Carg16518-RA (mRNA) Silver-seed gourd

Overview
NameCarg16518-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionglutathione transferase GST 23-like
LocationCucurbita_argyrosperma_scaffold_089 : 119171 .. 120002 (+)
Sequence length363
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTTAGATCACAATTCTTGTGGTGATATGCAAATAGGTACGAACTCTACTCTTTATGTAGTGCTGAAAATATTAGTCAATCTTGGATGTTGGAGTTGCTCTGAATCTGAACCACCAAAAATGGTGAAGTTGTTGGATTCTGTTCTTCAGTTCTTCGAATTAGCTTTAGCTTTGGCCATTATTTTCTGAATTTCCATTGTTGAGTAGGTAAGCTCCAGGGCTTTGAAGATAGCTGTTATTCAGTGTGGAGGGTTTAACCAATCCAAATACATCAATGTCAGGGACTTGCCTCTTCTTTATGATCCCCAACCTCTGCCCGTCCACGCTGCACAGCCGCACGGCCCAATTGAGGTAAGGATACACTGTTGTCTCGTGAGATTAGTTGAGTTTGAACGTATTTTTTTATACTCAAATCGGCTTAATTAGAACAATTATAAGTTTGTGTCTATGTGGTGAATTAAATTTCTAGAGTATCTAACTAAACATTGATTAATCGGTTCCCGCAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATTGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGGGGAGAACTCTTTAA

mRNA sequence

ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTTAGATCACAATTCTTGTGGTGATATGCAAATAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATTGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGGGGAGAACTCTTTAA

Coding sequence (CDS)

ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTTAGATCACAATTCTTGTGGTGATATGCAAATAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATTGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGGGGAGAACTCTTTAA

Protein sequence

MIAIARKAEKDDCLNMLQSPYELLDHNSCGDMQIAVKKARAEAIEFLRTMPWRQEILHRRGDWHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQRQGRTL
Homology
[Close]
BLAST of Carg16518-RA vs. NCBI nr
Match: XP_023526831.1 (uncharacterized protein LOC111790215 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRRGDWHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRD 96
           +KARAEAIEFLRTMPWRQEILHRRGD HPGFGVRRNCACDEFPGLY WTHNLKKAALIRD
Sbjct: 31  EKARAEAIEFLRTMPWRQEILHRRGDRHPGFGVRRNCACDEFPGLYVWTHNLKKAALIRD 90

Query: 97  NLPDADKLAGIYKRLYEQRQGRTL 121
           NLPDADKLAGIYKRLYEQRQ R L
Sbjct: 91  NLPDADKLAGIYKRLYEQRQWRIL 114

[Close]
BLAST of Carg16518-RA vs. NCBI nr
Match: XP_022980445.1 (uncharacterized protein LOC111479812 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 9.9e-33
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRRGDWHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRD 96
           +KARAE IE LRTMPWRQEIL RRGD   GFGVRRNCA DEFP LY WTHNLKKAALIRD
Sbjct: 31  EKARAETIELLRTMPWRQEILRRRGDLR-GFGVRRNCASDEFPRLYVWTHNLKKAALIRD 90

Query: 97  NLPDADKLAGIYKRLYEQRQGRTL 121
           NLPDADKLAGIYKRLYEQRQ R L
Sbjct: 91  NLPDADKLAGIYKRLYEQRQWRIL 113

[Close]
BLAST of Carg16518-RA vs. NCBI nr
Match: XP_008438421.1 (PREDICTED: glutathione transferase GST 23-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRR--------GDWHPGFGVRRN-------------CAC 96
           +KA+AEAIEFLRT+   ++ L  +        G     FG   +                
Sbjct: 120 EKAKAEAIEFLRTI--EEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGKILLDA 179

Query: 97  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQR 116
           DEFP LYAWT N K+AA+IRDNLPDA KLAG+Y  L +++
Sbjct: 180 DEFPRLYAWTQNFKEAAVIRDNLPDAQKLAGLYNALRDKQ 217

[Close]
BLAST of Carg16518-RA vs. NCBI nr
Match: KGN56784.1 (hypothetical protein Csa_3G133350 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 76  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRL 112
           D+FP LYAWT N K++A+IRDNLPDA KLA +Y  L
Sbjct: 178 DQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNAL 213

[Close]
BLAST of Carg16518-RA vs. NCBI nr
Match: XP_011650901.1 (PREDICTED: glutathione transferase GST 23-like [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 76  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRL 112
           D+FP LYAWT N K++A+IRDNLPDA KLA +Y  L
Sbjct: 195 DQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNAL 230

[Close]
BLAST of Carg16518-RA vs. TrEMBL
Match: tr|A0A1S3AWB4|A0A1S3AWB4_CUCME (glutathione transferase GST 23-like OS=Cucumis melo OX=3656 GN=LOC103483520 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRR--------GDWHPGFGVRRN-------------CAC 96
           +KA+AEAIEFLRT+   ++ L  +        G     FG   +                
Sbjct: 120 EKAKAEAIEFLRTI--EEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGKILLDA 179

Query: 97  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQR 116
           DEFP LYAWT N K+AA+IRDNLPDA KLAG+Y  L +++
Sbjct: 180 DEFPRLYAWTQNFKEAAVIRDNLPDAQKLAGLYNALRDKQ 217

[Close]
BLAST of Carg16518-RA vs. TrEMBL
Match: tr|A0A0A0L6W3|A0A0A0L6W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133350 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.9e-06
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 76  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRL 112
           D+FP LYAWT N K++A+IRDNLPDA KLA +Y  L
Sbjct: 178 DQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNAL 213

The following BLAST results are available for this feature:
BLAST of Carg16518-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023526831.16.4e-4094.05uncharacterized protein LOC111790215 [Cucurbita pepo subsp. pepo][more]
XP_022980445.19.9e-3385.71uncharacterized protein LOC111479812 [Cucurbita maxima][more]
XP_008438421.13.8e-0842.00PREDICTED: glutathione transferase GST 23-like [Cucumis melo][more]
KGN56784.11.3e-0566.67hypothetical protein Csa_3G133350 [Cucumis sativus][more]
XP_011650901.11.3e-0566.67PREDICTED: glutathione transferase GST 23-like [Cucumis sativus][more]
BLAST of Carg16518-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16518-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16518-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWB4|A0A1S3AWB4_CUCME2.5e-0842.00glutathione transferase GST 23-like OS=Cucumis melo OX=3656 GN=LOC103483520 PE=3... [more]
tr|A0A0A0L6W3|A0A0A0L6W3_CUCSA8.9e-0666.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133350 PE=3 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg16518Carg16518gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16518-RA.exon.1Carg16518-RA.exon.1exon
Carg16518-RA.exon.2Carg16518-RA.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16518-RA.CDS.1Carg16518-RA.CDS.1CDS
Carg16518-RA.CDS.2Carg16518-RA.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg16518-RACarg16518-RA-proteinpolypeptide