Carg17092 (gene) Silver-seed gourd

Overview
NameCarg17092
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_062 : 439292 .. 439675 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

mRNA sequence

ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

Coding sequence (CDS)

ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

Protein sequence

MNSTKSTPRRVLIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLTLCSAEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHALH
Homology
[Close]
BLAST of Carg17092 vs. NCBI nr
Match: XP_011654068.1 (PREDICTED: histidine-rich glycoprotein-like isoform X1 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 7  TPRRVLIV--VTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLT 66
          T R V IV  +TM++A   I++ L PM A+A +P  G ++QCIQGCTKSL+ LT GYC+ 
Sbjct: 10 TSRMVTIVPIMTMIIATVSIVIVLFPMGADA-IPLVGPIAQCIQGCTKSLSTLTPGYCMN 69

Query: 67 LCSAEFHPLS 73
          LC AE+ PL+
Sbjct: 70 LCGAEYSPLA 78

[Close]
BLAST of Carg17092 vs. NCBI nr
Match: XP_011654069.1 (PREDICTED: histidine-rich glycoprotein-like isoform X2 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 7  TPRRVLIV--VTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLT 66
          T R V IV  +TM++A   I++ L PM A+A +P  G ++QCIQGCTKSL+ LT GYC+ 
Sbjct: 10 TSRMVTIVPIMTMIIATVSIVIVLFPMGADA-IPLVGPIAQCIQGCTKSLSTLTPGYCMN 69

Query: 67 LCSAEFHPLS 73
          LC AE+ PL+
Sbjct: 70 LCGAEYSPLA 78

The following BLAST results are available for this feature:
BLAST of Carg17092 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654068.11.3e-0652.86PREDICTED: histidine-rich glycoprotein-like isoform X1 [Cucumis sativus][more]
XP_011654069.11.3e-0652.86PREDICTED: histidine-rich glycoprotein-like isoform X2 [Cucumis sativus][more]
BLAST of Carg17092 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg17092 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg17092 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17092-RACarg17092-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17092MELO3C016690Melon (DHL92) v3.5.1carmeB0175
Carg17092ClCG11G017990Watermelon (Charleston Gray)carwcgB0161
Carg17092CmaCh09G008560Cucurbita maxima (Rimu)carcmaB0224
Carg17092MELO3C016690.2Melon (DHL92) v3.6.1carmedB0178
Carg17092CsaV3_4G033610Cucumber (Chinese Long) v3carcucB0194
Carg17092Cla97C11G224030Watermelon (97103) v2carwmbB0175
Carg17092Bhi09G002812Wax gourdcarwgoB0219
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg17092Wax gourdcarwgoB0217
Carg17092Silver-seed gourdcarcarB171
Carg17092Silver-seed gourdcarcarB204
Carg17092Silver-seed gourdcarcarB206
Carg17092Cucumber (Gy14) v2carcgybB0182
Carg17092Cucumber (Gy14) v2carcgybB0181
Carg17092Cucumber (Gy14) v2carcgybB0185
Carg17092Cucumber (Gy14) v1carcgyB0206
Carg17092Cucumber (Gy14) v1carcgyB0208
Carg17092Cucurbita maxima (Rimu)carcmaB0225
Carg17092Cucurbita maxima (Rimu)carcmaB0227
Carg17092Cucurbita maxima (Rimu)carcmaB0229
Carg17092Cucurbita moschata (Rifu)carcmoB0235
Carg17092Cucurbita moschata (Rifu)carcmoB0237
Carg17092Cucurbita moschata (Rifu)carcmoB0239
Carg17092Cucurbita pepo (Zucchini)carcpeB0241
Carg17092Cucurbita pepo (Zucchini)carcpeB0242
Carg17092Cucurbita pepo (Zucchini)carcpeB0245
Carg17092Wild cucumber (PI 183967)carcpiB0193
Carg17092Wild cucumber (PI 183967)carcpiB0194
Carg17092Wild cucumber (PI 183967)carcpiB0197
Carg17092Cucumber (Chinese Long) v2carcuB0186
Carg17092Cucumber (Chinese Long) v2carcuB0187
Carg17092Cucumber (Chinese Long) v2carcuB0190
Carg17092Cucumber (Chinese Long) v3carcucB0193
Carg17092Cucumber (Chinese Long) v3carcucB0197
Carg17092Bottle gourd (USVL1VR-Ls)carlsiB150
Carg17092Bottle gourd (USVL1VR-Ls)carlsiB151
Carg17092Melon (DHL92) v3.5.1carmeB0172
Carg17092Melon (DHL92) v3.5.1carmeB0177
Carg17092Melon (DHL92) v3.6.1carmedB0175
Carg17092Melon (DHL92) v3.6.1carmedB0180
Carg17092Watermelon (Charleston Gray)carwcgB0164
Carg17092Watermelon (97103) v1carwmB0159
Carg17092Watermelon (97103) v1carwmB0160
Carg17092Watermelon (97103) v2carwmbB0174