Carg16518 (gene) Silver-seed gourd

Overview
NameCarg16518
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionglutathione transferase GST 23-like
LocationCucurbita_argyrosperma_scaffold_089 : 119171 .. 120002 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTTAGATCACAATTCTTGTGGTGATATGCAAATAGGTACGAACTCTACTCTTTATGTAGTGCTGAAAATATTAGTCAATCTTGGATGTTGGAGTTGCTCTGAATCTGAACCACCAAAAATGGTGAAGTTGTTGGATTCTGTTCTTCAGTTCTTCGAATTAGCTTTAGCTTTGGCCATTATTTTCTGAATTTCCATTGTTGAGTAGGTAAGCTCCAGGGCTTTGAAGATAGCTGTTATTCAGTGTGGAGGGTTTAACCAATCCAAATACATCAATGTCAGGGACTTGCCTCTTCTTTATGATCCCCAACCTCTGCCCGTCCACGCTGCACAGCCGCACGGCCCAATTGAGGTAAGGATACACTGTTGTCTCGTGAGATTAGTTGAGTTTGAACGTATTTTTTTATACTCAAATCGGCTTAATTAGAACAATTATAAGTTTGTGTCTATGTGGTGAATTAAATTTCTAGAGTATCTAACTAAACATTGATTAATCGGTTCCCGCAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATTGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGGGGAGAACTCTTTAA

mRNA sequence

ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTTAGATCACAATTCTTGTGGTGATATGCAAATAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATTGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGGGGAGAACTCTTTAA

Coding sequence (CDS)

ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTTAGATCACAATTCTTGTGGTGATATGCAAATAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATTGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGGGGAGAACTCTTTAA

Protein sequence

MIAIARKAEKDDCLNMLQSPYELLDHNSCGDMQIAVKKARAEAIEFLRTMPWRQEILHRRGDWHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQRQGRTL
Homology
[Close]
BLAST of Carg16518 vs. NCBI nr
Match: XP_023526831.1 (uncharacterized protein LOC111790215 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRRGDWHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRD 96
           +KARAEAIEFLRTMPWRQEILHRRGD HPGFGVRRNCACDEFPGLY WTHNLKKAALIRD
Sbjct: 31  EKARAEAIEFLRTMPWRQEILHRRGDRHPGFGVRRNCACDEFPGLYVWTHNLKKAALIRD 90

Query: 97  NLPDADKLAGIYKRLYEQRQGRTL 121
           NLPDADKLAGIYKRLYEQRQ R L
Sbjct: 91  NLPDADKLAGIYKRLYEQRQWRIL 114

[Close]
BLAST of Carg16518 vs. NCBI nr
Match: XP_022980445.1 (uncharacterized protein LOC111479812 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 9.9e-33
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRRGDWHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRD 96
           +KARAE IE LRTMPWRQEIL RRGD   GFGVRRNCA DEFP LY WTHNLKKAALIRD
Sbjct: 31  EKARAETIELLRTMPWRQEILRRRGDLR-GFGVRRNCASDEFPRLYVWTHNLKKAALIRD 90

Query: 97  NLPDADKLAGIYKRLYEQRQGRTL 121
           NLPDADKLAGIYKRLYEQRQ R L
Sbjct: 91  NLPDADKLAGIYKRLYEQRQWRIL 113

[Close]
BLAST of Carg16518 vs. NCBI nr
Match: XP_008438421.1 (PREDICTED: glutathione transferase GST 23-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRR--------GDWHPGFGVRRN-------------CAC 96
           +KA+AEAIEFLRT+   ++ L  +        G     FG   +                
Sbjct: 120 EKAKAEAIEFLRTI--EEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGKILLDA 179

Query: 97  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQR 116
           DEFP LYAWT N K+AA+IRDNLPDA KLAG+Y  L +++
Sbjct: 180 DEFPRLYAWTQNFKEAAVIRDNLPDAQKLAGLYNALRDKQ 217

[Close]
BLAST of Carg16518 vs. NCBI nr
Match: KGN56784.1 (hypothetical protein Csa_3G133350 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 76  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRL 112
           D+FP LYAWT N K++A+IRDNLPDA KLA +Y  L
Sbjct: 178 DQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNAL 213

[Close]
BLAST of Carg16518 vs. NCBI nr
Match: XP_011650901.1 (PREDICTED: glutathione transferase GST 23-like [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 76  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRL 112
           D+FP LYAWT N K++A+IRDNLPDA KLA +Y  L
Sbjct: 195 DQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNAL 230

[Close]
BLAST of Carg16518 vs. TrEMBL
Match: tr|A0A1S3AWB4|A0A1S3AWB4_CUCME (glutathione transferase GST 23-like OS=Cucumis melo OX=3656 GN=LOC103483520 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRR--------GDWHPGFGVRRN-------------CAC 96
           +KA+AEAIEFLRT+   ++ L  +        G     FG   +                
Sbjct: 120 EKAKAEAIEFLRTI--EEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGKILLDA 179

Query: 97  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQR 116
           DEFP LYAWT N K+AA+IRDNLPDA KLAG+Y  L +++
Sbjct: 180 DEFPRLYAWTQNFKEAAVIRDNLPDAQKLAGLYNALRDKQ 217

[Close]
BLAST of Carg16518 vs. TrEMBL
Match: tr|A0A0A0L6W3|A0A0A0L6W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133350 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.9e-06
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 76  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRL 112
           D+FP LYAWT N K++A+IRDNLPDA KLA +Y  L
Sbjct: 178 DQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNAL 213

The following BLAST results are available for this feature:
BLAST of Carg16518 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023526831.16.4e-4094.05uncharacterized protein LOC111790215 [Cucurbita pepo subsp. pepo][more]
XP_022980445.19.9e-3385.71uncharacterized protein LOC111479812 [Cucurbita maxima][more]
XP_008438421.13.8e-0842.00PREDICTED: glutathione transferase GST 23-like [Cucumis melo][more]
KGN56784.11.3e-0566.67hypothetical protein Csa_3G133350 [Cucumis sativus][more]
XP_011650901.11.3e-0566.67PREDICTED: glutathione transferase GST 23-like [Cucumis sativus][more]
BLAST of Carg16518 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16518 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16518 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWB4|A0A1S3AWB4_CUCME2.5e-0842.00glutathione transferase GST 23-like OS=Cucumis melo OX=3656 GN=LOC103483520 PE=3... [more]
tr|A0A0A0L6W3|A0A0A0L6W3_CUCSA8.9e-0666.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133350 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16518-RACarg16518-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16518MELO3C006350Melon (DHL92) v3.5.1carmeB0240
Carg16518ClCG05G003710Watermelon (Charleston Gray)carwcgB0226
Carg16518CmoCh14G019090Cucurbita moschata (Rifu)carcmoB0328
Carg16518Cp4.1LG03g18200Cucurbita pepo (Zucchini)carcpeB0334
Carg16518Cla97C05G084380Watermelon (97103) v2carwmbB0236
Carg16518Bhi01G000015Wax gourdcarwgoB0295
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg16518Wax gourdcarwgoB0290
Carg16518Wax gourdcarwgoB0297
Carg16518Silver-seed gourdcarcarB259
Carg16518Silver-seed gourdcarcarB274
Carg16518Silver-seed gourdcarcarB273
Carg16518Silver-seed gourdcarcarB275
Carg16518Cucumber (Gy14) v2carcgybB0251
Carg16518Cucumber (Gy14) v2carcgybB0250
Carg16518Cucumber (Gy14) v2carcgybB0252
Carg16518Cucumber (Gy14) v1carcgyB0275
Carg16518Cucumber (Gy14) v1carcgyB0276
Carg16518Cucurbita maxima (Rimu)carcmaB0325
Carg16518Cucurbita maxima (Rimu)carcmaB0326
Carg16518Cucurbita maxima (Rimu)carcmaB0327
Carg16518Cucurbita maxima (Rimu)carcmaB0328
Carg16518Cucurbita maxima (Rimu)carcmaB0329
Carg16518Cucurbita maxima (Rimu)carcmaB0330
Carg16518Cucurbita moschata (Rifu)carcmoB0329
Carg16518Cucurbita moschata (Rifu)carcmoB0330
Carg16518Cucurbita moschata (Rifu)carcmoB0331
Carg16518Cucurbita moschata (Rifu)carcmoB0332
Carg16518Cucurbita moschata (Rifu)carcmoB0333
Carg16518Cucurbita pepo (Zucchini)carcpeB0331
Carg16518Cucurbita pepo (Zucchini)carcpeB0332
Carg16518Cucurbita pepo (Zucchini)carcpeB0333
Carg16518Cucurbita pepo (Zucchini)carcpeB0335
Carg16518Cucurbita pepo (Zucchini)carcpeB0336
Carg16518Wild cucumber (PI 183967)carcpiB0265
Carg16518Wild cucumber (PI 183967)carcpiB0266
Carg16518Wild cucumber (PI 183967)carcpiB0267
Carg16518Cucumber (Chinese Long) v2carcuB0261
Carg16518Cucumber (Chinese Long) v2carcuB0262
Carg16518Cucumber (Chinese Long) v2carcuB0263
Carg16518Cucumber (Chinese Long) v3carcucB0265
Carg16518Cucumber (Chinese Long) v3carcucB0266
Carg16518Cucumber (Chinese Long) v3carcucB0267
Carg16518Bottle gourd (USVL1VR-Ls)carlsiB209
Carg16518Bottle gourd (USVL1VR-Ls)carlsiB210
Carg16518Melon (DHL92) v3.5.1carmeB0238
Carg16518Melon (DHL92) v3.6.1carmedB0246
Carg16518Melon (DHL92) v3.6.1carmedB0248
Carg16518Watermelon (Charleston Gray)carwcgB0227
Carg16518Watermelon (Charleston Gray)carwcgB0228
Carg16518Watermelon (97103) v1carwmB0223
Carg16518Watermelon (97103) v1carwmB0224
Carg16518Watermelon (97103) v2carwmbB0237
Carg16518Watermelon (97103) v2carwmbB0238