Carg15647-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTCGCCGGACTCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCTTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGGTAAGCTCTTCTTCCCTCTCCTCCTTGCTTCCTCACCTACACTTCTTTTTCCATCCATTTTACAAGTCCCCATCGTGCCCACGGCCTACACATCCACTAAGTAATTGCACTTTACCTGGGTGCCCCTGGCCCTCACCTTTTGCTTAGCACACAAGTATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTCCATTTTAGCTATTTATTCAACCATTTAGAAAATCCATTGATTAAATAAATAGATAAATATTTTTATGCGAATCTGCTCAAACAAAAATTAACCCAATAAACTCTTCTGTGGTAGATGCTAAAAGTGTGCACAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTACTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCTACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTACGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAGTAAGTTTGTAATCTCCTCATTTTTTATATATTATTAATTATAATATAGGCTGTGGAATTTCTTTTAATTAATATATTGAATCTGCTTGTTTTCTTGTGGAACACGGCAGGTTATGATGGGTGCCATTTCGTTTACACGTAGACATGACTATGAAATGGAATTGTTTTATCCACTTTTGAAGACACGTGAGAAACATGTACAGACTAGAAATCTAGAACATAATATCACTCTCCATTTTTTCCCCCACTTTTTTTTTTTATATATAAAATAATTTGGTTGGAATAAATTTATGCATAGATATATGTTTCATAGTTTTAATTTCTTTTTTTATATTATCTTCATTTTGAAACCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTAGATGAGAATTGA ATGGATTTCGCCGGACTCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCTTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGATGCTAAAAGTGTGCACAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTACTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCTACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTACGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAATGAGAATTGA ATGGATTTCGCCGGACTCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCTTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGATGCTAAAAGTGTGCACAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTACTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCTACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTACGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAATGAGAATTGA MDFAGLRRRRLLLLLLLFVSTSTTHFFTPCDAKSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPATPLPPSSPFTYISSPPPPFYYLPPLLPPPTPTYGSPPSFTPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPNEN
BLAST of Carg15647-RA vs. NCBI nr
Match: XP_022952944.1 (extensin-2-like [Cucurbita moschata]) HSP 1 Score: 231.9 bits (590), Expect = 2.6e-57 Identity = 249/265 (93.96%), Postives = 251/265 (94.72%), Query Frame = 0
BLAST of Carg15647-RA vs. NCBI nr
Match: XP_022969387.1 (36.4 kDa proline-rich protein-like [Cucurbita maxima]) HSP 1 Score: 228.8 bits (582), Expect = 2.2e-56 Identity = 254/265 (95.85%), Postives = 256/265 (96.60%), Query Frame = 0
BLAST of Carg15647-RA vs. NCBI nr
Match: XP_023511411.1 (36.4 kDa proline-rich protein-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 224.6 bits (571), Expect = 4.1e-55 Identity = 248/265 (93.58%), Postives = 250/265 (94.34%), Query Frame = 0
BLAST of Carg15647-RA vs. NCBI nr
Match: XP_008447077.1 (PREDICTED: extensin-2 [Cucumis melo]) HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48 Identity = 220/237 (92.83%), Postives = 226/237 (95.36%), Query Frame = 0
BLAST of Carg15647-RA vs. NCBI nr
Match: XP_022148032.1 (extensin [Momordica charantia]) HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44 Identity = 211/243 (86.83%), Postives = 217/243 (89.30%), Query Frame = 0
BLAST of Carg15647-RA vs. TAIR10
Match: AT1G79480.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 145.6 bits (366), Expect = 4.4e-35 Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0
BLAST of Carg15647-RA vs. TAIR10
Match: AT5G67460.1 (O-Glycosyl hydrolases family 17 protein) HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26 Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0
BLAST of Carg15647-RA vs. TAIR10
Match: AT4G13600.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 100.5 bits (249), Expect = 1.6e-21 Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0
BLAST of Carg15647-RA vs. TAIR10
Match: AT2G04910.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 97.8 bits (242), Expect = 1.0e-20 Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0
BLAST of Carg15647-RA vs. TAIR10
Match: AT3G13560.1 (O-Glycosyl hydrolases family 17 protein) HSP 1 Score: 88.2 bits (217), Expect = 8.3e-18 Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 0
BLAST of Carg15647-RA vs. Swiss-Prot
Match: sp|Q94CD8|E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.5e-16 Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 0
BLAST of Carg15647-RA vs. Swiss-Prot
Match: sp|Q9SD84|PDCB2_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 7.4e-16 Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 0
BLAST of Carg15647-RA vs. Swiss-Prot
Match: sp|Q94G86|ALL9_OLEEU (Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea OX=4146 GN=OLE9 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14 Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Carg15647-RA vs. Swiss-Prot
Match: sp|Q9FNQ2|PDCB1_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.2e-13 Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of Carg15647-RA vs. Swiss-Prot
Match: sp|Q9FJU9|E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.5e-13 Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0
BLAST of Carg15647-RA vs. TrEMBL
Match: tr|A0A1S3BHF5|A0A1S3BHF5_CUCME (extensin-2 OS=Cucumis melo OX=3656 GN=LOC103489624 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 8.4e-49 Identity = 220/237 (92.83%), Postives = 226/237 (95.36%), Query Frame = 0
BLAST of Carg15647-RA vs. TrEMBL
Match: tr|A0A0A0K3M1|A0A0A0K3M1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239620 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36 Identity = 204/237 (86.08%), Postives = 211/237 (89.03%), Query Frame = 0
BLAST of Carg15647-RA vs. TrEMBL
Match: tr|B9RRP6|B9RRP6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1425890 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35 Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0
BLAST of Carg15647-RA vs. TrEMBL
Match: tr|A0A067KXQ0|A0A067KXQ0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03792 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35 Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0
BLAST of Carg15647-RA vs. TrEMBL
Match: tr|A0A1Q3BQU4|A0A1Q3BQU4_CEPFO (X8 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13720 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35 Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|