Carg17197-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17197-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Gibberellin-regulated protein 2
Location	Cucurbita_argyrosperma_scaffold_110 : 386205 .. 387037 (-)
Sequence length	625

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACATTTTAACAATCCTCTGCTTCGTCTCCCATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTATAGCCTTGAACCAACTTCCATCCTCCTAATTTATCACAAACCTCAAATGTTCTTACGCCCAATATATATGGGTTACGTTGCAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGGTAATATATTAATATATTTTATATTTTATATACGTAAAAAAATAATGAAATATCGAGTGTATTAGTTATGATATACCAAATTTAATAGGTCAAAAAATTTAACATTTATTGTGCGTGATCAGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAAATAAAGAATTATTCAAAGTTCTCTGCATATATTATTTGTGCATGCAACGTGTCTGCTACTTAAATCGAATCAGGGTTATGTTGGAGTTTGATTAATGATTATGAGTTTCAAGCGTGTTTGAAATATGAAATTAATGTAAAATAAAGGGAATCTGTGAAAACCAGATTCTTGTGTCTCTGTCTCTTTTGTTTGTTTGGCCTATTATATGAATATAAGAGGTATGAATTATTTTGTACGTTTCTTGGACTTGGAAGAAAAGTGGGTCTGTTTTT

mRNA sequence

AAACATTTTAACAATCCTCTGCTTCGTCTCCCATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAAATAAAGAATTATTCAAAGTTCTCTGCATATATTATTTGTGCATGCAACGTGTCTGCTACTTAAATCGAATCAGGGTTATGTTGGAGTTTGATTAATGATTATGAGTTTCAAGCGTGTTTGAAATATGAAATTAATGTAAAATAAAGGGAATCTGTGAAAACCAGATTCTTGTGTCTCTGTCTCTTTTGTTTGTTTGGCCTATTATATGAATATAAGAGGTATGAATTATTTTGTACGTTTCTTGGACTTGGAAGAAAAGTGGGTCTGTTTTT

Coding sequence (CDS)

ATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAA

Protein sequence

MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP

Homology

[Close]

BLAST of Carg17197-RA vs. NCBI nr
Match: XP_023525231.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.7 bits (548), Expect = 7.6e-53
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALLTCVLMSLLVVHLV AD+KVNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVGADDKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Carg17197-RA vs. NCBI nr
Match: XP_022982305.1 (gibberellin-regulated protein 1-like [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 1.7e-52
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLV ADEKVNSIHGVAAHPAN+QSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADEKVNSIHGVAAHPANMQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Carg17197-RA vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLVAADE+VNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Carg17197-RA vs. NCBI nr
Match: XP_022139249.1 (gibberellin-regulated protein 11-like [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 5.5e-35
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MA S LSK L+TCV MSLLV+  V A EKVN   G  A P  IQ+IDCGGACA RCKLSS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHEKVN---GTTADPTKIQNIDCGGACAMRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARC+CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  RPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Carg17197-RA vs. NCBI nr
Match: XP_023518636.1 (gibberellin-regulated protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.6 bits (366), Expect = 9.7e-32
Identity = 72/106 (67.92%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAIS LSKAL  CV M+LLV ++      VNSI  V   P N Q+IDCGGAC SRCKLSS
Sbjct: 1   MAISVLSKALFKCVFMTLLVAYM------VNSIDAVVVQPPNAQNIDCGGACGSRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LC RACGTCCARC+CVPPG  G Y+  PCYA +TTHGGRRKCP
Sbjct: 61  RPNLCNRACGTCCARCSCVPPGAFGNYDARPCYADMTTHGGRRKCP 100

[Close]

BLAST of Carg17197-RA vs. TAIR10
Match: AT1G75750.1 (GAST1 protein homolog 1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-29
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAAD-EKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Carg17197-RA vs. TAIR10
Match: AT2G18420.1 (Gibberellin-regulated family protein)

HSP 1 Score: 117.5 bits (293), Expect = 5.1e-27
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 8   KALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKR 67
           + LL  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRP+LC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Carg17197-RA vs. TAIR10
Match: AT4G09610.1 (GAST1 protein homolog 2)

HSP 1 Score: 103.6 bits (257), Expect = 7.6e-23
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Carg17197-RA vs. TAIR10
Match: AT4G09600.1 (GAST1 protein homolog 3)

HSP 1 Score: 101.3 bits (251), Expect = 3.8e-22
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPHLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRP+LC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Carg17197-RA vs. TAIR10
Match: AT1G74670.1 (Gibberellin-regulated family protein)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-13
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLC 65
           ++K + + +L+++L   +     K    H  +  P +++S  CGG C  RC  +     C
Sbjct: 1   MAKLITSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPC 60

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
              C  CCA+C CVPPGT G  + CPCY +  T  G  KCP
Sbjct: 61  MFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of Carg17197-RA vs. Swiss-Prot
Match: sp|P46689|GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-28
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAAD-EKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Carg17197-RA vs. Swiss-Prot
Match: sp|Q93X17|SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-26
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLV---VHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRP 65
           +SKAL   +L+SLL+   V  +  D+  ++    AA+  + + IDCGGACA+RC+LSSRP
Sbjct: 3   ISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAY--SYKKIDCGGACAARCRLSSRP 62

Query: 66  HLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            LC RACG   ARCNCVPPGTSG  ETCPCYASLTTHG +RKCP
Sbjct: 63  RLCNRACGXXXARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Carg17197-RA vs. Swiss-Prot
Match: sp|F4IQJ4|GASAB_ARATH (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.2e-26
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 8   KALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKR 67
           + LL  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRP+LC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Carg17197-RA vs. Swiss-Prot
Match: sp|P46688|GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Carg17197-RA vs. Swiss-Prot
Match: sp|P46687|GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-21
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPHLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRP+LC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Carg17197-RA vs. TrEMBL
Match: tr|A0A1R3IXY5|A0A1R3IXY5_COCAP (Gibberellin regulated protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09057 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 69/101 (68.32%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLC 65
           +SKAL+  +L+SLL++ LV AD+ VN     A +P   Q IDCG AC +RCKLSSRPHLC
Sbjct: 3   ISKALIASLLISLLIIQLVEADQLVNDKD--AKYP---QKIDCGAACKARCKLSSRPHLC 62

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            RACGTCCARCNCVPPGT+G  E CPCYASLTTHGG+RKCP
Sbjct: 63  NRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGKRKCP 98

[Close]

BLAST of Carg17197-RA vs. TrEMBL
Match: tr|A0A1S3CSM7|A0A1S3CSM7_CUCME (gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLC 65
           + K +   V MSLLV+  V AD+ V    GVAA P   Q+I+CGGACASRCKLSSRP+LC
Sbjct: 3   IPKIIPCLVAMSLLVLCFVEADDMV---VGVAASPTLTQNINCGGACASRCKLSSRPNLC 62

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARC+CVPPGTSG Y  CPCYA LTTHGGRRKCP
Sbjct: 63  KRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Carg17197-RA vs. TrEMBL
Match: tr|A0A1U8MS41|A0A1U8MS41_GOSHI (gibberellin-regulated protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107940708 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 8   KALLTCVLMSLLVVHLVAADEKVNSI--HGVAAHPANIQSIDCGGACASRCKLSSRPHLC 67
           KA +  +L+SLL++ LVAAD+ V S       A PA    IDCGGACA+RC+LSSRPHLC
Sbjct: 5   KAFIASLLISLLLLQLVAADQLVTSASKRKGTAPPA---KIDCGGACAARCRLSSRPHLC 64

Query: 68  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 65  KRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 102

[Close]

BLAST of Carg17197-RA vs. TrEMBL
Match: tr|A0A0D2V3J0|A0A0D2V3J0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G004400 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 8   KALLTCVLMSLLVVHLVAADEKVNSI--HGVAAHPANIQSIDCGGACASRCKLSSRPHLC 67
           KA +  +L+SLL++ LVAAD+ V S       A PA    IDCGGACA+RC+LSSRPHLC
Sbjct: 29  KAFIASLLISLLLLQLVAADQLVTSASKRKGTAPPA---KIDCGGACAARCRLSSRPHLC 88

Query: 68  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 89  KRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 126

[Close]

BLAST of Carg17197-RA vs. TrEMBL
Match: tr|A0A2P5RQI3|A0A2P5RQI3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13980 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 8   KALLTCVLMSLLVVHLVAADEKVNSI--HGVAAHPANIQSIDCGGACASRCKLSSRPHLC 67
           KA +  +L+SLL++ LVAAD+ V S       A PA    IDCGGACA+RC+LSSRPHLC
Sbjct: 5   KAFIASLLISLLLLQLVAADQLVTSASKRKGTAPPA---KIDCGGACAARCRLSSRPHLC 64

Query: 68  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 65  KRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 102

The following BLAST results are available for this feature:

BLAST of Carg17197-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525231.1	7.6e-53	97.17	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982305.1	1.7e-52	96.23	gibberellin-regulated protein 1-like [Cucurbita maxima]	[more]
XP_022940222.1	2.9e-52	97.17	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]
XP_022139249.1	5.5e-35	73.58	gibberellin-regulated protein 11-like [Momordica charantia]	[more]
XP_023518636.1	9.7e-32	67.92	gibberellin-regulated protein 11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17197-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75750.1	1.9e-29	62.75	GAST1 protein homolog 1	[more]
AT2G18420.1	5.1e-27	58.59	Gibberellin-regulated family protein	[more]
AT4G09610.1	7.6e-23	53.76	GAST1 protein homolog 2	[more]
AT4G09600.1	3.8e-22	51.55	GAST1 protein homolog 3	[more]
AT1G74670.1	9.4e-13	34.65	Gibberellin-regulated family protein	[more]

BLAST of Carg17197-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P46689\|GASA1_ARATH	3.4e-28	62.75	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
sp\|Q93X17\|SNAK2_SOLTU	1.1e-26	59.62	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
sp\|F4IQJ4\|GASAB_ARATH	9.2e-26	58.59	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
sp\|P46688\|GASA2_ARATH	1.4e-21	53.76	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
sp\|P46687\|GASA3_ARATH	6.8e-21	51.55	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]

BLAST of Carg17197-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3IXY5\|A0A1R3IXY5_COCAP	1.6e-30	68.32	Gibberellin regulated protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09057...	[more]
tr\|A0A1S3CSM7\|A0A1S3CSM7_CUCME	2.1e-30	70.30	gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE...	[more]
tr\|A0A1U8MS41\|A0A1U8MS41_GOSHI	2.1e-30	70.30	gibberellin-regulated protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC1079407...	[more]
tr\|A0A0D2V3J0\|A0A0D2V3J0_GOSRA	2.1e-30	70.30	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G004400 PE=4 ...	[more]
tr\|A0A2P5RQI3\|A0A2P5RQI3_GOSBA	2.1e-30	70.30	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13980 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003854	GASA

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17197	Carg17197	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17197-RA	Carg17197-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17197-RA.three_prime_UTR.1	Carg17197-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17197-RA.CDS.3	Carg17197-RA.CDS.3	CDS
Carg17197-RA.CDS.2	Carg17197-RA.CDS.2	CDS
Carg17197-RA.CDS.1	Carg17197-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17197-RA.five_prime_UTR.1	Carg17197-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17197-RA.exon.3	Carg17197-RA.exon.3	exon
Carg17197-RA.exon.2	Carg17197-RA.exon.2	exon
Carg17197-RA.exon.1	Carg17197-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 47..106 e-value: 9.3E-21 score: 73.7
None	No IPR available	PANTHER	PTHR23201:SF2	GIBBERELLIN-REGULATED PROTEIN 1	coord: 6..106
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 6..106