Carg15965 (gene) Silver-seed gourd

Overview
NameCarg15965
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription termination factor like
LocationCucurbita_argyrosperma_scaffold_080 : 867943 .. 869103 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAATTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATCCCAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCACTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCTCGGATTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAAGTCACGAAGATTATTTCCAAGGCTCCGAAAATCTTGATGAGAAGCGTTGATGAACATCTGGTTCCTGCTTTTGATTTTTTGAAAGGTTATCTTGGATCTAATGAGCGAACCATCGCATCAATCAAACGCTTTCCGAGTATCATTGCGGATGTTCACCAAAAACAATTGAACGGATCTGTTAGAATGTTGCTCGACGCCGGCGTGCCTGAGGCGCGTGTTATGTTTTTTCTTTTTTACCAGCCGAGAATGTTCACTATGACTCTAGACAGGTTTAGGGAGATTTTGGAAGATGTGAAGAAAATGGGGTTTGATCCATCGAAATCTAGCTTTGTTCAAGCTGTTTTTGCTATACGAGCAATGAGCAAATCGACATGGGTACGGAAGCTTGGTATTTACAAGAGGTGGGGTTTATCTGAAGAACAGATTCTTGCTGCATTTAGGAGCCATCCATGGTGTATGACATTATCAGAGGAAAAAATTATGTTGGCAATGGATTTCTTTGTCAACAAATTAGGCTGGGAAACTGCAGCGATTGTCAGGAGTCCTTTGCTGCTTTCATTTAGCTTAAAAAAGAGAACAATTCCAAGAGCTTCAGTACTGCTGTTTCTGTTTCAGAAAGGTTTGACTAAGAAAAAAACCATGTTGTTGGTAAAACCATATATGTACACTGAAACTCAGTTCTTGCAGAAGTTTGTTCATCCTCATCTGAAAGAGGCTCCTCAGCTATCGAAGCTGTATCGTGAAAATGTGGATGGTGGGATAATCAATTATGAAATTTGA

mRNA sequence

ATGTCTAATTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATCCCAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCACTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCTCGGATTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAAGTCACGAAGATTATTTCCAAGGCTCCGAAAATCTTGATGAGAAGCGTTGATGAACATCTGGTTCCTGCTTTTGATTTTTTGAAAGGTTATCTTGGATCTAATGAGCGAACCATCGCATCAATCAAACGCTTTCCGAGTATCATTGCGGATGTTCACCAAAAACAATTGAACGGATCTGTTAGAATGTTGCTCGACGCCGGCGTGCCTGAGGCGCGTGTTATGTTTTTTCTTTTTTACCAGCCGAGAATGTTCACTATGACTCTAGACAGGTTTAGGGAGATTTTGGAAGATGTGAAGAAAATGGGGTTTGATCCATCGAAATCTAGCTTTGTTCAAGCTGTTTTTGCTATACGAGCAATGAGCAAATCGACATGGGTACGGAAGCTTGGTATTTACAAGAGGTGGGGTTTATCTGAAGAACAGATTCTTGCTGCATTTAGGAGCCATCCATGGTGTATGACATTATCAGAGGAAAAAATTATGTTGGCAATGGATTTCTTTGTCAACAAATTAGGCTGGGAAACTGCAGCGATTGTCAGGAGTCCTTTGCTGCTTTCATTTAGCTTAAAAAAGAGAACAATTCCAAGAGCTTCAGTACTGCTGTTTCTGTTTCAGAAAGGTTTGACTAAGAAAAAAACCATGTTGTTGGTAAAACCATATATGTACACTGAAACTCAGTTCTTGCAGAAGTTTGTTCATCCTCATCTGAAAGAGGCTCCTCAGCTATCGAAGCTGTATCGTGAAAATGTGGATGGTGGGATAATCAATTATGAAATTTGA

Coding sequence (CDS)

ATGTCTAATTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATCCCAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCACTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCTCGGATTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAAGTCACGAAGATTATTTCCAAGGCTCCGAAAATCTTGATGAGAAGCGTTGATGAACATCTGGTTCCTGCTTTTGATTTTTTGAAAGGTTATCTTGGATCTAATGAGCGAACCATCGCATCAATCAAACGCTTTCCGAGTATCATTGCGGATGTTCACCAAAAACAATTGAACGGATCTGTTAGAATGTTGCTCGACGCCGGCGTGCCTGAGGCGCGTGTTATGTTTTTTCTTTTTTACCAGCCGAGAATGTTCACTATGACTCTAGACAGGTTTAGGGAGATTTTGGAAGATGTGAAGAAAATGGGGTTTGATCCATCGAAATCTAGCTTTGTTCAAGCTGTTTTTGCTATACGAGCAATGAGCAAATCGACATGGGTACGGAAGCTTGGTATTTACAAGAGGTGGGGTTTATCTGAAGAACAGATTCTTGCTGCATTTAGGAGCCATCCATGGTGTATGACATTATCAGAGGAAAAAATTATGTTGGCAATGGATTTCTTTGTCAACAAATTAGGCTGGGAAACTGCAGCGATTGTCAGGAGTCCTTTGCTGCTTTCATTTAGCTTAAAAAAGAGAACAATTCCAAGAGCTTCAGTACTGCTGTTTCTGTTTCAGAAAGGTTTGACTAAGAAAAAAACCATGTTGTTGGTAAAACCATATATGTACACTGAAACTCAGTTCTTGCAGAAGTTTGTTCATCCTCATCTGAAAGAGGCTCCTCAGCTATCGAAGCTGTATCGTGAAAATGTGGATGGTGGGATAATCAATTATGAAATTTGA

Protein sequence

MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLEFLYTRGASSSEVTKIISKAPKILMRSVDEHLVPAFDFLKGYLGSNERTIASIKRFPSIIADVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKFVHPHLKEAPQLSKLYRENVDGGIINYEI
Homology
[Close]
BLAST of Carg15965 vs. NCBI nr
Match: XP_022930344.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 607.8 bits (1566), Expect = 2.5e-170
Identity = 381/386 (98.70%), Postives = 384/386 (99.48%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA 60
           MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA
Sbjct: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA 60

Query: 61  SSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXXX 120
           SSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXXX
Sbjct: 61  SSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVHQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAD+HQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADIHQ 180

Query: 181 KQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQA 240
           KQLNGSVRMLLDAGVPEARV+FFLFYQPRMFTM LDRFREILEDVKKMGFDPSKSSFVQA
Sbjct: 181 KQLNGSVRMLLDAGVPEARVVFFLFYQPRMFTMALDRFREILEDVKKMGFDPSKSSFVQA 240

Query: 241 VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW 300
           VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW
Sbjct: 241 VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW 300

Query: 301 ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKFVH 360
           ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTM LVKPYMYTETQFLQKFVH
Sbjct: 301 ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTM-LVKPYMYTETQFLQKFVH 360

Query: 361 PHLKEAPQLSKLYRENVDGGIINYEI 387
           PHLKEAPQLSKLYRENVDGGII+YEI
Sbjct: 361 PHLKEAPQLSKLYRENVDGGIIDYEI 385

[Close]
BLAST of Carg15965 vs. NCBI nr
Match: XP_023514950.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514951.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 585.1 bits (1507), Expect = 1.7e-163
Identity = 371/386 (96.11%), Postives = 376/386 (97.41%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA 60
           MS FLCKTLLQVRHLTTISPY KLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA
Sbjct: 1   MSKFLCKTLLQVRHLTTISPYSKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA 60

Query: 61  SSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXXX 120
           SSASKLVSF SPEKPDLVISFFKNHGFSIANISFIIWKYPR+LLSNPNGTLLPKLXXXXX
Sbjct: 61  SSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRVLLSNPNGTLLPKLXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVHQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAD+HQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADIHQ 180

Query: 181 KQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQA 240
           KQL+GSVRMLLDAGVPEARVMFFLFYQPRMFTM LDRFREILEDVKKMGFDPSKSSFVQA
Sbjct: 181 KQLSGSVRMLLDAGVPEARVMFFLFYQPRMFTMALDRFREILEDVKKMGFDPSKSSFVQA 240

Query: 241 VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW 300
           VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW
Sbjct: 241 VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW 300

Query: 301 ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKFVH 360
           ETAAIVRSPLLLS SLKKR IPRASVLLFLFQKGLT KKTM LVKPYMYTETQFL+KFV 
Sbjct: 301 ETAAIVRSPLLLSLSLKKRIIPRASVLLFLFQKGLTTKKTM-LVKPYMYTETQFLEKFVR 360

Query: 361 PHLKEAPQLSKLYRENVDGGIINYEI 387
           PHLKEAPQLSKLYRENVD GII+YEI
Sbjct: 361 PHLKEAPQLSKLYRENVDRGIIDYEI 385

[Close]
BLAST of Carg15965 vs. NCBI nr
Match: XP_022930343.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 573.9 bits (1478), Expect = 4.0e-160
Identity = 366/386 (94.82%), Postives = 374/386 (96.89%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA 60
           MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA
Sbjct: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA 60

Query: 61  SSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXXX 120
           SSASKLVSFTSPEKPDLVISFFKNHGFS A+IS II KYPR+LLSNPNGTLLPKLXXXXX
Sbjct: 61  SSASKLVSFTSPEKPDLVISFFKNHGFSNAHISLIIGKYPRMLLSNPNGTLLPKLXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVHQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+ Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIRQ 180

Query: 181 KQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQA 240
           K L+GSV MLLDAGVPEA VM+FLFYQPRMFTM LDRFREILEDVKKMGFDPSKSSFVQA
Sbjct: 181 KYLSGSVTMLLDAGVPEALVMYFLFYQPRMFTMALDRFREILEDVKKMGFDPSKSSFVQA 240

Query: 241 VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW 300
           V A+R MSKSTWVRKLGI+KRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW
Sbjct: 241 VHAMRGMSKSTWVRKLGIFKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW 300

Query: 301 ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKFVH 360
           ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTM LVKPYMYTETQFLQKFVH
Sbjct: 301 ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTM-LVKPYMYTETQFLQKFVH 360

Query: 361 PHLKEAPQLSKLYRENVDGGIINYEI 387
           PHLKEAPQLSKLYRENVDGGII+YEI
Sbjct: 361 PHLKEAPQLSKLYRENVDGGIIDYEI 385

[Close]
BLAST of Carg15965 vs. NCBI nr
Match: XP_023000245.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 545.4 bits (1404), Expect = 1.5e-151
Identity = 353/381 (92.65%), Postives = 360/381 (94.49%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESA 60
           MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTV+SDSHSFTVSYLINSCSLSPESA
Sbjct: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVSSDSHSFTVSYLINSCSLSPESA 60

Query: 61  SSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXXX 120
           SSASKLVSF SPEKPDLVISFFKNHGFSIA+ISFII KYPRILLSNPNG LLP+LXXXXX
Sbjct: 61  SSASKLVSFISPEKPDLVISFFKNHGFSIAHISFIIGKYPRILLSNPNGALLPRLXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVHQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 KQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQA 240
               GSVRMLLDAGVPEA VM+FLFYQPRMFTM LDRFREILEDVKKMGFDPSKSSF+QA
Sbjct: 181 XXXXGSVRMLLDAGVPEAHVMYFLFYQPRMFTMALDRFREILEDVKKMGFDPSKSSFIQA 240

Query: 241 VFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLGW 300
           V AIR MSKSTWVRKLGIYKRWGLSEE+ILAAFRSHPWCMTLSEEKIMLAMDFFV KLGW
Sbjct: 241 VHAIRGMSKSTWVRKLGIYKRWGLSEEEILAAFRSHPWCMTLSEEKIMLAMDFFVKKLGW 300

Query: 301 ETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKFVH 360
           ETAAIVRSP+LLSFSLKKRTIPRASVLLFLFQKGLT KKTM LVKPYMYTETQFLQKFV 
Sbjct: 301 ETAAIVRSPVLLSFSLKKRTIPRASVLLFLFQKGLTTKKTM-LVKPYMYTETQFLQKFVR 360

Query: 361 PHLKEAPQLSKLYRENVDGGI 382
           PHLKEAPQLSKLYR NVDGGI
Sbjct: 361 PHLKEAPQLSKLYRINVDGGI 380

[Close]
BLAST of Carg15965 vs. NCBI nr
Match: XP_022138367.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Momordica charantia])

HSP 1 Score: 484.6 bits (1246), Expect = 3.2e-133
Identity = 321/382 (84.03%), Postives = 342/382 (89.53%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVA-SDSHSFTVSYLINSCSLSPES 60
           MSNFLCKTL++VRHL T SPYP LRCVQ LH +Y+T A SDSHSFTVSYL+NSCS SPES
Sbjct: 1   MSNFLCKTLIRVRHLLTNSPYPNLRCVQFLHVSYTTAAVSDSHSFTVSYLVNSCSFSPES 60

Query: 61  ASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXX 120
           A SASKLVSF + +KPD VISFFKN GFS  +IS II KYPR+LLS+PN TLLPK XXXX
Sbjct: 61  ALSASKLVSFDARDKPDSVISFFKNRGFSNIHISLIIGKYPRLLLSDPNKTLLPKXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVH 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AD  
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIADFR 180

Query: 181 QKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQ 240
           Q QLNGS+RMLLDAGVPEA VM+FL YQPRMFTM LDRFREILEDV KMGFDP KSSFVQ
Sbjct: 181 QNQLNGSIRMLLDAGVPEANVMYFLLYQPRMFTMDLDRFREILEDVMKMGFDPLKSSFVQ 240

Query: 241 AVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLG 300
           AV AIRAMSKSTW RKL IYKRWGLSE++I+AAFRSHPWCMTLSEEKIML MDFFVNKLG
Sbjct: 241 AVHAIRAMSKSTWERKLNIYKRWGLSEKEIIAAFRSHPWCMTLSEEKIMLGMDFFVNKLG 300

Query: 301 WETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKFV 360
           WE+AA+V+SP+LLSFSLKKRTIPRASVLLFLF+KGLTKKK M LVKPYMYTE QFLQKFV
Sbjct: 301 WESAAVVKSPVLLSFSLKKRTIPRASVLLFLFEKGLTKKKFM-LVKPYMYTELQFLQKFV 360

Query: 361 HPHLKEAPQLSKLYRENVDGGI 382
            PHL+E PQLSKLY  NVD GI
Sbjct: 361 RPHLEEVPQLSKLYHVNVDDGI 381

[Close]
BLAST of Carg15965 vs. TAIR10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 169.1 bits (427), Expect = 5.4e-42
Identity = 151/335 (45.07%), Postives = 202/335 (60.30%), Query Frame = 0 

Query: 43  SFTVSYLINSCSLSPESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRI 102
           SFT++YLI+SC LSP+SA+ AS+ +   SPE+P+ V++  ++HGF+ A IS ++ K P +
Sbjct: 69  SFTLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVL 128

Query: 103 LLSNPNGTLLPKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 162
           LL+N    LLPKL                   XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 129 LLANAESVLLPKLSFFLSIGVSKSLLARTLASXXXXXXXXXXXXXXXXXXXXXXXXXXXX 188

Query: 163 XXXXXXXXXXXXXADVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREIL 222
           XXXXXXXXXXXXX              + + GVPE  +   L + P         F+ I 
Sbjct: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIA 248

Query: 223 EDVKKMGFDPSKSSFVQAVFAIRAM-SKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMT 282
           +  ++MGF+P KS+FV A+ A+    +KS W +   +Y+RWG SE+ I+ AF+ HP CM 
Sbjct: 249 KQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMM 308

Query: 283 LSEEKIMLAMDFFVNKLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKK-- 342
           LSE KI   M++FVN++     +I + P++L FSL+KR IPR SV   L   GL K+   
Sbjct: 309 LSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWS 368

Query: 343 -TMLLVKPYMYTETQFLQKFVHPHLKEAPQLSKLY 374
            T LLV      E  FL+K V  + +E P+L  LY
Sbjct: 369 LTSLLVP----VEKVFLEKLVIKYEEELPELMNLY 399

[Close]
BLAST of Carg15965 vs. TAIR10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 152.5 bits (384), Expect = 5.2e-37
Identity = 129/334 (38.62%), Postives = 183/334 (54.79%), Query Frame = 0 

Query: 43  SFTVSYLINSCSLSPESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRI 102
           SFTVSYL++SC LS ESA S S+ V   S +KPD V++ FK+HGF+   I+ +I  +PR+
Sbjct: 56  SFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRV 115

Query: 103 LLSNPNGTLLPKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 162
           L  +P   + PK XXXXXXXXXXXXXXXXXXXXXXXXXXXX                   
Sbjct: 116 LSLSPEDVISPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKRLIPCYDSLKSILVEEE 175

Query: 163 XXXXXXXXXXXXXADVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREIL 222
                        +      ++  V +  + GVP+  + + +   P  F     RF E+L
Sbjct: 176 SVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVL 235

Query: 223 EDVKKMGFDPSKSSFVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTL 282
             V   GFDP K+ FV A+ A    S+S   RK  +++ +G S+E  +AA    P C+T+
Sbjct: 236 NRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTV 295

Query: 283 SEEKIMLAMDFFVNKLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTML 342
           S+EKIM  +++ VN +G +   IV  P++LS S++KR  PR  V+  L  KGL KK+ + 
Sbjct: 296 SDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDIN 355

Query: 343 LVKPYMYTETQFLQKFVHPHLKEAPQLSKLYREN 377
                    ++F+ KFV  +  E PQL + +  N
Sbjct: 356 YFTILKLKSSEFMDKFVLKYQDEMPQLVQPFTSN 389

[Close]
BLAST of Carg15965 vs. TAIR10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-25
Identity = 133/361 (36.84%), Postives = 193/361 (53.46%), Query Frame = 0 

Query: 37  VASDSHSFTVSYLINSCSLSPESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFII 96
           V     SFTVSYL++S  L  + A S S+ VSF   + PD V++  ++HGF+ + IS I+
Sbjct: 46  VGRKGKSFTVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIV 105

Query: 97  WKYPRILLSNPNGTLLPKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 156
             YP++L+++   +L PK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 106 TDYPQLLVADAEKSLAPK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 165

Query: 157 XXXXXXXXXXXXXXXXXXXADVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLD 216
                               ++  K  N SV  L + G+P  +++F L     +     +
Sbjct: 166 ETLLDKSSKSEKSCQPFPQGNLENKIRNLSV--LRELGMPH-KLLFPLLISCDVPVFGKE 225

Query: 217 RFREILEDVKKMGFDPSKSSFVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSH 276
           +F E L+ V +MGFDPS S FV+A+  ++ +S      K+  YKR G   E +   F+  
Sbjct: 226 KFEESLKKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRW 285

Query: 277 PWCMTLSEEKIMLAM-----------------------------------DFFVNKLGWE 336
           P  +T SE+KI+  +                                   +F V K+ W 
Sbjct: 286 PNFLTHSEKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWP 345

Query: 337 TAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKFVHP 363
             A+V +P +L +SL+KRT+PR +V+  L  KGL   +   + + ++ T+  FL ++V  
Sbjct: 346 LKALVSNPAVLGYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKR 402

[Close]
BLAST of Carg15965 vs. TAIR10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 109.0 bits (271), Expect = 6.6e-24
Identity = 132/378 (34.92%), Postives = 195/378 (51.59%), Query Frame = 0 

Query: 37  VASDSHSFTVSYLINSCSLSPESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFII 96
           V    ++FTVSYL++S  L+ + A S S+ VSF     PD V++   +HGF+ + IS II
Sbjct: 46  VGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTII 105

Query: 97  WKYPRILLSNPNGTLLPKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 156
             YP++L+++   +L PK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 106 RDYPQLLIADAEKSLGPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKD 165

Query: 157 XXXXXXXXXXXXXXXXXXXADVHQKQLNGSVR---MLLDAGVPEARVMFFLFYQPRMFTM 216
                                + Q  L   +R   +L + G+P  +++F L         
Sbjct: 166 TLLEKSSKNEKLCH------SLPQGNLENKIRNVSVLRELGMPH-KLLFSLLISDSQPVC 225

Query: 217 TLDRFREILEDVKKMGFDPSKSSFVQAVFAIRAMSKSTWVRKLGIY-------------- 276
             ++F E L+ V +MGFDP+ S FV+A+  I  M++ T   K+ +Y              
Sbjct: 226 GKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSF 285

Query: 277 KRW---------------------GLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKL 336
           K+W                     G S ++     +  P C+ LS E +    +F V K+
Sbjct: 286 KKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKM 345

Query: 337 GWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQKF 375
            W   A+V +P +  +SL+KR +PR +V+  L  KGL + +   +    M T+  FL ++
Sbjct: 346 NWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRY 405

[Close]
BLAST of Carg15965 vs. TAIR10
Match: AT1G62120.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-20
Identity = 87/374 (23.26%), Postives = 149/374 (39.84%), Query Frame = 0 

Query: 32  FNYSTVASD--------SHSFTVSYLINSCSLSPESASSASKLVSFTSPEKPDLVISFFK 91
           F+ S +A+D         H+FTVSYL++S  L+ + A S S  VSF +   PD V+S  +
Sbjct: 37  FSSSAIAADVSSRDGRKGHNFTVSYLVDSLGLATKVAESISMKVSFDNKGNPDSVLSLLR 96

Query: 92  NHGFSIANISFIIWKYPRILLSNPNGTLLPKLXXXXXXXXXXXXXXXXXXXXXXXXXXXX 151
           +HGF+ + IS II  +PR+L+ +   +L PKL                            
Sbjct: 97  SHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKRK 156

Query: 152 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVHQKQLNGSVRMLLDAGVPEARVMFF 211
                                               + ++  ++ +L + GVP+ R++F 
Sbjct: 157 GKSLSRYYDFVKVIIEADKSSKLEKLCHSLPEGSKQENKIR-NLLVLREMGVPQ-RLLFS 216

Query: 212 LFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQAVFAIRAMSKSTWVRKLGIYKRWG 271
           L           ++F+E L+   ++GFDP+ ++FV+A+  +  +S      K    KR G
Sbjct: 217 LLISDAGDVCGKEKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENKFNACKRLG 276

Query: 272 LSEEQILAAFRSHPWCMT-----------------------------------LSEEKIM 331
           L+ + + A F+  P  +T                                        + 
Sbjct: 277 LAVDDVWAMFKKWPNILTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMK 336

Query: 332 LAMDFFVNKLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYM 363
              +F V ++ W   A+   P +L +SL+KRT+PR +V+  L  KGL + +   +     
Sbjct: 337 TKTEFLVTEMNWPLKAVASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESELPPISSVLT 396

[Close]
BLAST of Carg15965 vs. Swiss-Prot
Match: sp|Q9FK23|MTEF8_ARATH (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF8 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 6.6e-05
Identity = 30/140 (21.43%), Postives = 59/140 (42.14%), Query Frame = 0 

Query: 180 QKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSSFVQ 239
           +++L   +  L + G     +  FL   P +  ++ +     L  + K+G+         
Sbjct: 320 ERKLRPRIEFLKECGFDSPGMFKFLSKAPLILALSENNLSHKLGFLVKIGYKHRTKELAF 379

Query: 240 AVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVNKLG 299
           A+ A+   S     R +G+Y  +GLS E ILA    HP  +  +   +   +++ +  +G
Sbjct: 380 AMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMG 439

Query: 300 WETAAIVRSPLLLSFSLKKR 320
            E   ++  P  L + L  R
Sbjct: 440 REVEELLAFPAFLGYKLDSR 459

[Close]
BLAST of Carg15965 vs. TrEMBL
Match: tr|A0A2R6P4C5|A0A2R6P4C5_ACTCH (Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33119 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.4e-67
Identity = 192/382 (50.26%), Postives = 251/382 (65.71%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVAS----DSHSFTVSYLINSCSLS 60
           M  F+CKTL  V   ++ SP   L  +Q   F+ S   +    + HSFTV YLINS   S
Sbjct: 1   MFKFICKTLHHVPR-SSQSPNQNLCFLQIQPFSSSLKTTKNLQNQHSFTVIYLINSFGFS 60

Query: 61  PESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLX 120
           PE A S SK V F SP+KPD V++FFKNHGF+   IS II  +P +LL +P  TLLPK X
Sbjct: 61  PEKALSKSKYVKFESPDKPDFVLAFFKNHGFTQTQISTIITNHPSLLLCDPEKTLLPKXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLQSEEKTITAMKRKCGPVL 180

Query: 181 DVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSS 240
              Q  +  ++ +L + GVP A +   L  QPR F  + DRFR+++E+V+ MGFDP +S+
Sbjct: 181 FGKQTLVTPNIEILRETGVPNANITILLMKQPRAFMTSSDRFRQVVEEVENMGFDPLRSN 240

Query: 241 FVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVN 300
           FV A++A+R M++STW +K+ +YKRWG +E+ IL AF+ HPWCM +SE+KI  AMDF VN
Sbjct: 241 FVMAIYALRTMTRSTWEKKVEVYKRWGWTEDDILEAFKKHPWCMMISEDKISAAMDFLVN 300

Query: 301 KLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQ 360
           K+G + + + ++P+LLSFSLKKR +PR++V   L  KGL K  ++ L    +  E  FL+
Sbjct: 301 KMGAKISLVAQTPVLLSFSLKKRIVPRSAVYQMLLSKGLIKSNSISLTSLLIPPEKWFLE 360

Query: 361 KFVHPHLKEAPQLSKLYRENVD 379
           K V+ H  EAP+L KLY+E +D
Sbjct: 361 KLVNRHKDEAPELLKLYKEKLD 381

[Close]
BLAST of Carg15965 vs. TrEMBL
Match: tr|A0A2R6Q3P9|A0A2R6Q3P9_ACTCH (Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22853 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.4e-65
Identity = 204/381 (53.54%), Postives = 259/381 (67.98%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTV----ASDSHSFTVSYLINSCSLS 60
           M  F+CKTL  VR     SP   L  +Q   F+ S      + + HSFTVSYLINSC  S
Sbjct: 1   MFQFICKTLHHVRSDARASPIHNLCFMQIQLFSSSLKPTKNSPNQHSFTVSYLINSCGFS 60

Query: 61  PESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLX 120
           PE A S SK V F SP+KPD V++FFK HGF+   IS II  +P +LL +P  TLLPK X
Sbjct: 61  PEKALSMSKYVKFESPDKPDSVLAFFKYHGFTQTQISTIIRNHPSLLLCDPEKTLLPKXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKRCGSLLL 180

Query: 181 DVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSS 240
              Q  +  ++ ++ +AGVP + +MF L  QPR+F    D+FR+IL+DV+ MGFDP   +
Sbjct: 181 FDRQPHVIPNIEIMREAGVPNSNIMFLLKNQPRVFITRSDKFRQILKDVETMGFDPLIMT 240

Query: 241 FVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVN 300
           FV AV A+R+M+KSTW +K+ +YK+WG +EE+IL AF+ HP CMT SE+KI   MDF VN
Sbjct: 241 FVSAVHALRSMTKSTWEKKVDVYKKWGWTEEEILVAFKKHPCCMTASEDKINGVMDFLVN 300

Query: 301 KLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQ 360
           K+G E++ +V+  +L+S SL+KR +PR +V   L  KGL +     L+     +E  FL+
Sbjct: 301 KMGLESSLVVKRSILISLSLEKRIVPRCAVYQALLSKGLIQTNGFSLMTMLRTSEKLFLK 360

Query: 361 KFVHPHLKEAPQLSKLYRENV 378
           KFV+ H +EAP+L KLY E +
Sbjct: 361 KFVNYHEEEAPELLKLYNEKL 381

[Close]
BLAST of Carg15965 vs. TrEMBL
Match: tr|A0A2R6P4D3|A0A2R6P4D3_ACTCH (Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33129 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.8e-63
Identity = 185/382 (48.43%), Postives = 246/382 (64.40%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVAS----DSHSFTVSYLINSCSLS 60
           M  F CK    V H  + SP      +Q   F+ S  ++    + HSF V+YLINSC  S
Sbjct: 1   MFKFTCKAFDYV-HRASQSPNHNFCFLQIQAFSSSLKSTQKPPNQHSFAVTYLINSCGFS 60

Query: 61  PESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLX 120
           PE A SASK V F +PEKPD V++FF++HG +   IS +I  +PR+LL +P  TLLPK X
Sbjct: 61  PEKAHSASKYVKFETPEKPDSVLAFFRSHGLTQTQISNVIRTHPRLLLCDPEKTLLPKXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSNLLQSEEKTLAAIKSYSGLLL 180

Query: 181 DVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSS 240
              Q  +  ++  L +AGVP A +MF L  QPR F    DRFR+++++V+ MGF+P + +
Sbjct: 181 FDRQTHVIPNIETLREAGVPNANIMFLLTNQPRAFMTGSDRFRQVVKEVETMGFNPLRIN 240

Query: 241 FVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVN 300
           FV AV A+RAM+KSTW +K+ +Y++WG +E++IL AF+ HPWCMT SE+KI   MDF VN
Sbjct: 241 FVTAVHALRAMAKSTWEKKVDVYRKWGWTEDEILVAFKKHPWCMTASEDKINGVMDFLVN 300

Query: 301 KLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQ 360
           K+G E++ + R P L+S SL+KRT+PR +V   L  KGL     + L+   M +E  FL+
Sbjct: 301 KMGLESSLVARRPKLISLSLEKRTVPRCAVYQVLLSKGLISSNAISLMTLLMTSEKLFLE 360

Query: 361 KFVHPHLKEAPQLSKLYRENVD 379
           K V+ H +EAP+L +LY+  +D
Sbjct: 361 KLVNRHKEEAPELLQLYKGKLD 381

[Close]
BLAST of Carg15965 vs. TrEMBL
Match: tr|A0A2R6P4E0|A0A2R6P4E0_ACTCH (Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33130 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.8e-63
Identity = 148/383 (38.64%), Postives = 210/383 (54.83%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLR-CVQSLHFNYSTVAS-----DSHSFTVSYLINSCS 60
           M  F+CKT   +R  T ++  P    C   +H   S++ S     + HSFTV+YLINSC 
Sbjct: 1   MFKFICKTSHHLRSATRVAQSPTHNLCFCQIHPFSSSLESIKNSPNQHSFTVNYLINSCG 60

Query: 61  LSPESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPK 120
            SPE + SASK V F +P+KPD V+ FF+ H F+   IS II K PR+L+ +P  TLLPK
Sbjct: 61  FSPEKSLSASKYVKFETPDKPDSVLRFFETHEFTKTQISRIIRKLPRLLVCDPESTLLPK 120

Query: 121 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           L                                                           
Sbjct: 121 LEFLKSKGISSTDVAKMVSISPFFMKRSLENKIIPSFILFTSLFRSEEKTITAIKRCPSL 180

Query: 181 XADVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSK 240
                   +  ++  L +A VP A +M+ L  QPR+F  + +RFREI+++V+ MGF+P K
Sbjct: 181 LLHDQHFTVAPNIENLQEANVPIANIMYLLANQPRVFFASSNRFREIVKEVETMGFNPLK 240

Query: 241 SSFVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFF 300
            SFV AV A+R+M+KS W +K  +YK WG +E++IL AFR HPWCMT+SE+KI   M+F+
Sbjct: 241 LSFVTAVHALRSMTKSIWEKKFDVYKNWGWTEDEILKAFRMHPWCMTVSEDKINRVMEFW 300

Query: 301 VNKLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQF 360
           VNK+GW+++ + R P LLS SL+KR +PR +V   +  KGL K K + L++     E  F
Sbjct: 301 VNKMGWKSSLLARRPKLLSQSLEKRIVPRCAVYQIMLSKGLIKSKGISLMRLVEAPEEWF 360

Query: 361 LQKFVHPHLKEAPQLSKLYRENV 378
           L+K V+ H + AP+L KLY+E +
Sbjct: 361 LEKLVNRHEEAAPELLKLYKEKL 383

[Close]
BLAST of Carg15965 vs. TrEMBL
Match: tr|A0A2R6Q3R3|A0A2R6Q3R3_ACTCH (Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22852 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.9e-63
Identity = 190/382 (49.74%), Postives = 246/382 (64.40%), Query Frame = 0 

Query: 1   MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVAS----DSHSFTVSYLINSCSLS 60
           M  F+CK+    R  +  SP   L   Q   F+ S  ++    + HS+ V+YLINSC  S
Sbjct: 1   MFKFMCKSSHHFRFASIASPTHNLYFFQIQPFSSSLESNKNSPNQHSYAVTYLINSCGFS 60

Query: 61  PESASSASKLVSFTSPEKPDLVISFFKNHGFSIANISFIIWKYPRILLSNPNGTLLPKLX 120
           PE A SASK V F +P+KPD V+ FFKNHGF+  +IS I+  +P +LLS+P  TLLPK X
Sbjct: 61  PEKALSASKYVKFETPDKPDSVLEFFKNHGFTQTHISTIVRTFPPVLLSDPEKTLLPKXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQSEERTLAAIKRSDALLL 180

Query: 181 DVHQKQLNGSVRMLLDAGVPEARVMFFLFYQPRMFTMTLDRFREILEDVKKMGFDPSKSS 240
             HQ  +  +V +L +AGV  A + F L  +PR F  + DRFRE++++V+ MGF+PS  +
Sbjct: 181 FDHQTHVTHNVEILREAGVSNANITFSLTNEPRAFMTSSDRFREVVKEVETMGFNPSSIN 240

Query: 241 FVQAVFAIRAMSKSTWVRKLGIYKRWGLSEEQILAAFRSHPWCMTLSEEKIMLAMDFFVN 300
           FV AV   R MSKSTW +K+ IYK+WG SE++IL AF+  PWCM  S++KI   MDF VN
Sbjct: 241 FVLAVQFFRGMSKSTWEKKIEIYKKWGWSEDEILGAFKMRPWCMMASDDKITGVMDFLVN 300

Query: 301 KLGWETAAIVRSPLLLSFSLKKRTIPRASVLLFLFQKGLTKKKTMLLVKPYMYTETQFLQ 360
           K+G + + + R P L+S SL+KR +PR++V   L  KGL K   + L       E  FL+
Sbjct: 301 KMGLDASLVARRPKLISLSLEKRIVPRSAVYQVLLSKGLIKSDGISLATVLEPPEKWFLE 360

Query: 361 KFVHPHLKEAPQLSKLYRENVD 379
           K V+ H +EAP+L KLY+E +D
Sbjct: 361 KIVNRHKEEAPELLKLYQEKLD 382

The following BLAST results are available for this feature:
BLAST of Carg15965 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930344.12.5e-17098.70transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucur... [more]
XP_023514950.11.7e-16396.11transcription termination factor MTERF6, chloroplastic/mitochondrial-like isofor... [more]
XP_022930343.14.0e-16094.82transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucur... [more]
XP_023000245.11.5e-15192.65transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucur... [more]
XP_022138367.13.2e-13384.03transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Momor... [more]
BLAST of Carg15965 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.15.4e-4245.07Mitochondrial transcription termination factor family protein[more]
AT1G21150.15.2e-3738.62Mitochondrial transcription termination factor family protein[more]
AT1G61980.12.1e-2536.84Mitochondrial transcription termination factor family protein[more]
AT1G61970.16.6e-2434.92Mitochondrial transcription termination factor family protein[more]
AT1G62120.11.5e-2023.26Mitochondrial transcription termination factor family protein[more]
BLAST of Carg15965 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FK23|MTEF8_ARATH6.6e-0521.43Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana O... [more]
BLAST of Carg15965 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2R6P4C5|A0A2R6P4C5_ACTCH3.4e-6750.26Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1... [more]
tr|A0A2R6Q3P9|A0A2R6Q3P9_ACTCH9.4e-6553.54Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1... [more]
tr|A0A2R6P4D3|A0A2R6P4D3_ACTCH1.8e-6348.43Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1... [more]
tr|A0A2R6P4E0|A0A2R6P4E0_ACTCH1.8e-6338.64Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1... [more]
tr|A0A2R6Q3R3|A0A2R6Q3R3_ACTCH3.9e-6349.74Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15965-RACarg15965-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 129..161
e-value: 0.0039
score: 26.4
coord: 302..336
e-value: 160.0
score: 10.2
coord: 93..124
e-value: 0.12
score: 21.5
coord: 270..301
e-value: 0.074
score: 22.2
coord: 165..196
e-value: 1900.0
score: 1.7
coord: 201..231
e-value: 1800.0
score: 1.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 79..238
e-value: 7.4E-21
score: 74.3
coord: 179..335
e-value: 9.6E-15
score: 54.3
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 167..372
e-value: 4.1E-18
score: 67.5
NoneNo IPR availablePANTHERPTHR13068:SF45SUBFAMILY NOT NAMEDcoord: 5..377
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 5..377

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15965Cla009320Watermelon (97103) v1carwmB0317
Carg15965Cla021722Watermelon (97103) v1carwmB0316
Carg15965Csa6G198250Cucumber (Chinese Long) v2carcuB0354
Carg15965MELO3C006628Melon (DHL92) v3.5.1carmeB0332
Carg15965ClCG05G005950Watermelon (Charleston Gray)carwcgB0317
Carg15965ClCG06G005290Watermelon (Charleston Gray)carwcgB0318
Carg15965CSPI03G14130Wild cucumber (PI 183967)carcpiB0355
Carg15965Cucsa.253310Cucumber (Gy14) v1carcgyB0383
Carg15965CmaCh06G014840Cucurbita maxima (Rimu)carcmaB0457
Carg15965CmaCh08G012150Cucurbita maxima (Rimu)carcmaB0458
Carg15965CmaCh14G016330Cucurbita maxima (Rimu)carcmaB0453
Carg15965CmoCh08G011880Cucurbita moschata (Rifu)carcmoB0449
Carg15965CmoCh14G016700Cucurbita moschata (Rifu)carcmoB0444
Carg15965Lsi09G014110Bottle gourd (USVL1VR-Ls)carlsiB296
Carg15965Lsi05G015220Bottle gourd (USVL1VR-Ls)carlsiB298
Carg15965CsGy3G014250Cucumber (Gy14) v2carcgybB0333
Carg15965CsGy6G014740Cucumber (Gy14) v2carcgybB0337
Carg15965MELO3C006649.2Melon (DHL92) v3.6.1carmedB0340
Carg15965CsaV3_3G014350Cucumber (Chinese Long) v3carcucB0355
Carg15965Cla97C05G087430Watermelon (97103) v2carwmbB0333
Carg15965Cla97C06G114790Watermelon (97103) v2carwmbB0334
Carg15965Bhi12G001849Wax gourdcarwgoB0410
Carg15965Bhi01G000696Wax gourdcarwgoB0411
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg15965Silver-seed gourdcarcarB080
Carg15965Cucurbita maxima (Rimu)carcmaB0455
Carg15965Cucurbita moschata (Rifu)carcmoB0446
Carg15965Cucurbita pepo (Zucchini)carcpeB0450
Carg15965Cucurbita pepo (Zucchini)carcpeB0452
Carg15965Melon (DHL92) v3.5.1carmeB0327
Carg15965Melon (DHL92) v3.6.1carmedB0336