Carg15647 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15647
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glucan endo-1,3-beta-glucosidase
Location	Cucurbita_argyrosperma_scaffold_081 : 107032 .. 108823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCGCCGGACTCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCTTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGGTAAGCTCTTCTTCCCTCTCCTCCTTGCTTCCTCACCTACACTTCTTTTTCCATCCATTTTACAAGTCCCCATCGTGCCCACGGCCTACACATCCACTAAGTAATTGCACTTTACCTGGGTGCCCCTGGCCCTCACCTTTTGCTTAGCACACAAGTATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTATGCGAATCTGCTCAAACAAAAATTAACCCAATAAACTCTTCTGTGGTAGATGCTAAAAGTGTGCACAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTACTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCTACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTACGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAGTAAGTTTGTAATCTCCTCATTTTTTATATATTATTAATTATAATATAGGCTGTGGAATTTCTTTTAATTAATATATTGAATCTGCTTGTTTTCTTGTGGAACACGGCAGGTTATGATGGGTGCCATTTCGTTTACACGTAGACATGACTATGAAATGGAATTGTTTTATCCACTTTTGAAGACACGTGAGAAACATGTACAGACTAGAAATCTAGAACATAATATCACTCTCCATTTTTTCCCCCACTTTTTTTTTTTATATATAAAATAATTTGGTTGGAATAAATTTATGCATAGATATATGTTTCATAGTTTTAATTTCTTTTTTTATATTATCTTCATTTTGAAACCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTAGATGAGAATTGA

mRNA sequence

ATGGATTTCGCCGGACTCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCTTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGATGCTAAAAGTGTGCACAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTACTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCTACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTACGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAATGAGAATTGA

Coding sequence (CDS)

ATGGATTTCGCCGGACTCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCTTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGATGCTAAAAGTGTGCACAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTACTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCTACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTACGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAATGAGAATTGA

Protein sequence

MDFAGLRRRRLLLLLLLFVSTSTTHFFTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPATPLPPSSPFTYISSPPPPFYYLPPLLPPPTPTYGSPPSFTPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPNEN

Homology

[Close]

BLAST of Carg15647 vs. NCBI nr
Match: XP_022952944.1 (extensin-2-like [Cucurbita moschata])

HSP 1 Score: 231.9 bits (590), Expect = 2.6e-57
Identity = 249/265 (93.96%), Postives = 251/265 (94.72%), Query Frame = 0


Query: 1   MDFAGLRXXXXXXXXXXXXXXXXXXXFTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVDG 60
           MDFAGLRXXXXXXXXXXXXXXXXXXX TPCDA+SVHRRSKKLQLAKYLDVIGQKVSHVDG
Sbjct: 36  MDFAGLRXXXXXXXXXXXXXXXXXXXXTPCDARSVHRRSKKLQLAKYLDVIGQKVSHVDG 95

Query: 61  GTNSQPYVSSPF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GTNSQPYVSSPF  XXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXX
Sbjct: 96  GTNSQPYVSSPFTXXXXXXXXXXXXXXXXXXXXXXLPPSSPFTYISXXXXXXXXXXXXXX 155

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 156 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 215

Query: 181 XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY 240
           XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY
Sbjct: 216 XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY 275

Query: 241 WQRTKVGGGTCEFGGTAMLVTVDPN 264
           WQRTKVGGGTCEFGGTAMLVTVDP+
Sbjct: 276 WQRTKVGGGTCEFGGTAMLVTVDPS 300

[Close]

BLAST of Carg15647 vs. NCBI nr
Match: XP_022969387.1 (36.4 kDa proline-rich protein-like [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 2.2e-56
Identity = 254/265 (95.85%), Postives = 256/265 (96.60%), Query Frame = 0


Query: 1   MDFAGLR-XXXXXXXXXXXXXXXXXXXFTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVD 60
           MDF GLR XXXXXXXXXXXXXXXXXXXFTPCDA+SVHRRSKKLQLAKYLDVIGQKVSHVD
Sbjct: 22  MDFTGLRXXXXXXXXXXXXXXXXXXXXFTPCDARSVHRRSKKLQLAKYLDVIGQKVSHVD 81

Query: 61  GGTNSQPYVSSPF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GGTNSQPYVSSPF XXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXX
Sbjct: 82  GGTNSQPYVSSPFTXXXXXXXXXXXXXXXXXXXXXXXXXXSPFTYIXXXXXXXXXXXXXX 141

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 142 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 201

Query: 181 XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY 240
           XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY
Sbjct: 202 XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY 261

Query: 241 WQRTKVGGGTCEFGGTAMLVTVDPN 264
           WQRTKVGGGTCEFGGTAMLVTVDP+
Sbjct: 262 WQRTKVGGGTCEFGGTAMLVTVDPS 286

[Close]

BLAST of Carg15647 vs. NCBI nr
Match: XP_023511411.1 (36.4 kDa proline-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.6 bits (571), Expect = 4.1e-55
Identity = 248/265 (93.58%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1   MDFAGLR-XXXXXXXXXXXXXXXXXXXFTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVD 60
           MDFAGLR XXXXXXXXXXXXXXXXXXX TPCDA+SV RRSKKLQLAKYLDVIGQKVSHVD
Sbjct: 22  MDFAGLRXXXXXXXXXXXXXXXXXXXXXTPCDARSVERRSKKLQLAKYLDVIGQKVSHVD 81

Query: 61  GGTNSQPYVSSPF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GGTNSQPYVSSPF XXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXX
Sbjct: 82  GGTNSQPYVSSPFTXXXXXXXXXXXXXXXXXXXXXXLPPSSPFTYISXXXXXXXXXXXXX 141

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 142 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 201

Query: 181 XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY 240
           XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY
Sbjct: 202 XXXNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSY 261

Query: 241 WQRTKVGGGTCEFGGTAMLVTVDPN 264
           WQRTKVGGGTCEFGGTAMLVTVDP+
Sbjct: 262 WQRTKVGGGTCEFGGTAMLVTVDPS 286

[Close]

BLAST of Carg15647 vs. NCBI nr
Match: XP_008447077.1 (PREDICTED: extensin-2 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 220/237 (92.83%), Postives = 226/237 (95.36%), Query Frame = 0


Query: 27  FTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFXXXXXXXXXXXXXX 86
           F  CD +SVHR+SKKLQLAKYLDVIG+KVSHVDG TNSQPY     XXXXXXXXXXXXXX
Sbjct: 21  FPQCDGRSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYXXXXXXXXXXXXXXXXXXX 80

Query: 87  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 146
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX
Sbjct: 81  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXX 140

Query: 147 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIALWCVAKPSVPDPIIQEAMNYAC 206
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IALWCVAKPSVPDPIIQEAMNYAC
Sbjct: 141 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALWCVAKPSVPDPIIQEAMNYAC 200

Query: 207 GTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPN 264
           GTVADCD+ILP+GPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDP+
Sbjct: 201 GTVADCDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPS 257

[Close]

BLAST of Carg15647 vs. NCBI nr
Match: XP_022148032.1 (extensin [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 211/243 (86.83%), Postives = 217/243 (89.30%), Query Frame = 0


Query: 27  FTPCDAKSVHRR-----SKKLQLAKYLDVIGQKVSHVDGGTNSQPYV-SSPFXXXXXXXX 86
           FTPCD +SVHRR      KK QLAKYLDVIGQKV HVD  +NSQPYV     XXXXXXXX
Sbjct: 22  FTPCDCRSVHRRRTIHKGKKFQLAKYLDVIGQKVRHVDEASNSQPYVXXXXXXXXXXXXX 81

Query: 87  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 146
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 82  XXXXXXXXXXXXXXXXXXXXXXXXXXXXPFAYMSXXXXXXXXXXXXXXXXXXXXXXXXXX 141

Query: 147 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIALWCVAKPSVPDPIIQE 206
           XX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+IALWCVAKPSVP PIIQE
Sbjct: 142 XXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIALWCVAKPSVPGPIIQE 201

Query: 207 AMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTV 264
           AMNYACGTVADC +ILPNGPCFLPNTL+AHASYAFNSYWQRTKVGGGTCEFGGTAMLVTV
Sbjct: 202 AMNYACGTVADCGSILPNGPCFLPNTLLAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTV 261

[Close]

BLAST of Carg15647 vs. TAIR10
Match: AT1G79480.1 (Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-35
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTK 243
           A WCVAKPSVPDPIIQEAMN+ACG+ ADC +I PNGPCF PNTL AHAS+A+NSYWQRTK
Sbjct: 309 AYWCVAKPSVPDPIIQEAMNFACGSGADCHSIQPNGPCFKPNTLWAHASFAYNSYWQRTK 368

Query: 244 VGGGTCEFGGTAMLVTVDPNEN 266
             GG+C FGGT MLVTVDP+ N
Sbjct: 369 STGGSCTFGGTGMLVTVDPSFN 390

[Close]

BLAST of Carg15647 vs. TAIR10
Match: AT5G67460.1 (O-Glycosyl hydrolases family 17 protein)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 185 LWCVAKPSVPDPIIQEAMNYACGT-VADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTK 244
           LWCVAKPSV    +Q+++++ACG   A+CD I P+G C+ P+T++AHASYAFNSYWQ+TK
Sbjct: 292 LWCVAKPSVAAETLQQSLDFACGQGGANCDEIKPHGICYYPDTVMAHASYAFNSYWQKTK 351

Query: 245 VGGGTCEFGGTAMLVTVDPN 264
             GGTC FGGTAML+T DP+
Sbjct: 352 RNGGTCSFGGTAMLITTDPS 371

[Close]

BLAST of Carg15647 vs. TAIR10
Match: AT4G13600.1 (Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-21
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTK 243
           A+WCVA+  V    +Q A++YAC   ADC  I PNG CFLPNT+ AHASYAFNSY+QR  
Sbjct: 59  AMWCVARFDVTSQALQAALDYACAAGADCAPIQPNGLCFLPNTVQAHASYAFNSYFQRAA 118

Query: 244 VGGGTCEFGGTAMLVTVDPN 264
           +  G+C F GT+ +   DP+
Sbjct: 119 MAPGSCNFAGTSTIAKTDPS 138

[Close]

BLAST of Carg15647 vs. TAIR10
Match: AT2G04910.1 (Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-20
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 186 WCVAKPSVPDPIIQEAMNYACGT-VADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKV 245
           WCVA   +PD +IQ A+++AC T  ADC TI PN PCFLPNT+  HAS  FN+Y+QR K 
Sbjct: 15  WCVADGQIPDNVIQAAVDWACQTGGADCSTIQPNQPCFLPNTVKDHASVVFNNYYQRYKR 74

Query: 246 GGGTCEFGGTAMLVTVDPNE 265
            GG+C F  TA +   DP++
Sbjct: 75  NGGSCNFNSTAFITQTDPSK 94

[Close]

BLAST of Carg15647 vs. TAIR10
Match: AT3G13560.1 (O-Glycosyl hydrolases family 17 protein)

HSP 1 Score: 88.2 bits (217), Expect = 8.3e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGT-VADCDTILPNGPCFLPNTLIAHASYAFNSYWQRT 243
           +++CVAK    D  + + +N+ACG   A+C  I P  PC+LPN + +HAS+AFN Y+Q+ 
Sbjct: 360 SMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKM 419

Query: 244 KVGGGTCEFGGTAMLVTVDPN 264
           K  GGTC+F GTA+  T DP+
Sbjct: 420 KSAGGTCDFDGTAITTTRDPS 440

[Close]

BLAST of Carg15647 vs. Swiss-Prot
Match: sp|Q94CD8|E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-16
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGT-VADCDTILPNGPCFLPNTLIAHASYAFNSYWQRT 243
           +++CVAK    D  + + +N+ACG   A+C  I P  PC+LPN + +HAS+AFN Y+Q+ 
Sbjct: 360 SMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKM 419

Query: 244 KVGGGTCEFGGTAMLVTVDPN 264
           K  GGTC+F GTA+  T DP+
Sbjct: 420 KSAGGTCDFDGTAITTTRDPS 440

[Close]

BLAST of Carg15647 vs. Swiss-Prot
Match: sp|Q9SD84|PDCB2_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.4e-16
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTK 243
           A WCV K  + D ++Q+ ++YACG  ADC+   P G CF P+ + AH +YA NS++Q+  
Sbjct: 19  ASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKG 78

Query: 244 VGGGTCEFGGTAMLVTVDPN 264
               +C F GTA L T DP+
Sbjct: 79  QASESCNFTGTATLTTTDPS 98

[Close]

BLAST of Carg15647 vs. Swiss-Prot
Match: sp|Q94G86|ALL9_OLEEU (Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea OX=4146 GN=OLE9 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 186 WCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVG 245
           WCV KP V D  +   +NYACG   DC  I P G CF PNT+ AHA+Y  N Y+Q     
Sbjct: 372 WCVPKPGVSDDQLTGNINYACGQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQSAGRN 431

Query: 246 GGTCEFGGTAMLVTVDPN 264
              C+F  TA L   +P+
Sbjct: 432 SWNCDFSQTATLTNTNPS 449

[Close]

BLAST of Carg15647 vs. Swiss-Prot
Match: sp|Q9FNQ2|PDCB1_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-13
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTK 243
           A WCV K  + D ++Q  ++YACG  ADC+   P   CF P+ + +H +YA NS++Q+  
Sbjct: 19  ASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKG 78

Query: 244 VGGGTCEFGGTAMLVTVDPN 264
              G+C F GTA     DP+
Sbjct: 79  QSPGSCNFDGTATPTNSDPS 98

[Close]

BLAST of Carg15647 vs. Swiss-Prot
Match: sp|Q9FJU9|E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-13
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 186 WCVAKPSVPDPIIQEAMNYACGT-VADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKV 245
           WC+A     +  ++ A+++ACG    DC  I P+ PCF P+TL++HAS+ FNSY+Q+ + 
Sbjct: 369 WCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRA 428

Query: 246 GGGTCEFGGTAMLVTVDPN 264
               C FGG  + V  DP+
Sbjct: 429 TDVACSFGGAGVKVNKDPS 447

[Close]

BLAST of Carg15647 vs. TrEMBL
Match: tr|A0A1S3BHF5|A0A1S3BHF5_CUCME (extensin-2 OS=Cucumis melo OX=3656 GN=LOC103489624 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.4e-49
Identity = 220/237 (92.83%), Postives = 226/237 (95.36%), Query Frame = 0


Query: 27  FTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFXXXXXXXXXXXXXX 86
           F  CD +SVHR+SKKLQLAKYLDVIG+KVSHVDG TNSQPY     XXXXXXXXXXXXXX
Sbjct: 21  FPQCDGRSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYXXXXXXXXXXXXXXXXXXX 80

Query: 87  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 146
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX
Sbjct: 81  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXX 140

Query: 147 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIALWCVAKPSVPDPIIQEAMNYAC 206
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IALWCVAKPSVPDPIIQEAMNYAC
Sbjct: 141 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALWCVAKPSVPDPIIQEAMNYAC 200

Query: 207 GTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPN 264
           GTVADCD+ILP+GPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDP+
Sbjct: 201 GTVADCDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPS 257

[Close]

BLAST of Carg15647 vs. TrEMBL
Match: tr|A0A0A0K3M1|A0A0A0K3M1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239620 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36
Identity = 204/237 (86.08%), Postives = 211/237 (89.03%), Query Frame = 0


Query: 27  FTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFXXXXXXXXXXXXXX 86
           F  CD +SVHR+SKKLQLAKYLDVIG+KVSHVDG TNSQPY     XXXXXXXXXXXXXX
Sbjct: 21  FPQCDGRSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYXXXXXXXXXXXXXXXXXXX 80

Query: 87  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 146
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 81  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 140

Query: 147 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIALWCVAKPSVPDPIIQEAMNYAC 206
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 QEAMNYAC
Sbjct: 141 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAMNYAC 200

Query: 207 GTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPN 264
           GTVADCD+ILP+GPCF+PNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDP+
Sbjct: 201 GTVADCDSILPSGPCFMPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPS 257

[Close]

BLAST of Carg15647 vs. TrEMBL
Match: tr|B9RRP6|B9RRP6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1425890 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTK 243
           ALWCVAKPSVPDPIIQEAMNYACG+ ADCD++ P+GPCF PNTL AHASYAFNSYWQRTK
Sbjct: 175 ALWCVAKPSVPDPIIQEAMNYACGSGADCDSLQPSGPCFEPNTLFAHASYAFNSYWQRTK 234

Query: 244 VGGGTCEFGGTAMLVTVDPN 264
           V GGTC FGGTAMLVTVDP+
Sbjct: 235 VAGGTCSFGGTAMLVTVDPS 254

[Close]

BLAST of Carg15647 vs. TrEMBL
Match: tr|A0A067KXQ0|A0A067KXQ0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03792 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 184 ALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTK 243
           ALWCVAKPSVPDPIIQEAMNYACG+ ADCD+ILP+G CF PNTL AHASYAFNSYWQRTK
Sbjct: 193 ALWCVAKPSVPDPIIQEAMNYACGSGADCDSILPSGSCFEPNTLFAHASYAFNSYWQRTK 252

Query: 244 VGGGTCEFGGTAMLVTVDPN 264
           V GGTC FGGTAMLVTVDP+
Sbjct: 253 VAGGTCSFGGTAMLVTVDPS 272

[Close]

BLAST of Carg15647 vs. TrEMBL
Match: tr|A0A1Q3BQU4|A0A1Q3BQU4_CEPFO (X8 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13720 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 182 NIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQR 241
           +IALWCVAKPSVPDPIIQEAMNYACG+ ADCD+I P+GPCF P+TL AHASYAFNSYWQR
Sbjct: 176 SIALWCVAKPSVPDPIIQEAMNYACGSGADCDSIQPSGPCFEPDTLFAHASYAFNSYWQR 235

Query: 242 TKVGGGTCEFGGTAMLVTVDPN 264
           TKV GGTC+FGGTA+LVTVDP+
Sbjct: 236 TKVAGGTCDFGGTAILVTVDPS 257

The following BLAST results are available for this feature:

BLAST of Carg15647 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952944.1	2.6e-57	93.96	extensin-2-like [Cucurbita moschata]	[more]
XP_022969387.1	2.2e-56	95.85	36.4 kDa proline-rich protein-like [Cucurbita maxima]	[more]
XP_023511411.1	4.1e-55	93.58	36.4 kDa proline-rich protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_008447077.1	1.3e-48	92.83	PREDICTED: extensin-2 [Cucumis melo]	[more]
XP_022148032.1	1.9e-44	86.83	extensin [Momordica charantia]	[more]

BLAST of Carg15647 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79480.1	4.4e-35	78.05	Carbohydrate-binding X8 domain superfamily protein	[more]
AT5G67460.1	1.3e-26	62.50	O-Glycosyl hydrolases family 17 protein	[more]
AT4G13600.1	1.6e-21	53.75	Carbohydrate-binding X8 domain superfamily protein	[more]
AT2G04910.1	1.0e-20	53.75	Carbohydrate-binding X8 domain superfamily protein	[more]
AT3G13560.1	8.3e-18	46.91	O-Glycosyl hydrolases family 17 protein	[more]

BLAST of Carg15647 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94CD8\|E134_ARATH	1.5e-16	46.91	Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 ...	[more]
sp\|Q9SD84\|PDCB2_ARATH	7.4e-16	43.75	PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2...	[more]
sp\|Q94G86\|ALL9_OLEEU	4.1e-14	44.87	Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea OX=4146 GN=OLE9 PE=1 SV=1	[more]
sp\|Q9FNQ2\|PDCB1_ARATH	1.2e-13	40.00	PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1...	[more]
sp\|Q9FJU9\|E1313_ARATH	1.5e-13	40.51	Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590...	[more]

BLAST of Carg15647 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHF5\|A0A1S3BHF5_CUCME	8.4e-49	92.83	extensin-2 OS=Cucumis melo OX=3656 GN=LOC103489624 PE=4 SV=1	[more]
tr\|A0A0A0K3M1\|A0A0A0K3M1_CUCSA	1.6e-36	86.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239620 PE=4 SV=1	[more]
tr\|B9RRP6\|B9RRP6_RICCO	3.1e-35	86.25	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1425890 PE=4 SV=1	[more]
tr\|A0A067KXQ0\|A0A067KXQ0_JATCU	3.1e-35	87.50	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03792 PE=4 SV=1	[more]
tr\|A0A1Q3BQU4\|A0A1Q3BQU4_CEPFO	3.1e-35	84.15	X8 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CF...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012946	X8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15647-RA	Carg15647-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 139..156 score: 46.67 coord: 117..133 score: 35.29 coord: 90..111 score: 40.91 coord: 64..76 score: 32.31 coord: 160..185 score: 26.92
None	No IPR available	PANTHER	PTHR32227:SF237	CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN	coord: 5..264
None	No IPR available	PANTHER	PTHR32227	FAMILY NOT NAMED	coord: 5..264
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 185..265 e-value: 1.0E-35 score: 134.6
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 185..256 e-value: 6.7E-21 score: 74.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15647	Cla005484	Watermelon (97103) v1	carwmB0528
Carg15647	Csa7G239620	Cucumber (Chinese Long) v2	carcuB0564
Carg15647	MELO3C012594	Melon (DHL92) v3.5.1	carmeB0537
Carg15647	ClCG09G022830	Watermelon (Charleston Gray)	carwcgB0515
Carg15647	CSPI07G11040	Wild cucumber (PI 183967)	carcpiB0570
Carg15647	Cucsa.239920	Cucumber (Gy14) v1	carcgyB0612
Carg15647	CmoCh19G011460	Cucurbita moschata (Rifu)	carcmoB0723
Carg15647	Lsi11G015890	Bottle gourd (USVL1VR-Ls)	carlsiB484
Carg15647	Cp4.1LG15g09070	Cucurbita pepo (Zucchini)	carcpeB0751
Carg15647	MELO3C012594.2	Melon (DHL92) v3.6.1	carmedB0542
Carg15647	CsaV3_7G023040	Cucumber (Chinese Long) v3	carcucB0572
Carg15647	Bhi05G001712	Wax gourd	carwgoB0641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15647	Silver-seed gourd	carcarB358
Carg15647	Cucumber (Gy14) v2	carcgybB0537
Carg15647	Cucumber (Gy14) v2	carcgybB0541
Carg15647	Cucumber (Gy14) v1	carcgyB0610
Carg15647	Cucurbita maxima (Rimu)	carcmaB0745
Carg15647	Cucurbita maxima (Rimu)	carcmaB0746
Carg15647	Cucurbita moschata (Rifu)	carcmoB0724
Carg15647	Cucurbita pepo (Zucchini)	carcpeB0752
Carg15647	Wild cucumber (PI 183967)	carcpiB0566
Carg15647	Cucumber (Chinese Long) v2	carcuB0560
Carg15647	Cucumber (Chinese Long) v3	carcucB0568
Carg15647	Bottle gourd (USVL1VR-Ls)	carlsiB483
Carg15647	Melon (DHL92) v3.5.1	carmeB0536
Carg15647	Melon (DHL92) v3.6.1	carmedB0541
Carg15647	Watermelon (Charleston Gray)	carwcgB0516
Carg15647	Watermelon (97103) v1	carwmB0530
Carg15647	Watermelon (97103) v2	carwmbB0556
Carg15647	Watermelon (97103) v2	carwmbB0559
Carg15647	Wax gourd	carwgoB0643