Carg16108 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16108
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RPM1-interacting protein 4-like
Location	Cucurbita_argyrosperma_scaffold_068 : 135843 .. 138942 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAGACTAAGGGCCCCGCTTTCCACTTCTATAATATCCCATTACCCAACTCCTTCTCTTGTCCTACTCCCACGCCCCCTCTTCTCTCTCAATCAACCATACACTCCTTTACCTTCAAAATCCATCATCGCCACCATCTTCTCGTCGAACCCCACTCATGGCGGTAAGAAATCCACTCACACCCAAGTTTCTTTCATCGCTAATCTCTTGTAACTTGCCCCAGATTTTGATTTCAGGGCTTGTTCGTTCTTGAGTTCGAGCTTTTTTATTTGATTGTTAAAGGGGTTTTGAAATATTGGAGGGTTTTATGAAATGAATCTGGTTCTGCTGGTTCTGTATTTACTACCTTTGTTGATTGCTTTTGCCCTTGTACCCACACCCACTTTCTTTGTTGTTGAAGTGTTTACAAGGGTTTAGCCCTTTCTGCATGGTTTTTTCAGTTTGCTAATTTTCGATGGGCTTTTCACTTGATCAGTTTTCTTAAACGTTTATGCTGAAGAAAAATTTGGAGAGTTCTTGTTTCTTTGGCATTCTATGACAAATATGTGTAAATTACAGACAAACACGAAATCCCCAACATATATCGTTTGATTTGGTGTTAAAGTTGAGCTCTGGATGTTTTTTTTTTTGTTTGTTTCCTATGATCTGCCAAATGTCCTACAGCTAGTTGATAGTCTCAGTTAAGAATTATCGAGGATTAGATGAAATCTCATGTACGGTTCTATCGAGTGCGTTGTATTTAGGTTGGTAAGCTTTGTATGATGAATGTTGAATCTAACTTCCTTGGATGATCTGAAGTGTTGCTTCATGAAGGCTTTCAGTTTCTCCTCTGTCTTTACCATGCTCTACTGAAGTTTTTCTAGATGTTTCTGATATTCGATTGGGCAATTCTCGATTGTTTCGAGATTGTCTCGCCATTGCGTTGGCTCTTCATATCATGAGGTTGGGTGGCTGCAAGGTGTTGGTTAATTTAGGGAATCCGCTTTGATTATAAATCTTGATGGACGGCTGATGAGTTTTCTGTATGTCTGTTTTTGTTTTGGATAAGAGAGGATTTATTGAATTGTAACCATGCTCTTACATTGGTAAAGTTATAGATGTAATAGCCCAATCCCACCGCTAGCCGATATTGTTCTCTTTGAGCTTTCCCTTTCAAACTTTCCCTCAAGGTTTTTAAAACGCGTCTGCTACGGAGAGGTTTCCACACTCTTGTAAAGAATGCTTTGTTCTCCTCTCCAACCGATGTGCGATCTCACAATCCACCTCCCTTCTGGGCCAGCGTCCTCGTTGGCACTTGTTCCCTTCTCCGATTGATGTGGGACTCCCCAATCCACCCCCCTAGCCTCAATGTCCTTACCGACACACTGCCTCGTGTTCACCCCCTTTTGGGTCTCAACCTCCTCGCTGGCACATCGCTTAGTGCCTGCCTCTGATACTATTTGTAATAGCTCAGGCCCACTGTTAGCAGAAATTGTCTTCTTTGGGCTTTTCCTTTCGAGTTTTTCCTCAAGGTTTCTAAAACGCGTCTGCTTGGGAGAGATTTCCGCACCTTTAGAAAGAATGTTTCATTCTCCTTCCCAACCGATGTGAGATCTCACAATACACGTTAGACCCAAGAAGAGGGGAGAAGATCTCAACCTTCATACCTTAGTAACTTATTTGACTGTTCTTACTTAGATTCTTACTTCCCTTGTGCCTCAATATTGAAGCACCTTACTCAATTAGCTGCAACTAAGTATACATTTATAGTATATTGCCATGAAATGACTGCCATCCTTGAGTTTGTTGATTCTTCAGGAAAAAGGCAGTAGCAGTCCGTTGCCGAAATTCGGCGAATGGGATGTGAACGACCCTGCATCTGCTGAGGGATTCACAGTAATCTTCAATAAAGCCAGGAATGAGAAAAAGGCTGGTGGCATGCCTGACTCTCCAGCAAAGGATGACCCCACATACAAGAATGGTTCTGTTCTTGGAAAGCCTCAACCTGTAAGTTCTTTGCAGCCAAATGTTCTTGAATCTCTTCGTTTAGTTTTGTGAGTACTGAGGATCAGAAGCTATGCTTGTTTAGACCTATTGGCAAATGTGTATTTCTAGATTCCACATCCTCTGCTAACTCCACTCTTAGCATATTCTAGTAGTCATTGGAGCTGAGATATAAATTTAACGTGAGATTCCACATTGGTTGGAGAGGGGAATGAAATATTTCTTATAAAGATGTAGAAACCTCTCCCTAGCAGACGCGTTTTAAAACCGTGAGGCTCATGGCGATACGTAATGGGTTAAAGTGGACAATATCTACTAGCGGTGAGCTTGAGTTGTTACAAATGGTATCAGAGCCCGACACTAGGTGGTGTGCTAGTGAGGACGTTGGGCTCTCAAGGGGATGGATTGTGAGATCCCACATCGGTTGAAAAGGGAAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTGCCTAGTAGACTGAGTTTTAAAACATTGAGGGGAAACCCATAAGAGAAAGCCCAAAGTACATTTAAATGACCAAATTCTCTCGTTTTGGCACCTAAACCTTTTGCATTTACGGTTTATTTAGTGTAAATTATTACTGATAGAGCCATTGTTGTAAATACACCATGTTTTTCAAACACCTTTCAATTCATATATTACAAGTAGAACACTGCTATTTTCTCATGATTTCACGTTGGGATTTGCAGAAAAAATGGTTTTGCTGCTTGCAAGCTGCAGAATCGTGAGGCTTTTCGGATCGATGAACGGAGTTCAGCAGAATCAACACACTGAATTTTATCTCTTGAAGATTGAAGCTGCTGCATTTAGAATGTGTTTATGGATAATGCTGAACTCCTTGGGGTTTGGGGATGAAGATGATTAGTCATCATTGTGTTGTTATGTTGTTCCTTCTGCATAAATGGCAACTATTAGAGATTGTTGCTTATCATCTTCCCTCCTCCCTGCTGCCCTCTTGTTGTGAAATGATGCTCTGATCCTCTTTGTTCACACTTTTTCTTGCCTTAATGATTTCAAATGTCTCTCTTTCTCTGTGATCTTAAATTTTATGCAA

mRNA sequence

CTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAGACTAAGGGCCCCGCTTTCCACTTCTATAATATCCCATTACCCAACTCCTTCTCTTGTCCTACTCCCACGCCCCCTCTTCTCTCTCAATCAACCATACACTCCTTTACCTTCAAAATCCATCATCGCCACCATCTTCTCGTCGAACCCCACTCATGGCGATGTTTCTGATATTCGATTGGGCAATTCTCGATTGTTTCGAGATTGTCTCGCCATTGCGTTGGCTCTTCATATCATGAGGTTGGGTGGCTGCAAGGAAAAAGGCAGTAGCAGTCCGTTGCCGAAATTCGGCGAATGGGATGTGAACGACCCTGCATCTGCTGAGGGATTCACAGTAATCTTCAATAAAGCCAGGAATGAGAAAAAGGCTGGTGGCATGCCTGACTCTCCAGCAAAGGATGACCCCACATACAAGAATGGTTCTGTTCTTGGAAAGCCTCAACCTGTAAGTTCTTTGCAGCCAAATGTTCTTGAATCTCTTCGTTTAGTTTTAAAAAATGGTTTTGCTGCTTGCAAGCTGCAGAATCGTGAGGCTTTTCGGATCGATGAACGGAGTTCAGCAGAATCAACACACTGAATTTTATCTCTTGAAGATTGAAGCTGCTGCATTTAGAATGTGTTTATGGATAATGCTGAACTCCTTGGGGTTTGGGGATGAAGATGATTAGTCATCATTGTGTTGTTATGTTGTTCCTTCTGCATAAATGGCAACTATTAGAGATTGTTGCTTATCATCTTCCCTCCTCCCTGCTGCCCTCTTGTTGTGAAATGATGCTCTGATCCTCTTTGTTCACACTTTTTCTTGCCTTAATGATTTCAAATGTCTCTCTTTCTCTGTGATCTTAAATTTTATGCAA

Coding sequence (CDS)

CTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAGACTAAGGGCCCCGCTTTCCACTTCTATAATATCCCATTACCCAACTCCTTCTCTTGTCCTACTCCCACGCCCCCTCTTCTCTCTCAATCAACCATACACTCCTTTACCTTCAAAATCCATCATCGCCACCATCTTCTCGTCGAACCCCACTCATGGCGATGTTTCTGATATTCGATTGGGCAATTCTCGATTGTTTCGAGATTGTCTCGCCATTGCGTTGGCTCTTCATATCATGAGGTTGGGTGGCTGCAAGGAAAAAGGCAGTAGCAGTCCGTTGCCGAAATTCGGCGAATGGGATGTGAACGACCCTGCATCTGCTGAGGGATTCACAGTAATCTTCAATAAAGCCAGGAATGAGAAAAAGGCTGGTGGCATGCCTGACTCTCCAGCAAAGGATGACCCCACATACAAGAATGGTTCTGTTCTTGGAAAGCCTCAACCTGTAAGTTCTTTGCAGCCAAATGTTCTTGAATCTCTTCGTTTAGTTTTAAAAAATGGTTTTGCTGCTTGCAAGCTGCAGAATCGTGAGGCTTTTCGGATCGATGAACGGAGTTCAGCAGAATCAACACACTGA

Protein sequence

LEVADTVKRPSKLRRLRAPLSTSIISHYPTPSLVLLPRPLFSLNQPYTPLPSKSIIATIFSSNPTHGDVSDIRLGNSRLFRDCLAIALALHIMRLGGCKEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSSLQPNVLESLRLVLKNGFAACKLQNREAFRIDERSSAESTH

Homology

[Close]

BLAST of Carg16108 vs. NCBI nr
Match: XP_022943908.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022985731.1 RPM1-interacting protein 4-like [Cucurbita maxima] >XP_023512852.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 100 EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK 159
           EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK
Sbjct: 3   EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK 62

Query: 160 PQP 163
           PQP
Sbjct: 63  PQP 65

[Close]

BLAST of Carg16108 vs. NCBI nr
Match: XP_022140725.1 (RPM1-interacting protein 4 [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 9.0e-26
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 100 EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK 159
           EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDPTYK+G+VLGK
Sbjct: 3   EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGK 62

Query: 160 PQ 162
           PQ
Sbjct: 63  PQ 64

[Close]

BLAST of Carg16108 vs. NCBI nr
Match: XP_022947540.1 (uncharacterized protein LOC111451376 isoform X2 [Cucurbita moschata] >XP_022971145.1 uncharacterized protein LOC111469905 isoform X2 [Cucurbita maxima] >XP_023534545.1 uncharacterized protein LOC111796087 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-25
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 99  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLG 158
           +EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDP+YK+G+VLG
Sbjct: 2   QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVLG 61

Query: 159 KPQP 163
           K QP
Sbjct: 62  KSQP 65

[Close]

BLAST of Carg16108 vs. NCBI nr
Match: XP_022947539.1 (uncharacterized protein LOC111451376 isoform X1 [Cucurbita moschata] >XP_022971144.1 uncharacterized protein LOC111469905 isoform X1 [Cucurbita maxima] >XP_023534543.1 uncharacterized protein LOC111796087 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 4.5e-25
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 100 EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK 159
           EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDP+YK+G+VLGK
Sbjct: 3   EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPSYKHGAVLGK 62

Query: 160 PQP 163
            QP
Sbjct: 63  SQP 65

[Close]

BLAST of Carg16108 vs. NCBI nr
Match: XP_008464153.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 99  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLG 158
           +EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKD+  +KNGSVLG
Sbjct: 3   EEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLG 62

Query: 159 KPQP 163
           K QP
Sbjct: 63  KSQP 66

[Close]

BLAST of Carg16108 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-20
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 106 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY-KNGSVLGKP 161
           PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GG  DSP KD+P Y KNG VL KP
Sbjct: 7   PLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEKP 62

[Close]

BLAST of Carg16108 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-17
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 99  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSV 158
           ++KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKK GG P SP K    +    G  
Sbjct: 18  RDKG--RPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGD 77

Query: 159 LGKPQPVSSL 167
             KPQPV  +
Sbjct: 78  PSKPQPVKKM 85

[Close]

BLAST of Carg16108 vs. TAIR10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-11
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 106 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGG--------MPDSPAKDDPTYK 153
           PLPKFGEWDVNDPASAEGFTVIF KAR++KK             ++ ++D+PT K
Sbjct: 14  PLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEPTKK 68

[Close]

BLAST of Carg16108 vs. TAIR10
Match: AT4G35655.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 106 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAG 139
           PLPKFGEWDVNDPA+AEGFTVIF+KA  +KK G
Sbjct: 9   PLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTG 41

[Close]

BLAST of Carg16108 vs. TAIR10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-10
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 101 KGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK----AGGMPDS 144
           +    PLPKFGEWDVN+PASAEGFTVIF+KA +EKK    +G  P+S
Sbjct: 3   ENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49

[Close]

BLAST of Carg16108 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-15
Identity = 41/59 (69.49%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 106 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQP 163
           PLPKFGEWDVNDPASAEGFTVIFNKAR+EKK GG P SP K    +    G    KPQP
Sbjct: 7   PLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQP 65

[Close]

BLAST of Carg16108 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.6e-05
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 107 LPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKN 154
           +PKFG+WD N+P+SA+G+T IFNK R E+ +G      ++  PT+++
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSR-TPTHQS 193

[Close]

BLAST of Carg16108 vs. TrEMBL
Match: tr|A0A1S3CKV9|A0A1S3CKV9_CUCME (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502102 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 99  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLG 158
           +EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKD+  +KNGSVLG
Sbjct: 3   EEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLG 62

Query: 159 KPQP 163
           K QP
Sbjct: 63  KSQP 66

[Close]

BLAST of Carg16108 vs. TrEMBL
Match: tr|A0A1S3CKU3|A0A1S3CKU3_CUCME (RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502102 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 100 EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK 159
           EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKD+  +KNGSVLGK
Sbjct: 3   EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLGK 62

Query: 160 PQP 163
            QP
Sbjct: 63  SQP 65

[Close]

BLAST of Carg16108 vs. TrEMBL
Match: tr|A0A0A0KCQ1|A0A0A0KCQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G113510 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 100 EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK 159
           EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKD+  +KNGSVLGK
Sbjct: 3   EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLGK 62

Query: 160 PQP 163
            QP
Sbjct: 63  SQP 65

[Close]

BLAST of Carg16108 vs. TrEMBL
Match: tr|A0A061DL47|A0A061DL47_THECC (RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_002427 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 106 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSS 165
           PLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG  DSP + DPTYK G+VLGKPQ +  
Sbjct: 7   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKVDSPGRKDPTYKQGAVLGKPQSICK 66

Query: 166 LQPNVLESLRLVLKNGFAACKLQ 189
           L      S ++VL     +C+L+
Sbjct: 67  LILVSSGSEKMVLLYTSCSCRLK 89

[Close]

BLAST of Carg16108 vs. TrEMBL
Match: tr|V4UFJ1|V4UFJ1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018013mg PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 100 EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGK 159
           EKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG PDSP KDD  +K+G+VLGK
Sbjct: 3   EKG--GPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGK 62

Query: 160 PQ 162
           PQ
Sbjct: 63  PQ 62

The following BLAST results are available for this feature:

BLAST of Carg16108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943908.1	3.3e-28	100.00	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022985731.1 RPM1-intera...	[more]
XP_022140725.1	9.0e-26	93.55	RPM1-interacting protein 4 [Momordica charantia]	[more]
XP_022947540.1	3.4e-25	89.06	uncharacterized protein LOC111451376 isoform X2 [Cucurbita moschata] >XP_0229711...	[more]
XP_022947539.1	4.5e-25	90.48	uncharacterized protein LOC111451376 isoform X1 [Cucurbita moschata] >XP_0229711...	[more]
XP_008464153.1	1.7e-24	89.06	PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]	[more]

BLAST of Carg16108 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04410.1	2.4e-20	82.14	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	2.4e-17	62.86	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	7.6e-11	58.18	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT4G35655.1	2.9e-10	81.82	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	3.8e-10	63.83	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Carg16108 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22633\|NOI4_ARATH	3.7e-15	69.49	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
sp\|Q8GYN5\|RIN4_ARATH	4.6e-05	44.68	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of Carg16108 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKV9\|A0A1S3CKV9_CUCME	1.1e-24	89.06	RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502102 PE...	[more]
tr\|A0A1S3CKU3\|A0A1S3CKU3_CUCME	1.5e-24	90.48	RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502102 PE...	[more]
tr\|A0A0A0KCQ1\|A0A0A0KCQ1_CUCSA	1.5e-24	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G113510 PE=4 SV=1	[more]
tr\|A0A061DL47\|A0A061DL47_THECC	7.5e-21	65.06	RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao OX...	[more]
tr\|V4UFJ1\|V4UFJ1_9ROSI	3.7e-20	82.26	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018013mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16108-RA	Carg16108-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 104..137 e-value: 3.7E-20 score: 70.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..163
None	No IPR available	PANTHER	PTHR33159:SF2	RPM1-INTERACTING PROTEIN 4 RIN4 FAMILY PROTEIN	coord: 101..164
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 101..164

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16108	Cla004472	Watermelon (97103) v1	carwmB0331
Carg16108	Csa6G113510	Cucumber (Chinese Long) v2	carcuB0378
Carg16108	MELO3C025943	Melon (DHL92) v3.5.1	carmeB0350
Carg16108	ClCG02G009120	Watermelon (Charleston Gray)	carwcgB0340
Carg16108	ClCG10G004410	Watermelon (Charleston Gray)	carwcgB0334
Carg16108	CSPI06G09310	Wild cucumber (PI 183967)	carcpiB0381
Carg16108	Cucsa.120210	Cucumber (Gy14) v1	carcgyB0408
Carg16108	Cucsa.042110	Cucumber (Gy14) v1	carcgyB0404
Carg16108	CmaCh02G002370	Cucurbita maxima (Rimu)	carcmaB0487
Carg16108	CmaCh20G006890	Cucurbita maxima (Rimu)	carcmaB0486
Carg16108	CmoCh02G002400	Cucurbita moschata (Rifu)	carcmoB0474
Carg16108	Lsi10G000390	Bottle gourd (USVL1VR-Ls)	carlsiB315
Carg16108	Cp4.1LG05g14010	Cucurbita pepo (Zucchini)	carcpeB0489
Carg16108	Cp4.1LG16g03910	Cucurbita pepo (Zucchini)	carcpeB0485
Carg16108	CsGy6G009380	Cucumber (Gy14) v2	carcgybB0357
Carg16108	MELO3C025943.2	Melon (DHL92) v3.6.1	carmedB0356
Carg16108	CsaV3_6G009710	Cucumber (Chinese Long) v3	carcucB0382
Carg16108	Cla97C10G188830	Watermelon (97103) v2	carwmbB0357
Carg16108	Cla97C02G035550	Watermelon (97103) v2	carwmbB0363
Carg16108	Bhi11G000371	Wax gourd	carwgoB0428
Carg16108	Bhi10G001005	Wax gourd	carwgoB0433

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16108	Watermelon (97103) v2	carwmbB0358
Carg16108	Wax gourd	carwgoB0429
Carg16108	Silver-seed gourd	carcarB232
Carg16108	Silver-seed gourd	carcarB372
Carg16108	Silver-seed gourd	carcarB378
Carg16108	Cucumber (Gy14) v2	carcgybB0361
Carg16108	Cucumber (Gy14) v1	carcgyB0405
Carg16108	Cucurbita maxima (Rimu)	carcmaB0483
Carg16108	Cucurbita maxima (Rimu)	carcmaB0484
Carg16108	Cucurbita moschata (Rifu)	carcmoB0470
Carg16108	Cucurbita moschata (Rifu)	carcmoB0471
Carg16108	Cucurbita moschata (Rifu)	carcmoB0473
Carg16108	Cucurbita pepo (Zucchini)	carcpeB0484
Carg16108	Cucurbita pepo (Zucchini)	carcpeB0487
Carg16108	Wild cucumber (PI 183967)	carcpiB0387
Carg16108	Cucumber (Chinese Long) v2	carcuB0384
Carg16108	Cucumber (Chinese Long) v3	carcucB0386
Carg16108	Bottle gourd (USVL1VR-Ls)	carlsiB316
Carg16108	Watermelon (Charleston Gray)	carwcgB0336
Carg16108	Watermelon (97103) v1	carwmB0334