CsaV3_4G033610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G033610
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 23809528 .. 23810448 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTAACACCACACAACCAAAAAGGCTTGAAATAGCCAACTCCCCCCTCCTAAACCTTTAAAACATAACAAAAACTTTTCTCCCCTTTCAAACACCACCCCTTGGGTAAATTTGAATTTCCACAAGAAAACTAACACCACACACACACACACAAAAGACGGAGCAAAACAAAGAAGAAAGAGACGACGACGACGACAAACGATCATGATCAATTTAGGTAAAATGTCAAGAACATCTAGAATGGTCACGATCGTTCCCATCATGACGATGATTATTGCTACTGTTAGCATTGTCATTGTCTTGTTTCCGATGGGGGCGGACGCTATCCCGCTTGTCGGTCCAATTGCTCAATGCATCCAAGGGTGCACAAAATCATTGTCAACTTTAACTCCTGGTTATTGCATGAATCTTTGTGGAGCTGAGTATAGCCCTTTAGCAAACACTGTAAAAAATACCGCTCTAGCAAACACTGTACAAAATATTCATCAAGAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTCGAGCATCATCATGAGCATCATGTACAAGTCGAACATCATCATGAGCATCATGTTCAAGTCGAACATCATCATGGTCAACACCATATTCATGGTGTTAATTAATATATCAATTTAGAGTGTGTGTGGTGTGTCTTTTTTTTCTTCTTATTTCTCATCGTTATTCCTTTTACGATAATTGCAAGGAGGTGGATTGAACTCTTCAACTTCTAGAGAGAAAGGTTGTGCCAATTATTCATCTAAGCTCACATGATTATTTTTCATTATTATTATTATTATTATCATTAATAATAATGGAATGGTTGCAACTATTTTAATTGCCTCTTTTTCTTTTCTTGTAATGTGTTCATCTCAAATTTTACCTATTATTATTATACAGTTTCTCGA

mRNA sequence

ATGATCAATTTAGGTAAAATGTCAAGAACATCTAGAATGGTCACGATCGTTCCCATCATGACGATGATTATTGCTACTGTTAGCATTGTCATTGTCTTGTTTCCGATGGGGGCGGACGCTATCCCGCTTGTCGGTCCAATTGCTCAATGCATCCAAGGGTGCACAAAATCATTGTCAACTTTAACTCCTGGTTATTGCATGAATCTTTGTGGAGCTGAGTATAGCCCTTTAGCAAACACTGTAAAAAATACCGCTCTAGCAAACACTGTACAAAATATTCATCAAGAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTCGAGCATCATCATGAGCATCATGTACAAGTCGAACATCATCATGAGCATCATGTTCAAGTCGAACATCATCATGGTCAACACCATATTCATGGTGTTAATTAA

Coding sequence (CDS)

ATGATCAATTTAGGTAAAATGTCAAGAACATCTAGAATGGTCACGATCGTTCCCATCATGACGATGATTATTGCTACTGTTAGCATTGTCATTGTCTTGTTTCCGATGGGGGCGGACGCTATCCCGCTTGTCGGTCCAATTGCTCAATGCATCCAAGGGTGCACAAAATCATTGTCAACTTTAACTCCTGGTTATTGCATGAATCTTTGTGGAGCTGAGTATAGCCCTTTAGCAAACACTGTAAAAAATACCGCTCTAGCAAACACTGTACAAAATATTCATCAAGAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTCGAGCATCATCATGAGCATCATGTACAAGTCGAACATCATCATGAGCATCATGTTCAAGTCGAACATCATCATGGTCAACACCATATTCATGGTGTTAATTAA

Protein sequence

MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLSTLTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVEHHHEHHVQVEHHHEHHVQVEHHHEHHVQVEHHHGQHHIHGVN
Homology
[Close]
BLAST of CsaV3_4G033610 vs. NCBI nr
Match: XP_011654068.1 (PREDICTED: histidine-rich glycoprotein-like isoform X1 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST 60
           MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST
Sbjct: 1   MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST 60

Query: 61  LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVE 103
           LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVE
Sbjct: 61  LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVE 102

[Close]
BLAST of CsaV3_4G033610 vs. NCBI nr
Match: XP_011654069.1 (PREDICTED: histidine-rich glycoprotein-like isoform X2 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST 60
           MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST
Sbjct: 1   MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST 60

Query: 61  LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVE 103
           LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVE
Sbjct: 61  LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVE 102

The following BLAST results are available for this feature:
BLAST of CsaV3_4G033610 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654068.11.5e-46100.00PREDICTED: histidine-rich glycoprotein-like isoform X1 [Cucumis sativus][more]
XP_011654069.11.5e-46100.00PREDICTED: histidine-rich glycoprotein-like isoform X2 [Cucumis sativus][more]
BLAST of CsaV3_4G033610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033610 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G033610.1CsaV3_4G033610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..144

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G033610Carg17092Silver-seed gourdcarcucB0194
CsaV3_4G033610MELO3C016690Melon (DHL92) v3.5.1cucmeB316
CsaV3_4G033610ClCG11G017990Watermelon (Charleston Gray)cucwcgB288
CsaV3_4G033610MELO3C016690.2Melon (DHL92) v3.6.1cucmedB308
CsaV3_4G033610Cla97C11G224030Watermelon (97103) v2cucwmbB281
CsaV3_4G033610Bhi09G002812Wax gourdcucwgoB426
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G033610Wax gourdcucwgoB408
CsaV3_4G033610Cucumber (Chinese Long) v3cuccucB030
CsaV3_4G033610Cucumber (Chinese Long) v3cuccucB183
CsaV3_4G033610Silver-seed gourdcarcucB0172
CsaV3_4G033610Silver-seed gourdcarcucB0344
CsaV3_4G033610Silver-seed gourdcarcucB0690
CsaV3_4G033610Cucumber (Gy14) v2cgybcucB034
CsaV3_4G033610Cucumber (Gy14) v2cgybcucB171
CsaV3_4G033610Cucumber (Gy14) v1cgycucB027
CsaV3_4G033610Cucumber (Gy14) v1cgycucB167
CsaV3_4G033610Cucurbita maxima (Rimu)cmacucB0028
CsaV3_4G033610Cucurbita maxima (Rimu)cmacucB0258
CsaV3_4G033610Cucurbita maxima (Rimu)cmacucB0396
CsaV3_4G033610Cucurbita maxima (Rimu)cmacucB0494
CsaV3_4G033610Cucurbita maxima (Rimu)cmacucB0566
CsaV3_4G033610Cucurbita moschata (Rifu)cmocucB0016
CsaV3_4G033610Cucurbita moschata (Rifu)cmocucB0246
CsaV3_4G033610Cucurbita moschata (Rifu)cmocucB0393
CsaV3_4G033610Cucurbita moschata (Rifu)cmocucB0483
CsaV3_4G033610Cucurbita moschata (Rifu)cmocucB0552
CsaV3_4G033610Cucurbita pepo (Zucchini)cpecucB0042
CsaV3_4G033610Cucurbita pepo (Zucchini)cpecucB0270
CsaV3_4G033610Cucurbita pepo (Zucchini)cpecucB0647
CsaV3_4G033610Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G033610Cucurbita pepo (Zucchini)cpecucB0970
CsaV3_4G033610Wild cucumber (PI 183967)cpicucB039
CsaV3_4G033610Wild cucumber (PI 183967)cpicucB212
CsaV3_4G033610Wild cucumber (PI 183967)cpicucB354
CsaV3_4G033610Bottle gourd (USVL1VR-Ls)cuclsiB291
CsaV3_4G033610Bottle gourd (USVL1VR-Ls)cuclsiB304
CsaV3_4G033610Bottle gourd (USVL1VR-Ls)cuclsiB314
CsaV3_4G033610Melon (DHL92) v3.5.1cucmeB275
CsaV3_4G033610Melon (DHL92) v3.5.1cucmeB333
CsaV3_4G033610Melon (DHL92) v3.6.1cucmedB268
CsaV3_4G033610Melon (DHL92) v3.6.1cucmedB291
CsaV3_4G033610Melon (DHL92) v3.6.1cucmedB326
CsaV3_4G033610Watermelon (Charleston Gray)cucwcgB302
CsaV3_4G033610Watermelon (97103) v1cucwmB346
CsaV3_4G033610Watermelon (97103) v1cucwmB367
CsaV3_4G033610Watermelon (97103) v2cucwmbB272