Carg13153 (gene) Silver-seed gourd

Overview
NameCarg13153
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
LocationCucurbita_argyrosperma_scaffold_101 : 632716 .. 635185 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTGACTAGATTTAAAATCAATAAGACAGTTCCTGTGTTGTTTCCCTTCTCGCGCCGGTTGGCTTGTGTGTTATCGACCCAACCGCATAAAGAACACCACCAGGAGCCGCCATGGCAGCTCCAGGATCAGTTGCTATATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTGGACTCTTCTAAATGTAGAGCTCTGTTCCCTCATTTGTCTCCTCTTGAGTTTGATCTGATGTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAACTTCTTCTACTTTGCTTCTGACTCTTTCAAATTTCGGTTTACCATTCGTTCTTATTGTATATTGATTCTTTTGCTTATTAATTCCAAGTTTTTACCCCCCGCGAGATTGCTTCTGATTCGTTTGATAGATGGGAAGCTCCCGGTGTTGAATTTCGATTTGAATAAGCTTCACATTGAGATAGCTAATGCATTGTTAGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGGACACAGGCTTTTGATTTGTTGATACATGTATACAGCACACAATTCATGAATCTTGGATTTGGTTGCGCTGTTGATGCGTTTTATTTGTTTGCTCAGAAGGGAATTTTTCCGTCATTGAAAACTTGCAATTTTTTATTGAGCTCTTTGGTGAAGGCTAACGAACTTGAAAAATGTTGTGAAGTATTTGAAGTGATGTCCCGTGGTGTTCGTCCAGATGTTTTCTTGTTTACGAATGTAATAAACGCTCTGTGCAAGGGAGGGAAGATGGAAAATGCCATTGAGTTATTCTTGAAAATGGAGAAGTCAGGTATTTCTTCCTAATGTTGTTACTTATAATAGTATTATTCATGGTTTTTGCCAGAATGGGAGATTAGATGATGCCTTCAAGCTCAAGGAGAAGATGATCATAGAAGGGGTAAAGCCAAGTCTTATAACTTATAGTGTGCTTATTAATGGTTTGACAAAACTCGAAAAGTTTGACGAAGCAAATCACGTTTTAAATGAAATGGTAGACACGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAATATCAATGAAGCTCTTAAGATTAGAGATGTGATGATATCCAAAAATATAACTCATACTTCAGTTACTTTATATTCTCTCATGCTAGGGTTTTGCAAGAGTAATCAAATCGAGCGAGCGGAGAATTCTCTAGAGGAGATATTATCTCAAGGGCTATCTATAAACCGTGTTACTTGTTATTCGGTTATCCACTGGTTATGTACAAAGTCGAGATTCGATTCTGCATTGCGATTTACCATGGTGATGTTATCAAAGAACTTCAGGCCTAGTGATCAGCTGTTGACCATATTGGTATGTGGACTCTGTAAGGATGGTAAACATTTAGACGCAACTGAGCTTTGGTTTAGGTTATTTGAGAAAGGGTCTCCAGCGAGTACAGCGACCTCTAACGCTCTAATACATGGACTTTGTGGAGCTGGTAATTTGCAAGAGGCTGTGAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTCCATTGGATCGGATCACATACAATACACTCATTTTAGGTTATTGCAAAGCGGGAAAAGTCGAGGAATGCTTTAGACTTATAGACGAGATGACTAAGCTAGGCATTGAACCAGACATCTACACTTGCAATTTGCTATTGCATGGACTGTGTAATGCAGGAAATTTGGATGGTGCTATTAAGCTTTGGGATGAATTCAAAGCTAATGGATTGGTTTCTAATGTTTACACTTATGGGGTAATGATGGATGGTTATTGTAAAGCTAATAGAATGGAAGATGTTGAAGAATTATTCAATGAGATGGTCACTAAGAAAATGGAGCTAAGTACCATTGTCTATAATATATTAATCAGAGCAAACTGTCATAGCGGAAATGTTGTTGCAGCTTTGCAAGTTCGTGATGATATGAAAAGTAAGGGAATGTTTCCAACTTGTTCCACGTATTCATCTCTAATACACGGTATGTGCAACGTTGGCCGTGTTGAAGAAGCGAAACAGCTTATCGATGAAATGAGGGGGGAGGGATTGTTGACGAATGTTGTTTGTTATACTGCGTTAATTGGTGGTTATTGTAAGCTAGGGCGAATGGATATTGCTGAAGCTACTTTGCTTGAAATGATCTCTTTTAACATACGACCTAATAAATTTACGTACACGGTCATGATTGACGGGTACTGTAAATTAGGGAATATGGAAGAAGCTAATAAGCTTCTGAGCAAGATGAAAGAAAGTGGAATCGTCCCAGATGTTGTTACTTACAATACCTTGAGTAATGGATTATACAAGGGGAAGGACATGGATAAAGCTTATAAAATCTGTGATCAAATGTCCACGGCAGGATTATCTTTAGATGAAATTACTTACACTACTCTCGTACACGGTTGGAATCGACCTACAATTGCTAGCCAAAACTGA

mRNA sequence

ATGCATTTGACTAGATTTAAAATCAATAAGACAGTTCCTGTGTTGTTTCCCTTCTCGCGCCGGTTGGCTTGTGTGTTATCGACCCAACCGCATAAAGAACACCACCAGGAGCCGCCATGGCAGCTCCAGGATCAGTTGCTATATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTGGACTCTTCTAAATGTAGAGCTCTGTTCCCTCATTTGTCTCCTCTTGAGTTTGATCTGATGTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAACTTCTTCTACTTTGCTTCTGACTCTTTCAAATTTCGGTTTACCATTCGTTCTTATTGTATATTGATTCTTTTGCTTATTAATTCCAAGTTTTTACCCCCCGCGAGATTGCTTCTGATTCGTTTGATAGATGGGAAGCTCCCGGTGTTGAATTTCGATTTGAATAAGCTTCACATTGAGATAGCTAATGCATTGTTAGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGGACACAGGCTTTTGATTTGTTGATACATGTATACAGCACACAATTCATGAATCTTGGATTTGGTTGCGCTGTTGATGCGTTTTATTTGTTTGCTCAGAAGGGAATTTTTCCGTCATTGAAAACTTGCAATTTTTTATTGAGCTCTTTGGTGAAGGCTAACGAACTTGAAAAATGTTGTGAAGTATTTGAAGTGATGTCCCGTGGTGTTCGTCCAGATGTTTTCTTGTTTACGAATAATGGGAGATTAGATGATGCCTTCAAGCTCAAGGAGAAGATGATCATAGAAGGGGTAAAGCCAAGTCTTATAACTTATAGTGTGCTTATTAATGGTTTGACAAAACTCGAAAAGTTTGACGAAGCAAATCACGTTTTAAATGAAATGGTAGACACGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAATATCAATGAAGCTCTTAAGATTAGAGATGTGATGATATCCAAAAATATAACTCATACTTCAGTTACTTTATATTCTCTCATGCTAGGGTTTTGCAAGAGTAATCAAATCGAGCGAGCGGAGAATTCTCTAGAGGAGATATTATCTCAAGGGCTATCTATAAACCGTGTTACTTGTTATTCGGTTATCCACTGGTTATGTACAAAGTCGAGATTCGATTCTGCATTGCGATTTACCATGGTGATGTTATCAAAGAACTTCAGGCCTAGTGATCAGCTGTTGACCATATTGGTATGTGGACTCTGTAAGGATGGTAAACATTTAGACGCAACTGAGCTTTGGTTTAGGTTATTTGAGAAAGGGTCTCCAGCGAGTACAGCGACCTCTAACGCTCTAATACATGGACTTTGTGGAGCTGGTAATTTGCAAGAGGCTGTGAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTCCATTGGATCGGATCACATACAATACACTCATTTTAGGTTATTGCAAAGCGGGAAAAGTCGAGGAATGCTTTAGACTTATAGACGAGATGACTAAGCTAGGCATTGAACCAGACATCTACACTTGCAATTTGCTATTGCATGGACTGTGTAATGCAGGAAATTTGGATGGTGCTATTAAGCTTTGGGATGAATTCAAAGCTAATGGATTGGTTTCTAATGTTTACACTTATGGGGTAATGATGGATGGTTATTGTAAAGCTAATAGAATGGAAGATGTTGAAGAATTATTCAATGAGATGGTCACTAAGAAAATGGAGCTAAGTACCATTGTCTATAATATATTAATCAGAGCAAACTGTCATAGCGGAAATGTTGTTGCAGCTTTGCAAGTTCGTGATGATATGAAAAGTAAGGGAATGTTTCCAACTTGTTCCACGTATTCATCTCTAATACACGGTATGTGCAACGTTGGCCGTGTTGAAGAAGCGAAACAGCTTATCGATGAAATGAGGGGGGAGGGATTGTTGACGAATGTTGTTTGTTATACTGCGTTAATTGGTGGTTATTGTAAGCTAGGGCGAATGGATATTGCTGAAGCTACTTTGCTTGAAATGATCTCTTTTAACATACGACCTAATAAATTTACGTACACGGTCATGATTGACGGGTACTGTAAATTAGGGAATATGGAAGAAGCTAATAAGCTTCTGAGCAAGATGAAAGAAAGTGGAATCGTCCCAGATGTTGTTACTTACAATACCTTGAGTAATGGATTATACAAGGGGAAGGACATGGATAAAGCTTATAAAATCTGTGATCAAATGTCCACGGCAGGATTATCTTTAGATGAAATTACTTACACTACTCTCGTACACGGTTGGAATCGACCTACAATTGCTAGCCAAAACTGA

Coding sequence (CDS)

ATGCATTTGACTAGATTTAAAATCAATAAGACAGTTCCTGTGTTGTTTCCCTTCTCGCGCCGGTTGGCTTGTGTGTTATCGACCCAACCGCATAAAGAACACCACCAGGAGCCGCCATGGCAGCTCCAGGATCAGTTGCTATATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTGGACTCTTCTAAATGTAGAGCTCTGTTCCCTCATTTGTCTCCTCTTGAGTTTGATCTGATGTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAACTTCTTCTACTTTGCTTCTGACTCTTTCAAATTTCGGTTTACCATTCGTTCTTATTGTATATTGATTCTTTTGCTTATTAATTCCAAGTTTTTACCCCCCGCGAGATTGCTTCTGATTCGTTTGATAGATGGGAAGCTCCCGGTGTTGAATTTCGATTTGAATAAGCTTCACATTGAGATAGCTAATGCATTGTTAGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGGACACAGGCTTTTGATTTGTTGATACATGTATACAGCACACAATTCATGAATCTTGGATTTGGTTGCGCTGTTGATGCGTTTTATTTGTTTGCTCAGAAGGGAATTTTTCCGTCATTGAAAACTTGCAATTTTTTATTGAGCTCTTTGGTGAAGGCTAACGAACTTGAAAAATGTTGTGAAGTATTTGAAGTGATGTCCCGTGGTGTTCGTCCAGATGTTTTCTTGTTTACGAATAATGGGAGATTAGATGATGCCTTCAAGCTCAAGGAGAAGATGATCATAGAAGGGGTAAAGCCAAGTCTTATAACTTATAGTGTGCTTATTAATGGTTTGACAAAACTCGAAAAGTTTGACGAAGCAAATCACGTTTTAAATGAAATGGTAGACACGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAATATCAATGAAGCTCTTAAGATTAGAGATGTGATGATATCCAAAAATATAACTCATACTTCAGTTACTTTATATTCTCTCATGCTAGGGTTTTGCAAGAGTAATCAAATCGAGCGAGCGGAGAATTCTCTAGAGGAGATATTATCTCAAGGGCTATCTATAAACCGTGTTACTTGTTATTCGGTTATCCACTGGTTATGTACAAAGTCGAGATTCGATTCTGCATTGCGATTTACCATGGTGATGTTATCAAAGAACTTCAGGCCTAGTGATCAGCTGTTGACCATATTGGTATGTGGACTCTGTAAGGATGGTAAACATTTAGACGCAACTGAGCTTTGGTTTAGGTTATTTGAGAAAGGGTCTCCAGCGAGTACAGCGACCTCTAACGCTCTAATACATGGACTTTGTGGAGCTGGTAATTTGCAAGAGGCTGTGAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTCCATTGGATCGGATCACATACAATACACTCATTTTAGGTTATTGCAAAGCGGGAAAAGTCGAGGAATGCTTTAGACTTATAGACGAGATGACTAAGCTAGGCATTGAACCAGACATCTACACTTGCAATTTGCTATTGCATGGACTGTGTAATGCAGGAAATTTGGATGGTGCTATTAAGCTTTGGGATGAATTCAAAGCTAATGGATTGGTTTCTAATGTTTACACTTATGGGGTAATGATGGATGGTTATTGTAAAGCTAATAGAATGGAAGATGTTGAAGAATTATTCAATGAGATGGTCACTAAGAAAATGGAGCTAAGTACCATTGTCTATAATATATTAATCAGAGCAAACTGTCATAGCGGAAATGTTGTTGCAGCTTTGCAAGTTCGTGATGATATGAAAAGTAAGGGAATGTTTCCAACTTGTTCCACGTATTCATCTCTAATACACGGTATGTGCAACGTTGGCCGTGTTGAAGAAGCGAAACAGCTTATCGATGAAATGAGGGGGGAGGGATTGTTGACGAATGTTGTTTGTTATACTGCGTTAATTGGTGGTTATTGTAAGCTAGGGCGAATGGATATTGCTGAAGCTACTTTGCTTGAAATGATCTCTTTTAACATACGACCTAATAAATTTACGTACACGGTCATGATTGACGGGTACTGTAAATTAGGGAATATGGAAGAAGCTAATAAGCTTCTGAGCAAGATGAAAGAAAGTGGAATCGTCCCAGATGTTGTTACTTACAATACCTTGAGTAATGGATTATACAAGGGGAAGGACATGGATAAAGCTTATAAAATCTGTGATCAAATGTCCACGGCAGGATTATCTTTAGATGAAATTACTTACACTACTCTCGTACACGGTTGGAATCGACCTACAATTGCTAGCCAAAACTGA

Protein sequence

MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLDSSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLINSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHVYSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVRPDVFLFTNNGRLDDAFKLKEKMIIEGVKPSLITYSVLINGLTKLEKFDEANHVLNEMVDTGFVPNAVVYNTLIDGYCKMGNINEALKIRDVMISKNITHTSVTLYSLMLGFCKSNQIERAENSLEEILSQGLSINRVTCYSVIHWLCTKSRFDSALRFTMVMLSKNFRPSDQLLTILVCGLCKDGKHLDATELWFRLFEKGSPASTATSNALIHGLCGAGNLQEAVRILKEMLERGFPLDRITYNTLILGYCKAGKVEECFRLIDEMTKLGIEPDIYTCNLLLHGLCNAGNLDGAIKLWDEFKANGLVSNVYTYGVMMDGYCKANRMEDVEELFNEMVTKKMELSTIVYNILIRANCHSGNVVAALQVRDDMKSKGMFPTCSTYSSLIHGMCNVGRVEEAKQLIDEMRGEGLLTNVVCYTALIGGYCKLGRMDIAEATLLEMISFNIRPNKFTYTVMIDGYCKLGNMEEANKLLSKMKESGIVPDVVTYNTLSNGLYKGKDMDKAYKICDQMSTAGLSLDEITYTTLVHGWNRPTIASQN
Homology
[Close]
BLAST of Carg13153 vs. NCBI nr
Match: XP_022942543.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022942544.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022942545.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 492.3 bits (1266), Expect = 3.1e-135
Identity = 247/269 (91.82%), Postives = 254/269 (94.42%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60
           MHLTRFKINKT+PVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD
Sbjct: 1   MHLTRFKINKTIPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60

Query: 61  SSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120
           SSKCRALFPHLSPLEFD MFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI
Sbjct: 61  SSKCRALFPHLSPLEFDRMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120

Query: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180
           NSKFLPPARLLLIRLIDGKLP+LNFDLNKLHIEIAN LLGLTSVVGRFEWTQAFDLLIHV
Sbjct: 121 NSKFLPPARLLLIRLIDGKLPLLNFDLNKLHIEIANTLLGLTSVVGRFEWTQAFDLLIHV 180

Query: 181 YSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240
           YSTQF NLGFGCA DAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR
Sbjct: 181 YSTQFRNLGFGCAFDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240

Query: 241 PDVFLFTN-------NGRLDDAFKLKEKM 263
           PDVFLFTN        G++++A +L  KM
Sbjct: 241 PDVFLFTNVINALCKGGKMENAIELFLKM 269

[Close]
BLAST of Carg13153 vs. NCBI nr
Match: XP_023542002.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023542009.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023542017.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.3 bits (1266), Expect = 3.1e-135
Identity = 248/269 (92.19%), Postives = 254/269 (94.42%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60
           MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD
Sbjct: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60

Query: 61  SSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120
           SSKCRAL PHLSPLEFD MFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCIL+LLLI
Sbjct: 61  SSKCRALLPHLSPLEFDRMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILVLLLI 120

Query: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180
           NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV
Sbjct: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180

Query: 181 YSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240
           YSTQF NLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVK NELEKCCEVFEVMSRGVR
Sbjct: 181 YSTQFRNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKDNELEKCCEVFEVMSRGVR 240

Query: 241 PDVFLFTN-------NGRLDDAFKLKEKM 263
           PDVFLFTN        G++++A +L  KM
Sbjct: 241 PDVFLFTNVINALCKGGKMENAIELFLKM 269

[Close]
BLAST of Carg13153 vs. NCBI nr
Match: XP_022979125.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 478.8 bits (1231), Expect = 3.5e-131
Identity = 243/269 (90.33%), Postives = 251/269 (93.31%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60
           MHLTRFKINKTVPVLFPFSRRLA VLSTQPHKEHHQEPPWQLQD LLYSVSSILSNSSLD
Sbjct: 1   MHLTRFKINKTVPVLFPFSRRLASVLSTQPHKEHHQEPPWQLQDXLLYSVSSILSNSSLD 60

Query: 61  SSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120
           SSKCRALFPHL PLEFD MFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI
Sbjct: 61  SSKCRALFPHLFPLEFDRMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120

Query: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180
           NSKFLPPARLLLIRLIDGKLPVLNFDL+KL+I IANALLGLTSVVGRFEWTQA DLLIHV
Sbjct: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLSKLYISIANALLGLTSVVGRFEWTQALDLLIHV 180

Query: 181 YSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240
           YSTQF NLGFGCAVDAFYLFA+KGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR
Sbjct: 181 YSTQFRNLGFGCAVDAFYLFARKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240

Query: 241 PDVFLFTN-------NGRLDDAFKLKEKM 263
           PDVFLFTN        G++++A +L  KM
Sbjct: 241 PDVFLFTNVINALCKGGKMENAIELFLKM 269

[Close]
BLAST of Carg13153 vs. NCBI nr
Match: XP_022931380.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022931381.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022931382.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 451.4 bits (1160), Expect = 6.1e-123
Identity = 226/269 (84.01%), Postives = 243/269 (90.33%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60
           MHLTRFKINKTVPV+FPFSR++ACVLST+PHKEHHQ+PPWQLQDQLLYSVSSILSNSSLD
Sbjct: 1   MHLTRFKINKTVPVVFPFSRQVACVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLD 60

Query: 61  SSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120
           SSKCRAL PHLSP +FD +FFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYC+LILLL+
Sbjct: 61  SSKCRALLPHLSPFQFDHLFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLV 120

Query: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180
           +SKFLPPARLLLIRLIDGKLPVLN D NKLHIEIAN L GLTSVVGRFE T AFDLLIHV
Sbjct: 121 HSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHV 180

Query: 181 YSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240
           YSTQF NLGF  AVD FYLFA+ GIFPSLKTCNFLLSSLVKANELEKCCEVFEVMS+GVR
Sbjct: 181 YSTQFRNLGFSYAVDVFYLFARNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVR 240

Query: 241 PDVFLFTN-------NGRLDDAFKLKEKM 263
           PDVFLFTN        G++++A +L   M
Sbjct: 241 PDVFLFTNVINALCKGGKMENAMELLMNM 269

[Close]
BLAST of Carg13153 vs. NCBI nr
Match: XP_022984601.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita maxima] >XP_022984602.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita maxima] >XP_022984603.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 449.1 bits (1154), Expect = 3.0e-122
Identity = 225/269 (83.64%), Postives = 243/269 (90.33%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60
           MHLTRFKINKT+PV+FPFSR++ACVLST+PHKEHHQ+PPWQLQDQLLYSVSSILSNSSLD
Sbjct: 1   MHLTRFKINKTLPVVFPFSRQVACVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLD 60

Query: 61  SSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120
           SSKCRAL PHLSP +FD +FFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYC+LILLL+
Sbjct: 61  SSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLV 120

Query: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180
           +SKFLPPARLLLIRLIDGKLPVLN D NKLHIEIAN L GLTSVVGRFE T AFDLLIHV
Sbjct: 121 HSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHV 180

Query: 181 YSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240
           YSTQF NL F  AVD FYLFA+KGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMS+GVR
Sbjct: 181 YSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVR 240

Query: 241 PDVFLFTN-------NGRLDDAFKLKEKM 263
           PDVFLFTN        G++++A +L   M
Sbjct: 241 PDVFLFTNVINALCKGGKMENAMELLMNM 269

[Close]
BLAST of Carg13153 vs. TAIR10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-48
Identity = 111/241 (46.06%), Postives = 148/241 (61.41%), Query Frame = 0 

Query: 29  QPHKEHHQEPPWQLQDQLLYSVSSILSNSSLDSSKCRALFPHLSPLEFDLMFFSVGLKAN 88
           +P K         L ++L    SS+LS  SLD  +C+ L   LSPLEFD +F     K N
Sbjct: 50  RPDKSEETSSDRHLHERL----SSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVN 109

Query: 89  PKTCLNFFYFASDSFKFRFTIRSYCILILLLINSKFLPPARLLLIRLIDGKLPVLNFDLN 148
           PKT L+FF  ASDSF F F++RSYC+LI LL+++  L  AR++LIRLI+G +PVL   L 
Sbjct: 110 PKTALDFFRLASDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLR 169

Query: 149 KLHIEIANALLGLTSVVGRFEWTQAFDLLIHVYSTQFMNLGFGCAVDAFYLFAQKGIFPS 208
              + IA+A+  L+         +  DLLI VY TQF   G   A+D F + A KG+FPS
Sbjct: 170 DSRVAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPS 229

Query: 209 LKTCNFLLSSLVKANELEKCCEVFEVMSRGVRPDVFLFT-------NNGRLDDAFKLKEK 263
             TCN LL+SLV+ANE +KCCE F+V+ +GV PDV+LFT         G++++A KL  K
Sbjct: 230 KTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSK 286

[Close]
BLAST of Carg13153 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 4.0e-04
Identity = 36/123 (29.27%), Postives = 59/123 (47.97%), Query Frame = 0 

Query: 169 EWTQA-FDLLIHVYSTQFMNLGF-GCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELE 228
           EW+ + ++ L+H       N G  G A+         G  P   T N ++ +  K  + E
Sbjct: 525 EWSSSTYNTLLH----GSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAE 584

Query: 229 KCCEVFEVMS---RGVRPDVFLFTN-------NGRLDDAFKLKEKMIIEGVKPSLITYSV 280
           +  ++ +++S   R  RPDV  +TN       +   +D   L E+MI  G+ PS+ T+SV
Sbjct: 585 RAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSV 643

[Close]
BLAST of Carg13153 vs. Swiss-Prot
Match: sp|Q940A6|PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-47
Identity = 111/241 (46.06%), Postives = 148/241 (61.41%), Query Frame = 0 

Query: 29  QPHKEHHQEPPWQLQDQLLYSVSSILSNSSLDSSKCRALFPHLSPLEFDLMFFSVGLKAN 88
           +P K         L ++L    SS+LS  SLD  +C+ L   LSPLEFD +F     K N
Sbjct: 63  RPDKSEETSSDRHLHERL----SSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVN 122

Query: 89  PKTCLNFFYFASDSFKFRFTIRSYCILILLLINSKFLPPARLLLIRLIDGKLPVLNFDLN 148
           PKT L+FF  ASDSF F F++RSYC+LI LL+++  L  AR++LIRLI+G +PVL   L 
Sbjct: 123 PKTALDFFRLASDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLR 182

Query: 149 KLHIEIANALLGLTSVVGRFEWTQAFDLLIHVYSTQFMNLGFGCAVDAFYLFAQKGIFPS 208
              + IA+A+  L+         +  DLLI VY TQF   G   A+D F + A KG+FPS
Sbjct: 183 DSRVAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPS 242

Query: 209 LKTCNFLLSSLVKANELEKCCEVFEVMSRGVRPDVFLFT-------NNGRLDDAFKLKEK 263
             TCN LL+SLV+ANE +KCCE F+V+ +GV PDV+LFT         G++++A KL  K
Sbjct: 243 KTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSK 299

[Close]
BLAST of Carg13153 vs. TrEMBL
Match: tr|A0A1S4DYY2|A0A1S4DYY2_CUCME (pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493057 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.7e-118
Identity = 217/269 (80.67%), Postives = 232/269 (86.25%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60
           MHLTRFKINKT+PVLFPFSRRLACV STQPHKEHHQ+PPWQ QDQL   VSS+LSNSSLD
Sbjct: 1   MHLTRFKINKTIPVLFPFSRRLACVSSTQPHKEHHQDPPWQSQDQLHLWVSSVLSNSSLD 60

Query: 61  SSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120
           SSKC AL PHLSP +FD +FFS+GLKANP TCLNFFYFASDSFKFRFTI SYCILILLL+
Sbjct: 61  SSKCSALLPHLSPFQFDQLFFSIGLKANPMTCLNFFYFASDSFKFRFTIHSYCILILLLV 120

Query: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180
           +SKFLPPARLLLIRLIDG LPVLN D  K HIEIANAL GLTSVVGRFEWTQAFDLLIHV
Sbjct: 121 HSKFLPPARLLLIRLIDGNLPVLNSDFKKFHIEIANALFGLTSVVGRFEWTQAFDLLIHV 180

Query: 181 YSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240
           YSTQF NLGFGCA+D FYL A+KG FPSLKTCNFLLSSLVKANE EKCCEVF+VMS GV 
Sbjct: 181 YSTQFRNLGFGCAIDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFQVMSEGVC 240

Query: 241 PDVFLFTN-------NGRLDDAFKLKEKM 263
           PDVF FTN        G+++ A +L  KM
Sbjct: 241 PDVFSFTNVINALCKGGKMEKATELFMKM 269

[Close]
BLAST of Carg13153 vs. TrEMBL
Match: tr|A0A0A0L008|A0A0A0L008_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055990 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 4.4e-114
Identity = 211/269 (78.44%), Postives = 226/269 (84.01%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLD 60
           MHLTRFKI+KT PVLFPFSRRL CV STQPHKEHHQ+PPWQ QDQL   VSS+LS+SSLD
Sbjct: 1   MHLTRFKISKTTPVLFPFSRRLVCVSSTQPHKEHHQDPPWQSQDQLHLWVSSVLSHSSLD 60

Query: 61  SSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLI 120
           SSKC AL PHLSP +FD +FFS+GLKANP TCLNFFYFAS+SFKFRFTI SYC LILLLI
Sbjct: 61  SSKCSALLPHLSPSQFDQLFFSIGLKANPMTCLNFFYFASNSFKFRFTIHSYCTLILLLI 120

Query: 121 NSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHV 180
            SKF+PPARLLLIRLIDG LPVLN D  K HIEIANAL GLTSVVGRFEWTQAFDLLIHV
Sbjct: 121 RSKFIPPARLLLIRLIDGNLPVLNLDSEKFHIEIANALFGLTSVVGRFEWTQAFDLLIHV 180

Query: 181 YSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVR 240
           YSTQF NLGF CAVD FYL A+KG FPSLKTCNFLLSSLVKANE EKCCEVF VMS G  
Sbjct: 181 YSTQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGAC 240

Query: 241 PDVFLFTN-------NGRLDDAFKLKEKM 263
           PDVF FTN        G++++A +L  KM
Sbjct: 241 PDVFSFTNVINALCKGGKMENAIELFMKM 269

[Close]
BLAST of Carg13153 vs. TrEMBL
Match: tr|A0A2I4EPW0|A0A2I4EPW0_9ROSI (pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Juglans regia OX=51240 GN=LOC108991576 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.7e-68
Identity = 154/284 (54.23%), Postives = 184/284 (64.79%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACV------LSTQPHKEHHQEPPWQLQDQ--------- 60
           M L RF I K   + +  +RRL CV      L  QP +  H+ PP QLQ Q         
Sbjct: 4   MDLRRFPITKPTRIFYSITRRLTCVTSIAHHLQEQPPQSQHR-PPLQLQRQSHSQPPNQS 63

Query: 61  LLYSVSSILSNSSLDSSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKF 120
           LL  VS+ILS  SLDSS C+++ PHLSP EFD +F S+    NPKT LNFFYFAS++F+F
Sbjct: 64  LLNWVSTILSKPSLDSSMCKSVIPHLSPSEFDQIFLSLKSNLNPKTTLNFFYFASEAFRF 123

Query: 121 RFTIRSYCILILLLINSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVV 180
            FT+RSYC+LI LLI S  + PARLLLIRLIDGK+PVL       H+EIA  +  L    
Sbjct: 124 PFTVRSYCLLIRLLIVSNLVSPARLLLIRLIDGKMPVLFASTKNRHVEIATMMADLNLPS 183

Query: 181 GRFEWTQAFDLLIHVYSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANEL 240
            R    QA D+L+HVY TQF NLGFG A+D F L A KG+FPSLKTCNF LSSLVKANEL
Sbjct: 184 ERVLGVQALDMLVHVYCTQFKNLGFGFAIDVFRLSASKGMFPSLKTCNFFLSSLVKANEL 243

Query: 241 EKCCEVFEVMSRGVRPDVFLFT-------NNGRLDDAFKLKEKM 263
           +K CEVFEVM RGV PDV+L +         G+++DA  L  KM
Sbjct: 244 QKSCEVFEVMCRGVSPDVYLLSTAINALCKGGKVEDAIGLFLKM 286

[Close]
BLAST of Carg13153 vs. TrEMBL
Match: tr|M5WX26|M5WX26_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001463mg PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.2e-68
Identity = 157/277 (56.68%), Postives = 193/277 (69.68%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACV-LSTQPHKEHHQEPPWQL------QDQLLYS-VSS 60
           M L R  I+K   +LF  +R L CV  + Q  KE  Q PP Q+       +Q L++ VSS
Sbjct: 1   MDLRRLSISKPT-LLFRINRPLTCVTCNLQRPKEPPQPPPLQVXXXXXPPNQSLHNWVSS 60

Query: 61  ILSNSSLDSSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSY 120
           ILS  SLDSSKC+AL P LS  EFD +F S+    NPKT L+FFYFAS+SFKF+FT+RS+
Sbjct: 61  ILSKPSLDSSKCKALIPLLSSHEFDRVFCSISSNVNPKTALHFFYFASESFKFQFTVRSF 120

Query: 121 CILILLLINSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQ 180
           C+L+ LLI S  + PARLLLIRLIDG +PVL  + N+ H+EIA A+L L +V  +    Q
Sbjct: 121 CVLVRLLILSNLVSPARLLLIRLIDGNVPVLYANHNQRHMEIAIAMLDLNTVSTQGLGVQ 180

Query: 181 AFDLLIHVYSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVF 240
           A DLLIHVY TQF N+GFG A+DAF +F++KG+FPSLKTCNFLLSSLVKANEL K  +VF
Sbjct: 181 ALDLLIHVYCTQFKNMGFGYAIDAFVIFSKKGVFPSLKTCNFLLSSLVKANELHKSYDVF 240

Query: 241 EVMSRGVRPDVFLFT-------NNGRLDDAFKLKEKM 263
           EVM RGV PDV+LFT         G++DDA  L  KM
Sbjct: 241 EVMCRGVSPDVYLFTTAINAFCKGGKVDDAIGLFSKM 276

[Close]
BLAST of Carg13153 vs. TrEMBL
Match: tr|A0A251PV32|A0A251PV32_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G018200 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.2e-68
Identity = 157/277 (56.68%), Postives = 193/277 (69.68%), Query Frame = 0 

Query: 1   MHLTRFKINKTVPVLFPFSRRLACV-LSTQPHKEHHQEPPWQL------QDQLLYS-VSS 60
           M L R  I+K   +LF  +R L CV  + Q  KE  Q PP Q+       +Q L++ VSS
Sbjct: 5   MDLRRLSISKPT-LLFRINRPLTCVTCNLQRPKEPPQPPPLQVXXXXXPPNQSLHNWVSS 64

Query: 61  ILSNSSLDSSKCRALFPHLSPLEFDLMFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSY 120
           ILS  SLDSSKC+AL P LS  EFD +F S+    NPKT L+FFYFAS+SFKF+FT+RS+
Sbjct: 65  ILSKPSLDSSKCKALIPLLSSHEFDRVFCSISSNVNPKTALHFFYFASESFKFQFTVRSF 124

Query: 121 CILILLLINSKFLPPARLLLIRLIDGKLPVLNFDLNKLHIEIANALLGLTSVVGRFEWTQ 180
           C+L+ LLI S  + PARLLLIRLIDG +PVL  + N+ H+EIA A+L L +V  +    Q
Sbjct: 125 CVLVRLLILSNLVSPARLLLIRLIDGNVPVLYANHNQRHMEIAIAMLDLNTVSTQGLGVQ 184

Query: 181 AFDLLIHVYSTQFMNLGFGCAVDAFYLFAQKGIFPSLKTCNFLLSSLVKANELEKCCEVF 240
           A DLLIHVY TQF N+GFG A+DAF +F++KG+FPSLKTCNFLLSSLVKANEL K  +VF
Sbjct: 185 ALDLLIHVYCTQFKNMGFGYAIDAFVIFSKKGVFPSLKTCNFLLSSLVKANELHKSYDVF 244

Query: 241 EVMSRGVRPDVFLFT-------NNGRLDDAFKLKEKM 263
           EVM RGV PDV+LFT         G++DDA  L  KM
Sbjct: 245 EVMCRGVSPDVYLFTTAINAFCKGGKVDDAIGLFSKM 280

The following BLAST results are available for this feature:
BLAST of Carg13153 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942543.13.1e-13591.82pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur... [more]
XP_023542002.13.1e-13592.19pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur... [more]
XP_022979125.13.5e-13190.33LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g19440, chlo... [more]
XP_022931380.16.1e-12384.01pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur... [more]
XP_022984601.13.0e-12283.64pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur... [more]
BLAST of Carg13153 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G19440.11.2e-4846.06Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G48810.14.0e-0429.27Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg13153 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q940A6|PP325_ARATH2.2e-4746.06Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop... [more]
BLAST of Carg13153 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DYY2|A0A1S4DYY2_CUCME1.7e-11880.67pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1 ... [more]
tr|A0A0A0L008|A0A0A0L008_CUCSA4.4e-11478.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055990 PE=4 SV=1[more]
tr|A0A2I4EPW0|A0A2I4EPW0_9ROSI1.7e-6854.23pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Juglans ... [more]
tr|M5WX26|M5WX26_PRUPE2.2e-6856.68Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001463mg PE=4 SV=1[more]
tr|A0A251PV32|A0A251PV32_PRUPE2.2e-6856.68Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G018200 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13153-RACarg13153-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 301..332
e-value: 2.6E-12
score: 46.1
coord: 651..682
e-value: 1.2E-7
score: 31.2
coord: 545..578
e-value: 3.5E-9
score: 36.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 482..516
e-value: 6.6E-11
score: 39.7
coord: 587..621
e-value: 5.3E-6
score: 24.3
coord: 657..690
e-value: 6.0E-7
score: 27.3
coord: 552..585
e-value: 3.9E-9
score: 34.1
coord: 450..480
e-value: 1.7E-7
score: 29.0
coord: 307..337
e-value: 5.5E-8
score: 30.5
coord: 517..550
e-value: 1.9E-7
score: 28.8
coord: 272..306
e-value: 3.8E-8
score: 31.0
coord: 623..653
e-value: 5.4E-8
score: 30.5
coord: 211..242
e-value: 2.5E-4
score: 19.0
coord: 727..761
e-value: 1.5E-4
score: 19.7
coord: 692..726
e-value: 5.6E-12
score: 43.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 480..528
e-value: 7.8E-18
score: 64.3
coord: 692..738
e-value: 7.9E-16
score: 57.9
coord: 246..283
e-value: 4.6E-8
score: 33.0
coord: 585..633
e-value: 5.1E-13
score: 48.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 211..236
e-value: 0.045
score: 13.9
coord: 448..477
e-value: 1.1E-6
score: 28.4
coord: 415..441
e-value: 0.13
score: 12.5
coord: 343..371
e-value: 1.1
score: 9.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 515..549
score: 11.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..479
score: 11.871
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 208..238
score: 7.487
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..269
score: 5.81
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 11.827
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 725..759
score: 10.435
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 11.772
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 550..584
score: 12.342
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 620..654
score: 11.663
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 655..689
score: 11.685
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 480..514
score: 14.228
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 690..724
score: 14.524
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 8.703
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 585..619
score: 10.994
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 7.509
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 580..648
e-value: 2.0E-18
score: 68.5
coord: 508..579
e-value: 3.0E-21
score: 77.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 649..778
e-value: 3.8E-38
score: 133.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 389..507
e-value: 1.0E-27
score: 99.5
coord: 248..388
e-value: 2.4E-35
score: 124.5
NoneNo IPR availablePANTHERPTHR24015:SF1067SUBFAMILY NOT NAMEDcoord: 249..734
NoneNo IPR availablePANTHERPTHR24015:SF1067SUBFAMILY NOT NAMEDcoord: 721..770
NoneNo IPR availablePANTHERPTHR24015:SF1067SUBFAMILY NOT NAMEDcoord: 18..236
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 721..770
coord: 18..236
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 249..734
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 459..547
coord: 654..756