Cla020839 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020839
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Gibberellin-regulated family protein (AHRD V1 *--- F4IQJ4_ARATH); contains Interpro domain(s) IPR003854 Gibberellin regulated protein
Location	Chr5 : 26334748 .. 26335265 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTCCTAAACCTCTACTTATCACTTGTCTTTTCATCTCATCTCTTCTCGTTCTTTGTTTTGCTGAAGAAACAAATAAGATGGTAAATTTCAACATCACTCTTGATCTAATCTAATCATACTTTTAATCACTTGAAATTATACTCATATCCGATTTGAGTTTCAGGTTAACTCAATGGATGGTGTTGCGACTAATCCTGTTAAGATTCAAAACATTGGTAAATTAATATTATTGAACTCATTTTATTTTTTTTTTTAATTTTATATATTTTTAGTATTTTGATAAATACAAAGATTATGTATTTGTAAAATTATATATTATATGTTTTCAGATTGTGGAGGAGCTTGTGCGTCTAGGTGCAAATTATCGTCAAGGCCCAACCTATGCAAGAGGGCATGCGGCACGTGCTGTGCACGTTGCAGCTGCGTGCCTCCGGGCACTTCTGGCGGCTACGAAACCTGCCCTTGCTATGCCAACATGACCACTCACGGCGGCCGGAGAAAGTGTCCTTAA

mRNA sequence

ATGGCCATTCCTAAACCTCTACTTATCACTTGTCTTTTCATCTCATCTCTTCTCGTTCTTTGTTTTGCTGAAGAAACAAATAAGATGGTTAACTCAATGGATGGTGTTGCGACTAATCCTGTTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCGTCTAGGTGCAAATTATCGTCAAGGCCCAACCTATGCAAGAGGGCATGCGGCACGTGCTGTGCACGTTGCAGCTGCGTGCCTCCGGGCACTTCTGGCGGCTACGAAACCTGCCCTTGCTATGCCAACATGACCACTCACGGCGGCCGGAGAAAGTGTCCTTAA

Coding sequence (CDS)

ATGGCCATTCCTAAACCTCTACTTATCACTTGTCTTTTCATCTCATCTCTTCTCGTTCTTTGTTTTGCTGAAGAAACAAATAAGATGGTTAACTCAATGGATGGTGTTGCGACTAATCCTGTTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCGTCTAGGTGCAAATTATCGTCAAGGCCCAACCTATGCAAGAGGGCATGCGGCACGTGCTGTGCACGTTGCAGCTGCGTGCCTCCGGGCACTTCTGGCGGCTACGAAACCTGCCCTTGCTATGCCAACATGACCACTCACGGCGGCCGGAGAAAGTGTCCTTAA

Protein sequence

MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP

Homology

[Close]

BLAST of Cla020839 vs. Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-30
Identity = 64/111 (57.66%), Postives = 74/111 (66.67%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVK-----IQNIDCGGACASR 60
           MAI K      LF S LL L   E+   +    D V +N +       + IDCGGACA+R
Sbjct: 1   MAISK-----ALFASLLLSLLLLEQVQSI--QTDQVTSNAISEAAYSYKKIDCGGACAAR 60

Query: 61  CKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           C+LSSRP LC RACGTCCARC+CVPPGTSG  ETCPCYA++TTHG +RKCP
Sbjct: 61  CRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Cla020839 vs. Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-27
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MAI K L+ + L   SLLVL   +   +     +G A      + IDCG AC +RC+LS 
Sbjct: 1   MAISKALIASLLI--SLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSR 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RP LC RACGTCC RC+CVPPGT G Y+ C CYA++TTHGGRRKCP
Sbjct: 61  RPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Cla020839 vs. Swiss-Prot
Match: GASAB_ARATH (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.3e-27
Identity = 61/106 (57.55%), Postives = 66/106 (62.26%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA+ + LL + L   SLLVL F      MV S D           IDC   C  RC LSS
Sbjct: 1   MAVFRVLLASLLI--SLLVLDFVHAD--MVTSNDA--------PKIDCNSRCQERCSLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLC RACGTCCARC+CV PGTSG Y+ CPCY ++TTHGGRRKCP
Sbjct: 61  RPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Cla020839 vs. Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.2e-23
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 43  IQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGR 102
           +  IDCGG C  RC  SSRPNLC RAC +CC RC+CVPPGT+G +  CPCYA++TT GGR
Sbjct: 36  VVKIDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGR 95

Query: 103 RKCP 107
            KCP
Sbjct: 96  LKCP 99

[Close]

BLAST of Cla020839 vs. Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-22
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 17  LLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARC 76
           LL++         V++ DG       ++ IDCGG C  RC  SSR  LC RAC +CC+RC
Sbjct: 11  LLIIVCLTTYELHVHAADGAKVGEGVVK-IDCGGRCKDRCSKSSRTKLCLRACNSCCSRC 70

Query: 77  SCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           +CVPPGTSG    CPCYA++TTHGGR KCP
Sbjct: 71  NCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Cla020839 vs. TrEMBL
Match: A0A0A0LDK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872170 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-40
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA+PK  +I CL  SSLLVLCF E  ++MV  +   A++P K QNIDCGGACASRCKLSS
Sbjct: 1   MALPK--IIVCLLASSLLVLCFVEADDQMVVGV--AASSPTKTQNIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLC RACGTCCARCSCVPPGTSG YE CPCYA +TTHGGRRKCP
Sbjct: 61  RPNLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

[Close]

BLAST of Cla020839 vs. TrEMBL
Match: E1U344_JATCU (Cold-regulated LTCOR12 OS=Jatropha curcas GN=JCGZ_08216 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-32
Identity = 69/106 (65.09%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA  K LLI  L IS LL+L FAE  ++ V S      +P   + IDCG AC +RC+LSS
Sbjct: 1   MAFSK-LLIASLVISLLLLLHFAEADHQTVKSKLDATNSPA--EEIDCGSACTARCQLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLCKRACGTCCARC CVPPGT+G YE CPCYA++TTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

[Close]

BLAST of Cla020839 vs. TrEMBL
Match: C9E1T3_JATCU (Gast1-like protein OS=Jatropha curcas PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA  K LLI  L IS L +L FAE  ++ V S      +P   + IDCG AC +RC+LSS
Sbjct: 1   MAFSK-LLIASLVISLLFLLHFAEADHQTVKSKLDATNSPA--EEIDCGSACTARCQLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLC+RACGTCCARC CVPPGT+G YE CPCYA++TTHGGRRKCP
Sbjct: 61  RPNLCERACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

[Close]

BLAST of Cla020839 vs. TrEMBL
Match: B9GQV4_POPTR (GAST-like gene product family protein OS=Populus trichocarpa GN=POPTR_0002s02420g PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-31
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA+    LI  L +S LLVL FAE  +  VNS    ++ P KI   DCG AC +RC+LSS
Sbjct: 1   MAMATKFLIASLLLS-LLVLHFAEADHDPVNSNLAASSPPKKI---DCGSACKARCQLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RP LCKRACGTCC+RCSCVPPGT+G YE CPCYA++TTHGGRRKCP
Sbjct: 61  RPRLCKRACGTCCSRCSCVPPGTAGNYEACPCYASLTTHGGRRKCP 102

[Close]

BLAST of Cla020839 vs. TrEMBL
Match: A0A0K0KII1_POPCA (GA-stimulated protein OS=Populus canadensis GN=GASA PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-31
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA+    LI  L +S LLVL FAE  +  VNS    ++ P KI   DCG AC +RC+LSS
Sbjct: 1   MAMITKFLIASLLLS-LLVLHFAEADHDPVNSNLAASSPPKKI---DCGSACKARCQLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RP LCKRACGTCC+RCSCVPPGT+G YE CPCYA++TTHGGRRKCP
Sbjct: 61  RPRLCKRACGTCCSRCSCVPPGTAGNYEACPCYASLTTHGGRRKCP 102

[Close]

BLAST of Cla020839 vs. NCBI nr
Match: gi|449437204|ref|XP_004136382.1| (PREDICTED: gibberellin-regulated protein 11 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-40
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA+PK  +I CL  SSLLVLCF E  ++MV  +   A++P K QNIDCGGACASRCKLSS
Sbjct: 1   MALPK--IIVCLLASSLLVLCFVEADDQMVVGV--AASSPTKTQNIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLC RACGTCCARCSCVPPGTSG YE CPCYA +TTHGGRRKCP
Sbjct: 61  RPNLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

[Close]

BLAST of Cla020839 vs. NCBI nr
Match: gi|659132959|ref|XP_008466478.1| (PREDICTED: gibberellin-regulated protein 11-like [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 78/106 (73.58%), Postives = 84/106 (79.25%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MAIPK  +I CL   SLLVLCF E  + +V    GVA +P   QNI+CGGACASRCKLSS
Sbjct: 1   MAIPK--IIPCLVAMSLLVLCFVEADDMVV----GVAASPTLTQNINCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLCKRACGTCCARCSCVPPGTSG Y  CPCYA +TTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Cla020839 vs. NCBI nr
Match: gi|643728988|gb|KDP36925.1| (hypothetical protein JCGZ_08216 [Jatropha curcas])

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-32
Identity = 69/106 (65.09%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA  K LLI  L IS LL+L FAE  ++ V S      +P   + IDCG AC +RC+LSS
Sbjct: 1   MAFSK-LLIASLVISLLLLLHFAEADHQTVKSKLDATNSPA--EEIDCGSACTARCQLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLCKRACGTCCARC CVPPGT+G YE CPCYA++TTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

[Close]

BLAST of Cla020839 vs. NCBI nr
Match: gi|821325021|ref|NP_001295614.1| (gibberellin-regulated protein 1-like precursor [Jatropha curcas])

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA  K LLI  L IS L +L FAE  ++ V S      +P   + IDCG AC +RC+LSS
Sbjct: 1   MAFSK-LLIASLVISLLFLLHFAEADHQTVKSKLDATNSPA--EEIDCGSACTARCQLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RPNLC+RACGTCCARC CVPPGT+G YE CPCYA++TTHGGRRKCP
Sbjct: 61  RPNLCERACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

[Close]

BLAST of Cla020839 vs. NCBI nr
Match: gi|224062005|ref|XP_002300707.1| (GAST-like gene product family protein [Populus trichocarpa])

HSP 1 Score: 142.5 bits (358), Expect = 4.2e-31
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 1   MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSS 60
           MA+    LI  L +S LLVL FAE  +  VNS    ++ P KI   DCG AC +RC+LSS
Sbjct: 1   MAMATKFLIASLLLS-LLVLHFAEADHDPVNSNLAASSPPKKI---DCGSACKARCQLSS 60

Query: 61  RPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKCP 107
           RP LCKRACGTCC+RCSCVPPGT+G YE CPCYA++TTHGGRRKCP
Sbjct: 61  RPRLCKRACGTCCSRCSCVPPGTAGNYEACPCYASLTTHGGRRKCP 102

The following BLAST results are available for this feature:

BLAST of Cla020839 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SNAK2_SOLTU	4.6e-30	57.66	Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1	[more]
GASA1_ARATH	4.8e-27	54.72	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2	[more]
GASAB_ARATH	6.3e-27	57.55	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1	[more]
GASA3_ARATH	7.2e-23	65.63	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1	[more]
GASA2_ARATH	1.2e-22	52.22	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1	[more]

BLAST of Cla020839 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDK8_CUCSA	3.5e-40	74.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872170 PE=4 SV=1	[more]
E1U344_JATCU	2.0e-32	65.09	Cold-regulated LTCOR12 OS=Jatropha curcas GN=JCGZ_08216 PE=2 SV=1	[more]
C9E1T3_JATCU	1.7e-31	63.21	Gast1-like protein OS=Jatropha curcas PE=2 SV=1	[more]
B9GQV4_POPTR	2.9e-31	64.15	GAST-like gene product family protein OS=Populus trichocarpa GN=POPTR_0002s02420...	[more]
A0A0K0KII1_POPCA	5.0e-31	64.15	GA-stimulated protein OS=Populus canadensis GN=GASA PE=2 SV=1	[more]

BLAST of Cla020839 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437204\|ref\|XP_004136382.1\|	5.0e-40	74.53	PREDICTED: gibberellin-regulated protein 11 [Cucumis sativus]	[more]
gi\|659132959\|ref\|XP_008466478.1\|	2.7e-38	73.58	PREDICTED: gibberellin-regulated protein 11-like [Cucumis melo]	[more]
gi\|643728988\|gb\|KDP36925.1\|	2.9e-32	65.09	hypothetical protein JCGZ_08216 [Jatropha curcas]	[more]
gi\|821325021\|ref\|NP_001295614.1\|	2.5e-31	63.21	gibberellin-regulated protein 1-like precursor [Jatropha curcas]	[more]
gi\|224062005\|ref\|XP_002300707.1\|	4.2e-31	64.15	GAST-like gene product family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003854	GASA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006952	defense response
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009741	response to brassinosteroid
biological_process	GO:0009739	response to gibberellin
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0009505	plant-type cell wall
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU11107	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU24180	watermelon EST collection version 2.0	transcribed_cluster
WMU24348	watermelon EST collection version 2.0	transcribed_cluster
WMU31287	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU34449	watermelon EST collection version 2.0	transcribed_cluster
WMU37742	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU49027	watermelon EST collection version 2.0	transcribed_cluster
WMU74389	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020839	Cla020839.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU31287	WMU31287	transcribed_cluster
WMU74389	WMU74389	transcribed_cluster
WMU11107	WMU11107	transcribed_cluster
WMU37742	WMU37742	transcribed_cluster
WMU34449	WMU34449	transcribed_cluster
WMU24180	WMU24180	transcribed_cluster
WMU24348	WMU24348	transcribed_cluster
WMU49027	WMU49027	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 47..106 score: 3.9
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 1..106 score: 1.3
None	No IPR available	PANTHER	PTHR23201:SF2	GIBBERELLIN-REGULATED PROTEIN 1-RELATED	coord: 1..106 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020839	Cla97C05G099600	Watermelon (97103) v2	wmwmbB207
Cla020839	Cla97C08G157880	Watermelon (97103) v2	wmwmbB222
Cla020839	Csa3G872160	Cucumber (Chinese Long) v2	cuwmB244
Cla020839	Csa2G368260	Cucumber (Chinese Long) v2	cuwmB126
Cla020839	MELO3C011008	Melon (DHL92) v3.5.1	mewmB317
Cla020839	MELO3C003752	Melon (DHL92) v3.5.1	mewmB368
Cla020839	ClCG05G018280	Watermelon (Charleston Gray)	wcgwmB285
Cla020839	ClCG08G014330	Watermelon (Charleston Gray)	wcgwmB412
Cla020839	CSPI02G20820	Wild cucumber (PI 183967)	cpiwmB129
Cla020839	CSPI03G43410	Wild cucumber (PI 183967)	cpiwmB243
Cla020839	Cucsa.343020	Cucumber (Gy14) v1	cgywmB615
Cla020839	Cucsa.159850	Cucumber (Gy14) v1	cgywmB294
Cla020839	CmaCh01G019710	Cucurbita maxima (Rimu)	cmawmB440
Cla020839	CmaCh12G004100	Cucurbita maxima (Rimu)	cmawmB159
Cla020839	CmoCh01G020290	Cucurbita moschata (Rifu)	cmowmB434
Cla020839	CmoCh12G003610	Cucurbita moschata (Rifu)	cmowmB145
Cla020839	Lsi04G017450	Bottle gourd (USVL1VR-Ls)	lsiwmB316
Cla020839	Lsi08G013250	Bottle gourd (USVL1VR-Ls)	lsiwmB481
Cla020839	Cp4.1LG02g08010	Cucurbita pepo (Zucchini)	cpewmB559
Cla020839	Cp4.1LG06g00610	Cucurbita pepo (Zucchini)	cpewmB765
Cla020839	Cp4.1LG07g03630	Cucurbita pepo (Zucchini)	cpewmB795
Cla020839	CsGy3G040960	Cucumber (Gy14) v2	cgybwmB230
Cla020839	CsGy2G020550	Cucumber (Gy14) v2	cgybwmB120
Cla020839	MELO3C011008.2	Melon (DHL92) v3.6.1	medwmB311
Cla020839	MELO3C003753.2	Melon (DHL92) v3.6.1	medwmB364
Cla020839	Carg17197	Silver-seed gourd	carwmB0945
Cla020839	Carg03996	Silver-seed gourd	carwmB0981
Cla020839	CsaV3_3G045860	Cucumber (Chinese Long) v3	cucwmB253
Cla020839	CsaV3_2G029490	Cucumber (Chinese Long) v3	cucwmB138
Cla020839	Bhi04G000133	Wax gourd	wgowmB334
Cla020839	Bhi09G001786	Wax gourd	wgowmB618

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla020839	Cla022427	Watermelon (97103) v1	wmwmB059

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020839	Cucurbita maxima (Rimu)	cmawmB026
Cla020839	Cucurbita maxima (Rimu)	cmawmB759
Cla020839	Cucurbita moschata (Rifu)	cmowmB018
Cla020839	Cucurbita moschata (Rifu)	cmowmB753
Cla020839	Melon (DHL92) v3.5.1	mewmB569
Cla020839	Cucumber (Chinese Long) v2	cuwmB496
Cla020839	Cucurbita pepo (Zucchini)	cpewmB109
Cla020839	Bottle gourd (USVL1VR-Ls)	lsiwmB140
Cla020839	Silver-seed gourd	carwmB0102
Cla020839	Silver-seed gourd	carwmB0135
Cla020839	Cucumber (Chinese Long) v3	cucwmB521
Cla020839	Watermelon (97103) v1	wmwmB127
Cla020839	Cucumber (Gy14) v1	cgywmB025