sp|Q93X17|SNAK2_SOLTU1.1e-2659.62Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1[more]
sp|F4IQJ4|GASAB_ARATH9.2e-2658.59Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ... [more]
sp|P46688|GASA2_ARATH1.4e-2153.76Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV... [more]
sp|P46687|GASA3_ARATH6.8e-2151.55Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV... [more]
BLAST of Carg17197 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1R3IXY5|A0A1R3IXY5_COCAP1.6e-3068.32Gibberellin regulated protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09057... [more]
tr|A0A1S3CSM7|A0A1S3CSM7_CUCME2.1e-3070.30gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE... [more]
tr|A0A1U8MS41|A0A1U8MS41_GOSHI2.1e-3070.30gibberellin-regulated protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC1079407... [more]
tr|A0A0D2V3J0|A0A0D2V3J0_GOSRA2.1e-3070.30Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G004400 PE=4 ... [more]
tr|A0A2P5RQI3|A0A2P5RQI3_GOSBA2.1e-3070.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13980 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003854GASA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17197-RACarg17197-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003854Gibberellin regulated proteinPFAMPF02704GASAcoord: 47..106
e-value: 9.3E-21
score: 73.7
NoneNo IPR availablePANTHERPTHR23201:SF2GIBBERELLIN-REGULATED PROTEIN 1coord: 6..106
NoneNo IPR availablePANTHERPTHR23201EXTENSIN, PROLINE-RICH PROTEINcoord: 6..106

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17197Cla020839Watermelon (97103) v1carwmB0945
Carg17197Cla022427Watermelon (97103) v1carwmB0944
Carg17197Csa2G368260Cucumber (Chinese Long) v2carcuB0960
Carg17197Csa3G872160Cucumber (Chinese Long) v2carcuB0961
Carg17197MELO3C003752Melon (DHL92) v3.5.1carmeB0928
Carg17197MELO3C011008Melon (DHL92) v3.5.1carmeB0927
Carg17197ClCG08G014330Watermelon (Charleston Gray)carwcgB0922
Carg17197ClCG05G018280Watermelon (Charleston Gray)carwcgB0920
Carg17197CSPI03G43410Wild cucumber (PI 183967)carcpiB0984
Carg17197CSPI02G20820Wild cucumber (PI 183967)carcpiB0983
Carg17197Cucsa.159850Cucumber (Gy14) v1carcgyB1064
Carg17197Cucsa.343020Cucumber (Gy14) v1carcgyB1066
Carg17197CmaCh12G004100Cucurbita maxima (Rimu)carcmaB1292
Carg17197CmaCh01G019710Cucurbita maxima (Rimu)carcmaB1293
Carg17197CmoCh12G003610Cucurbita moschata (Rifu)carcmoB1262
Carg17197CmoCh01G020290Cucurbita moschata (Rifu)carcmoB1263
Carg17197Lsi04G017450Bottle gourd (USVL1VR-Ls)carlsiB863
Carg17197Lsi08G013250Bottle gourd (USVL1VR-Ls)carlsiB864
Carg17197Cp4.1LG02g08010Cucurbita pepo (Zucchini)carcpeB1309
Carg17197Cp4.1LG06g00610Cucurbita pepo (Zucchini)carcpeB1310
Carg17197Cp4.1LG07g03630Cucurbita pepo (Zucchini)carcpeB1311
Carg17197CsGy3G040960Cucumber (Gy14) v2carcgybB0934
Carg17197CsGy2G020550Cucumber (Gy14) v2carcgybB0933
Carg17197MELO3C011008.2Melon (DHL92) v3.6.1carmedB0933
Carg17197MELO3C003753.2Melon (DHL92) v3.6.1carmedB0934
Carg17197CsaV3_2G029490Cucumber (Chinese Long) v3carcucB0988
Carg17197CsaV3_3G045860Cucumber (Chinese Long) v3carcucB0989
Carg17197Cla97C05G099600Watermelon (97103) v2carwmbB0994
Carg17197Cla97C08G157880Watermelon (97103) v2carwmbB0996
Carg17197Bhi04G000133Wax gourdcarwgoB1092
Carg17197Bhi09G001786Wax gourdcarwgoB1097
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17197Carg03996Silver-seed gourdcarcarB647
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17197Silver-seed gourdcarcarB125
Carg17197Silver-seed gourdcarcarB167
Carg17197Cucurbita maxima (Rimu)carcmaB1291
Carg17197Cucurbita maxima (Rimu)carcmaB1294
Carg17197Cucurbita moschata (Rifu)carcmoB1261
Carg17197Cucurbita moschata (Rifu)carcmoB1265
Carg17197Cucurbita pepo (Zucchini)carcpeB1307