Carg17092-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17092-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_062 : 439292 .. 439675 (+)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

mRNA sequence

ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

Coding sequence (CDS)

ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

Protein sequence

MNSTKSTPRRVLIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLTLCSAEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHALH

Homology

[Close]

BLAST of Carg17092-RA vs. NCBI nr
Match: XP_011654068.1 (PREDICTED: histidine-rich glycoprotein-like isoform X1 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 7  TPRRVLIV--VTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLT 66
          T R V IV  +TM++A   I++ L PM A+A +P  G ++QCIQGCTKSL+ LT GYC+ 
Sbjct: 10 TSRMVTIVPIMTMIIATVSIVIVLFPMGADA-IPLVGPIAQCIQGCTKSLSTLTPGYCMN 69

Query: 67 LCSAEFHPLS 73
          LC AE+ PL+
Sbjct: 70 LCGAEYSPLA 78

[Close]

BLAST of Carg17092-RA vs. NCBI nr
Match: XP_011654069.1 (PREDICTED: histidine-rich glycoprotein-like isoform X2 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 7  TPRRVLIV--VTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLT 66
          T R V IV  +TM++A   I++ L PM A+A +P  G ++QCIQGCTKSL+ LT GYC+ 
Sbjct: 10 TSRMVTIVPIMTMIIATVSIVIVLFPMGADA-IPLVGPIAQCIQGCTKSLSTLTPGYCMN 69

Query: 67 LCSAEFHPLS 73
          LC AE+ PL+
Sbjct: 70 LCGAEYSPLA 78

The following BLAST results are available for this feature:

BLAST of Carg17092-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654068.1	1.3e-06	52.86	PREDICTED: histidine-rich glycoprotein-like isoform X1 [Cucumis sativus]	[more]
XP_011654069.1	1.3e-06	52.86	PREDICTED: histidine-rich glycoprotein-like isoform X2 [Cucumis sativus]	[more]

BLAST of Carg17092-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg17092-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17092-RA vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17092	Carg17092	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17092-RA.exon.1	Carg17092-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17092-RA.CDS.1	Carg17092-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17092-RA	Carg17092-RA-protein	polypeptide