Carg11430 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11430
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_025 : 1000942 .. 1006970 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGTCTGTGTGTTATCCACCGAGCCGCATAAAGAACATCACCAGGACCCGCCATGGCAGCTCCAGGATCAGTTGCTCTATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTCGACTCTTCTAAATGTAGAGCCCTCTTGCCCCATTTGTCTCCTTTTCAGTTTGATCAGCTCTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAATTTCTTTTACTTTGCGTCTGATTCTTTCAAGTTTCGATTTACCATTCGCTCCTATTGTTTATTGATTCTTTTGCTTGTTCATTCCAAGTTTTTACCACCCGCGAGATTGCTTCTGATTCGTTTGATAGACGGGAAGCTCCCGGTGTTGAATTCGGATTCGAATAAGCTTCACATTGAGATAGCTAATGAATTATTTGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGCACACATGCATTTGATTTGTTGATACATGTATACAGCACACAATTCAGAAATCTTGGCTTTAGTTACGCTGTTGATGTGTTTTATTTGTTTGCTCGCAACGGGATCTTTCCGTCCTTAAAGACTTGTAACTTTTTATTGAGCTCTTTGGTGAAGGCTAATGAACTTGAGAAATGCTGTGAAGTATTTGAAGTGATGTCCCAAGGTGTTCGTCCGGATGTTTTCCTGTTCACGAATGTAATAAATGCTTTGTGCAAAGGAGGGAAGATGGAAAATGCCATGGAGTTATTAATGAATATGGAGAAGTTGGGTATTTCTCCAAATGTTGTTACTTATAATAGTATCATTCATGGTTTATGCCAGAATGGGAGATTAGGCGATGCCTTTGAGCTCAAGGAGAAGATGACAATAGAAGGGGTAAAGCCAAGTCTTATAACGTATAGTGTGCTTATTAATGGTTTGACGAAACTGGAAAAATTTGACAAAGCAAACGATGTTTTAAATGAAATGGTTGATGTGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAAGATCAATGAAGCACTTAAGATTAGAGATGTGATGGTATCCAAAAATATAACTCCTACTTCAGTTACTTTATATACTCTCTTGCAAGGATTTTGCAAGAGTAATCAAATCGAGCAAGCAGAGAATACTCTTGAGGAGATATTATCACAAGGATTTCCTATAAACCCTGTTACCTGTTATTCGGTTATCCACTGGTTATGTACGAAATCTAGGTTCCACTATGCATTGCGATTTACCATGGTGATGTTATCGAAGAACTTCAGGCCTAGTGATCAGCTGTTAACCATATTGGTATGTGGGCTCTGTAAGGACGGAAAACATCTAGAAGCAACTGAACTTTGGTTTAGGTTATTGGAGAAAGGGTCTCCAGCAAGTACCGCAACCTCCAACGCTCTAATTCATGGACTTTGTGGGGCTGGTAAAATGGCAGAGGCTGTTAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTTCATTGGATCGGATCACGTACAACACGCTCATCTTAGGTTGTTGCAAAGAGGGAAAAGTCGAGGAGTGCTTTAGACTTAAAGAAGAGATGACCAACCAAGGAATTCAACCAGACATCTATACGTGCAATTTGCTATTGTATGGACTGTGCAATGCTGGAAAATTAGATGATGCTATTAAGCTTTGGGATGAATTCAAAGCCAGTGGGTTAATTTCTAATGTCCACACTTATGGGGTTATGATGGATGTTTATTGTAAAGCTAACAGAATGGAAGATGTTGAAAAATTATTCAATGAGTTGGTCACTAAGAAAATGGAGCTAAATTCCATTGTCTACAACATATTTATCAGAGCACATTGCCGTAATGGAAACGTTGCTGCAGCTTTGCAACTTCGTGATGATATGAAAAGCAAGGGAATTTTTCCAACTTGTGCCACATATTCTTCTCTAATACACGGCATGTGCAACATTGGCCTTGTTGAAGATGCAAAACGTCTTATTGATGAAATGAGAGAGGAGGGATTGTTGCCAAATGTTGTTTGCTATACTGCATTAATTGGCGGTTATTGTAAGCTGGGGCAAATGGATATTGCCGAAGCAACTTGGCTCGAGATGACCTCTTTGAACATAAGGCCTAATAAAATTACCTATACTGTCATGATTGACGGGTACTGTAAATTAGGGAATATGGAAGAAGCAAATAACCTTTTGAGCAAAATGAAAGAAAGTGGAATCGTCCCAGATGTCGTTACTTACAATGCCTTGACTAATGGGTTCTGCAAGGGAAAGGACATGGATAAAGCTTTTAAAACATGCGATGAAATGGCCACCGGAGGATTGTCTTTAGATGAAATTACTTACACTACTCTCGTGCACGGTTGGAATCAACCAACAATTACGAGCCAAGACTGATCTAATTTCTTCCGAGGTTCTTCGTTACCTCATTATCTGTTGATAATGTGATTACTGTTTCGTGTTCAACTGGTCTGAAAATTATTCTTTTGTTTTATCTTTGTTTTTTATTTATTAGTGACTGGATACGTCAGTATTGTTTAGCTTATGCATTCTGAAATATTGGAGGCTGTCCACCTTCTCTTGTCCAAATGAAAGAGCCAAAGACGAACATCCGTCTTTAGTCTCTGGAGGCTGGTAGGCTTTTATTTTATAGTGTATTCCATTTCCACTCAGTATATATATCATTAGTTTATATGTCGTATTGCTACAGGTAAAGCATATGTTCTGAAAACTTGGTATTATTATTTAACAGATCGGGGAAGTGCTTAGCTCGTAACGTGTTGAGAACATAAAGTGCTCTATCAAGATCCCCAGCAAAAAAAAAGATAGCAATCGATAGAGTGACATTGGTTCTCCGACTCGAACCCAAATGAAACTTGGCAAACGTATTAGATCTGGTATGTCATTTTTATTGCAATGTTTCTTGCACAGAAAGCGGGAACAGTTAGATTTTTCATGACTTGTAATGAGCATGTATAGTGTTGATGCAGATTTTGCAGGCTTGAATCTGTATCTCAGGAAACAATGTCGTCATATGTGGGAGGTTTTCATCGGCACATTGGAATCGGGCATAGAAATTGCTCAGTTTCATGGATATGTAAGTTCATCTACTCCATCTTGTTATCAGTCATATACTCACAGAAATGACAATGATATGCTCTTTTGTTATTGTTTTCCTTCTATAATTGAAAATGCTGTAAGCACCGTATGTGATTTTCTTTTATGACCGGGGTGTTTGCATCAGTGACCACCTATAAGCATTTTGAGCTTTAGGCCTGCTCAGTCTACGAACTGCACATTTACGTTGTTGTTGTTGTTTTTTTTCTTTAATTATTATTTTAGGAACAGCACATTTAATTTTAAGTGCTGAAAAGTGAATATATTTCTGTTTATAGAAAAAATTCTGGCTTGAAGGAAACATATATAATTGACAACCATATGTGAACAGACTCGGCTGTTGGTATTTATTTATATTTTTTTGAGCTGAACAATATGTTGAGGCGGGGATATGAATCTCTAAACTTTGGATCGTGGGGTACAATGCCTTGACCAATTGAACTAACTCAGATTGCCTGGCCTAAGATGAGTTCAAAAGAAAAACATGTTGGATGATACCATCTTATTTATCCATCTATTTTTGTCTCTAACTTTCAAAAAAATACTCATTTTTGTGGTACTTGTTATTAGTTCTGCTGTGAATTATTGGGCAAAGGGATGACTAGCTTTGAATATGCACACGAACGTGTTGACGTGGGCATCCTGAGATTGAGTGTTGATTGGGTTTCAAATATGACTTAGGTCGTTTCTCAAGATATCCTCGTGTTAATATGATAATATACATATTTAAAACCATATTATCCATTTGTCACAAATAATTGATGGTTGTATAAAATATCAAACACAAAGCCATTACTTCATAGAGTTTTGGACCTTAAATAGTCGTTTTGAAAGTTCAAAGGCAAAATCAAATTAATTGGAAAGTTACGATAGTGAAGATGCATCACTTTACGAACATTTAGCAACCCACCAACTTGAATATTGTTCAACTGGTTAAGGCATATACCTTCGATCAGAGGTTAAAGGTTCGAATTTGTCATCCTCACATGTTATGTTGAACTAAAAAATCATAAGGCATATAATCTCTTCTTTGGTCTATTTATTGCCCATGCTAGCCAGATTTTTCTCCATTGGGGCTTGTTTTTTTTAGGTAATATGTGTCTCCCTTTCTTCCTGTCCTTTTCTGGTTGGCCTTTTGTTTGATCAGCCTGCTGTGTAATTTTTCTTCTGTTGGGAAAATTATAACAGAACAAATGGTAAGCTAATGCTTGTGAAATACGTTTATGTAAATTATATTTGAATTTTATGAGATAAGAATTGAAATATTCATTTTGAGCCAATCAATTATACTGCAAAAGCGATCAATATGAGAAGAAAAATCAGGAAAGAGATATTAAATGGTTCAATAAGAACTATCCCTTCTGCAAATGGACACGGTTCACTCTTGTTTCCTCTGATTTTGCAGAGGTATTCCGATCTACCCGGTTAGCGAATCAATTTCAGCCACATGGAAGTTGAATAAGCCCTTCATTCTGTGAGTAACCTTACATTCTCTATTCATACTAGTCATTTAAAATGTATGCTATGAATCGACATTTTCGTTGTTGTTTCAATATATCTAATCTTTAATATTCTTAAAACAGCTCGGTCTCGGACAAATACGCTTCTTGTTTGTATACACCACGTCGGGTTATGCTTGTAAGTACAGTTGATTCTAGTTCTCATATATAACAATCACAAATCTTGGGAAATTTTCTGTGCTTGTTGTTGGCTTGTAGACTTAGTGAGGTTATTTAATACAATTGCTTTTCAAATGGATACCGTTGATTTAATCTGTTCAACAACAAAGGGGCCCGGCTCTATTTGCTTTTTGTGAATTCAAAAGCAATAAGGTTATCTGGATGGAGCAACAGGCCTTTGTTAAACACCCTTTTAACTGTTTTCGTCATTAAACCAATTGACCTGGGTGTTAACTGCAGCTCCCCCGCCATTGGGAATGCTCTCCAGGACATTCTCGTGGCCTTTAGGATAATAAATTCCAGTTCGCCCATCAAGCACCCATGGAGTTTCCTCACCCCTCACAGGGCTCTTGTTGCTCTTCAGTTCCTTGCTTTCTGTTTCAACTCTCTCCCTCATCATATCTGGTGAAGAGCTTTTTCTGTGGAAGCCCTTCCGCCCGATCGGCCTGCGCTAAAGAATTCAACCGAATCAGATAAACAAGGTACTGTGTTGTATCGATATTCCGTATGTGGCCGTTATACATCTCCCCACCCTGACTTAATCGATTGAACGTGACAAAATCAACCATCAAATTGATCATACTTGAACAGAACTAACTGACTATTATTCGATTTTATACGACCAACAGTCATGCTTTAAATGGACCTAGTTGAGTCATTCCGTTTCTGTTTTTGGTTTCGTTTAGCAGCATTCTAATCTTAGATCAAGGAAAGTACTTGATGGGTTGGGTGAGTTGAAGAAGGAACTTACTTGAAGAACATGGAGTTCATCGTCTGAGCCCCTCTCACAAATGCAGTGGCCATGCCTTCCTCCCAATGAGGTAAGTGAAGATGGGATGAACAAATGGGAATTTGGTTGTTTTGTATATATAGGTGAAAAGAGAGGCTATCCGTTTCCTCCATCCCTATGAAGATTCTGAAGAATGGGATGAATTTGTCCTTTTATTTACTCCTTTTGTGCTGCCCACTCCTTGGAGTTGGTTTGTGAAAATGAACCTTCAAAATTCCTCTTCCCATACTCCATAAGCTAAAGTATGTTATTGGGCCTAATGGGCTTTGCTTTCACCTTAACTTACCTAATGGGCCTAATGGGCTTGATCTGTACCTCCTGGCCCATAATGAAAACCATTGATTTCAGGAGCTTTTTTTTTAGGGTTTGAGAAAGGGAATTTTAGTCCACTTATTTTTCGATTGGGACATCTAATTTATTCTGCCCATTCTTCT

mRNA sequence

GTGGTCTGTGTGTTATCCACCGAGCCGCATAAAGAACATCACCAGGACCCGCCATGGCAGCTCCAGGATCAGTTGCTCTATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTCGACTCTTCTAAATGTAGAGCCCTCTTGCCCCATTTGTCTCCTTTTCAGTTTGATCAGCTCTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAATTTCTTTTACTTTGCGTCTGATTCTTTCAAGTTTCGATTTACCATTCGCTCCTATTGTTTATTGATTCTTTTGCTTGTTCATTCCAAGTTTTTACCACCCGCGAGATTGCTTCTGATTCGTTTGATAGACGGGAAGCTCCCGGTGTTGAATTCGGATTCGAATAAGCTTCACATTGAGATAGCTAATGAATTATTTGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGCACACATGCATTTGATTTGTTGATACATGTATACAGCACACAATTCAGAAATCTTGGCTTTAGTTACGCTGTTGATGTGTTTTATTTGTTTGCTCGCAACGGGATCTTTCCGTCCTTAAAGACTTGTAACTTTTTATTGAGCTCTTTGGTGAAGGCTAATGAACTTGAGAAATGCTGTGAAGTATTTGAAGTGATGTCCCAAGGTGTTCGTCCGGATGTTTTCCTGTTCACGAATGTAATAAATGCTTTGTGCAAAGGAGGGAAGATGGAAAATGCCATGGAGTTATTAATGAATATGGAGAAGTTGGGTATTTCTCCAAATGTTGTTACTTATAATAGTATCATTCATGGTTTATGCCAGAATGGGAGATTAGGCGATGCCTTTGAGCTCAAGGAGAAGATGACAATAGAAGGGGTAAAGCCAAGTCTTATAACGTATAGTGTGCTTATTAATGGTTTGACGAAACTGGAAAAATTTGACAAAGCAAACGATGTTTTAAATGAAATGGTTGATGTGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAAGATCAATGAAGCACTTAAGATTAGAGATGTGATGGTATCCAAAAATATAACTCCTACTTCAGTTACTTTATATACTCTCTTGCAAGGATTTTGCAAGAGTAATCAAATCGAGCAAGCAGAGAATACTCTTGAGGAGATATTATCACAAGGATTTCCTATAAACCCTGTTACCTGTTATTCGGTTATCCACTGGTTATGTACGAAATCTAGGTTCCACTATGCATTGCGATTTACCATGGTGATGTTATCGAAGAACTTCAGGCCTAGTGATCAGCTGTTAACCATATTGGTATGTGGGCTCTGTAAGGACGGAAAACATCTAGAAGCAACTGAACTTTGGTTTAGGTTATTGGAGAAAGGGTCTCCAGCAAGTACCGCAACCTCCAACGCTCTAATTCATGGACTTTGTGGGGCTGGTAAAATGGCAGAGGCTGTTAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTTCATTGGATCGGATCACGTACAACACGCTCATCTTAGGTTGTTGCAAAGAGGGAAAAGTCGAGGAGTGCTTTAGACTTAAAGAAGAGATGACCAACCAAGGAATTCAACCAGACATCTATACGTGCAATTTGCTATTGTATGGACTGTGCAATGCTGGAAAATTAGATGATGCTATTAAGCTTTGGGATGAATTCAAAGCCAGTGGGTTAATTTCTAATGTCCACACTTATGGGGTTATGATGGATGTTTATTGTAAAGCTAACAGAATGGAAGATGTTGAAAAATTATTCAATGAGTTGGTCACTAAGAAAATGGAGCTAAATTCCATTGTCTACAACATATTTATCAGAGCACATTGCCGTAATGGAAACGTTGCTGCAGCTTTGCAACTTCGTGATGATATGAAAAGCAAGGGAATTTTTCCAACTTGTGCCACATATTCTTCTCTAATACACGGCATGTGCAACATTGGCCTTGTTGAAGATGCAAAACGTCTTATTGATGAAATGAGAGAGGAGGGATTGTTGCCAAATGTTGTTTGCTATACTGCATTAATTGGCGGTTATTGTAAGCTGGGGCAAATGGATATTGCCGAAGCAACTTGGCTCGAGATGACCTCTTTGAACATAAGGCCTAATAAAATTACCTATACTGTCATGATTGACGGGTACTGTAAATTAGGGAATATGGAAGAAGCAAATAACCTTTTGAGCAAAATGAAAGAAAGTGGAATCGTCCCAGATGTCGTTACTTACAATGCCTTGACTAATGGGTTCTGCAAGGGAAAGGACATGGATAAAGCTTTTAAAACATGCGATGAAATGGCCACCGGAGGATTGTCTTTAGATGAAATTACTTACACTACTCTCGTGCACGATTTTGCAGGCTTGAATCTGTATCTCAGGAAACAATGTCGTCATATGTGGGAGGTTTTCATCGGCACATTGGAATCGGGCATAGAAATTGCTCAGTTTCATGGATATAGGTATTCCGATCTACCCGGTTAGCGAATCAATTTCAGCCACATGGAAGTTGAATAAGCCCTTCATTCTCTCGGTCTCGGACAAATACGCTTCTTGTTTGTATACACCACGTCGGGTTATGCTTGTAAGTACAGTTGATTCTAGTTCTCATATATAACAATCACAAATCTTGGGAAATTTTCTGTGCTTGTTGTTGGCTTGTAGACTTAGTGAGGTTATTTAATACAATTGCTTTTCAAATGGATACCGTTGATTTAATCTGTTCAACAACAAAGGGGCCCGGCTCTATTTGCTTTTTGTGAATTCAAAAGCAATAAGGTTATCTGGATGGAGCAACAGGCCTTTGTTAAACACCCTTTTAACTGTTTTCGTCATTAAACCAATTGACCTGGGTGTTAACTGCAGCTCCCCCGCCATTGGGAATGCTCTCCAGGACATTCTCGTGGCCTTTAGGATAATAAATTCCAGTTCGCCCATCAAGCACCCATGGAGTTTCCTCACCCCTCACAGGGCTCTTGTTGCTCTTCAGTTCCTTGCTTTCTGTTTCAACTCTCTCCCTCATCATATCTGGTGAAGAGCTTTTTCTGTGGAAGCCCTTCCGCCCGATCGGCCTGCGCTAAAGAATTCAACCGAATCAGATAAACAAGGTACTGTGTTGTATCGATATTCCGTATGTGGCCGTTATACATCTCCCCACCCTGACTTAATCGATTGAACGTGACAAAATCAACCATCAAATTGATCATACTTGAACAGAACTAACTGACTATTATTCGATTTTATACGACCAACAGTCATGCTTTAAATGGACCTAGTTGAGTCATTCCGTTTCTGTTTTTGGTTTCGTTTAGCAGCATTCTAATCTTAGATCAAGGAAAGTACTTGATGGGTTGGGTGAGTTGAAGAAGGAACTTACTTGAAGAACATGGAGTTCATCGTCTGAGCCCCTCTCACAAATGCAGTGGCCATGCCTTCCTCCCAATGAGGTAAGTGAAGATGGGATGAACAAATGGGAATTTGGTTGTTTTGTATATATAGGTGAAAAGAGAGGCTATCCGTTTCCTCCATCCCTATGAAGATTCTGAAGAATGGGATGAATTTGTCCTTTTATTTACTCCTTTTGTGCTGCCCACTCCTTGGAGTTGGTTTGTGAAAATGAACCTTCAAAATTCCTCTTCCCATACTCCATAAGCTAAAGTATGTTATTGGGCCTAATGGGCTTTGCTTTCACCTTAACTTACCTAATGGGCCTAATGGGCTTGATCTGTACCTCCTGGCCCATAATGAAAACCATTGATTTCAGGAGCTTTTTTTTTAGGGTTTGAGAAAGGGAATTTTAGTCCACTTATTTTTCGATTGGGACATCTAATTTATTCTGCCCATTCTTCT

Coding sequence (CDS)

GTGGTCTGTGTGTTATCCACCGAGCCGCATAAAGAACATCACCAGGACCCGCCATGGCAGCTCCAGGATCAGTTGCTCTATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTCGACTCTTCTAAATGTAGAGCCCTCTTGCCCCATTTGTCTCCTTTTCAGTTTGATCAGCTCTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAATTTCTTTTACTTTGCGTCTGATTCTTTCAAGTTTCGATTTACCATTCGCTCCTATTGTTTATTGATTCTTTTGCTTGTTCATTCCAAGTTTTTACCACCCGCGAGATTGCTTCTGATTCGTTTGATAGACGGGAAGCTCCCGGTGTTGAATTCGGATTCGAATAAGCTTCACATTGAGATAGCTAATGAATTATTTGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGCACACATGCATTTGATTTGTTGATACATGTATACAGCACACAATTCAGAAATCTTGGCTTTAGTTACGCTGTTGATGTGTTTTATTTGTTTGCTCGCAACGGGATCTTTCCGTCCTTAAAGACTTGTAACTTTTTATTGAGCTCTTTGGTGAAGGCTAATGAACTTGAGAAATGCTGTGAAGTATTTGAAGTGATGTCCCAAGGTGTTCGTCCGGATGTTTTCCTGTTCACGAATGTAATAAATGCTTTGTGCAAAGGAGGGAAGATGGAAAATGCCATGGAGTTATTAATGAATATGGAGAAGTTGGGTATTTCTCCAAATGTTGTTACTTATAATAGTATCATTCATGGTTTATGCCAGAATGGGAGATTAGGCGATGCCTTTGAGCTCAAGGAGAAGATGACAATAGAAGGGGTAAAGCCAAGTCTTATAACGTATAGTGTGCTTATTAATGGTTTGACGAAACTGGAAAAATTTGACAAAGCAAACGATGTTTTAAATGAAATGGTTGATGTGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAAGATCAATGAAGCACTTAAGATTAGAGATGTGATGGTATCCAAAAATATAACTCCTACTTCAGTTACTTTATATACTCTCTTGCAAGGATTTTGCAAGAGTAATCAAATCGAGCAAGCAGAGAATACTCTTGAGGAGATATTATCACAAGGATTTCCTATAAACCCTGTTACCTGTTATTCGGTTATCCACTGGTTATGTACGAAATCTAGGTTCCACTATGCATTGCGATTTACCATGGTGATGTTATCGAAGAACTTCAGGCCTAGTGATCAGCTGTTAACCATATTGGTATGTGGGCTCTGTAAGGACGGAAAACATCTAGAAGCAACTGAACTTTGGTTTAGGTTATTGGAGAAAGGGTCTCCAGCAAGTACCGCAACCTCCAACGCTCTAATTCATGGACTTTGTGGGGCTGGTAAAATGGCAGAGGCTGTTAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTTCATTGGATCGGATCACGTACAACACGCTCATCTTAGGTTGTTGCAAAGAGGGAAAAGTCGAGGAGTGCTTTAGACTTAAAGAAGAGATGACCAACCAAGGAATTCAACCAGACATCTATACGTGCAATTTGCTATTGTATGGACTGTGCAATGCTGGAAAATTAGATGATGCTATTAAGCTTTGGGATGAATTCAAAGCCAGTGGGTTAATTTCTAATGTCCACACTTATGGGGTTATGATGGATGTTTATTGTAAAGCTAACAGAATGGAAGATGTTGAAAAATTATTCAATGAGTTGGTCACTAAGAAAATGGAGCTAAATTCCATTGTCTACAACATATTTATCAGAGCACATTGCCGTAATGGAAACGTTGCTGCAGCTTTGCAACTTCGTGATGATATGAAAAGCAAGGGAATTTTTCCAACTTGTGCCACATATTCTTCTCTAATACACGGCATGTGCAACATTGGCCTTGTTGAAGATGCAAAACGTCTTATTGATGAAATGAGAGAGGAGGGATTGTTGCCAAATGTTGTTTGCTATACTGCATTAATTGGCGGTTATTGTAAGCTGGGGCAAATGGATATTGCCGAAGCAACTTGGCTCGAGATGACCTCTTTGAACATAAGGCCTAATAAAATTACCTATACTGTCATGATTGACGGGTACTGTAAATTAGGGAATATGGAAGAAGCAAATAACCTTTTGAGCAAAATGAAAGAAAGTGGAATCGTCCCAGATGTCGTTACTTACAATGCCTTGACTAATGGGTTCTGCAAGGGAAAGGACATGGATAAAGCTTTTAAAACATGCGATGAAATGGCCACCGGAGGATTGTCTTTAGATGAAATTACTTACACTACTCTCGTGCACGATTTTGCAGGCTTGAATCTGTATCTCAGGAAACAATGTCGTCATATGTGGGAGGTTTTCATCGGCACATTGGAATCGGGCATAGAAATTGCTCAGTTTCATGGATATAGGTATTCCGATCTACCCGGTTAG

Protein sequence

VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFARNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNSIIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVLINGLTKLEKFDKANDVLNEMVDVGFVPNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTLYTLLQGFCKSNQIEQAENTLEEILSQGFPINPVTCYSVIHWLCTKSRFHYALRFTMVMLSKNFRPSDQLLTILVCGLCKDGKHLEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTLILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNLLLYGLCNAGKLDDAIKLWDEFKASGLISNVHTYGVMMDVYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQLRDDMKSKGIFPTCATYSSLIHGMCNIGLVEDAKRLIDEMREEGLLPNVVCYTALIGGYCKLGQMDIAEATWLEMTSLNIRPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCKGKDMDKAFKTCDEMATGGLSLDEITYTTLVHDFAGLNLYLRKQCRHMWEVFIGTLESGIEIAQFHGYRYSDLPG

Homology

[Close]

BLAST of Carg11430 vs. NCBI nr
Match: XP_022931380.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022931381.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022931382.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 497.3 bits (1279), Expect = 1.0e-136
Identity = 247/249 (99.20%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 60
           V CVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFD LFF
Sbjct: 22  VACVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDHLFF 81

Query: 61  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 120
           SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP
Sbjct: 82  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 141

Query: 121 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 180
           VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA
Sbjct: 142 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 201

Query: 181 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 240
           RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN
Sbjct: 202 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 261

Query: 241 AMELLMNME 250
           AMELLMNME
Sbjct: 262 AMELLMNME 270

[Close]

BLAST of Carg11430 vs. NCBI nr
Match: XP_022984601.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita maxima] >XP_022984602.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita maxima] >XP_022984603.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 493.4 bits (1269), Expect = 1.5e-135
Identity = 246/249 (98.80%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 1   VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 60
           V CVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF
Sbjct: 22  VACVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 81

Query: 61  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 120
           SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP
Sbjct: 82  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 141

Query: 121 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 180
           VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNL FSYAVDVFYLFA
Sbjct: 142 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFA 201

Query: 181 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 240
           R GIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN
Sbjct: 202 RKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 261

Query: 241 AMELLMNME 250
           AMELLMNME
Sbjct: 262 AMELLMNME 270

[Close]

BLAST of Carg11430 vs. NCBI nr
Match: XP_023552294.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023552295.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023552296.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.5 bits (1264), Expect = 5.6e-135
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 1   VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 60
           V CVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF
Sbjct: 22  VACVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 81

Query: 61  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 120
           SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLID KLP
Sbjct: 82  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDRKLP 141

Query: 121 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 180
           VLNSD NKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA
Sbjct: 142 VLNSDLNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 201

Query: 181 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 240
           RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGV PDVFLFTNVINALCKGGKMEN
Sbjct: 202 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVSPDVFLFTNVINALCKGGKMEN 261

Query: 241 AMELLMNME 250
           AMELLMNME
Sbjct: 262 AMELLMNME 270

[Close]

BLAST of Carg11430 vs. NCBI nr
Match: XP_023542002.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023542009.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023542017.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 448.0 bits (1151), Expect = 7.1e-122
Identity = 220/249 (88.35%), Postives = 234/249 (93.98%), Query Frame = 0


Query: 1   VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 60
           + CVLST+PHKEHHQ+PPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSP +FD++FF
Sbjct: 22  LACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPLEFDRMFF 81

Query: 61  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 120
           SVGLKANPKTCLNFFYFASDSFKFRFTIRSYC+L+LLL++SKFLPPARLLLIRLIDGKLP
Sbjct: 82  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILVLLLINSKFLPPARLLLIRLIDGKLP 141

Query: 121 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 180
           VLN D NKLHIEIAN L GLTSVVGRFE T AFDLLIHVYSTQFRNLGF  AVD FYLFA
Sbjct: 142 VLNFDLNKLHIEIANALLGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFGCAVDAFYLFA 201

Query: 181 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 240
           + GIFPSLKTCNFLLSSLVK NELEKCCEVFEVMS+GVRPDVFLFTNVINALCKGGKMEN
Sbjct: 202 QKGIFPSLKTCNFLLSSLVKDNELEKCCEVFEVMSRGVRPDVFLFTNVINALCKGGKMEN 261

Query: 241 AMELLMNME 250
           A+EL + ME
Sbjct: 262 AIELFLKME 270

[Close]

BLAST of Carg11430 vs. NCBI nr
Match: XP_022942543.1 (pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022942544.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata] >XP_022942545.1 pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 446.0 bits (1146), Expect = 2.7e-121
Identity = 219/249 (87.95%), Postives = 233/249 (93.57%), Query Frame = 0


Query: 1   VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 60
           + CVLST+PHKEHHQ+PPWQLQDQLLYSVSSILSNSSLDSSKCRAL PHLSP +FD++FF
Sbjct: 22  LACVLSTQPHKEHHQEPPWQLQDQLLYSVSSILSNSSLDSSKCRALFPHLSPLEFDRMFF 81

Query: 61  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 120
           SVGLKANPKTCLNFFYFASDSFKFRFTIRSYC+LILLL++SKFLPPARLLLIRLIDGKLP
Sbjct: 82  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCILILLLINSKFLPPARLLLIRLIDGKLP 141

Query: 121 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 180
           +LN D NKLHIEIAN L GLTSVVGRFE T AFDLLIHVYSTQFRNLGF  A D FYLFA
Sbjct: 142 LLNFDLNKLHIEIANTLLGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFGCAFDAFYLFA 201

Query: 181 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 240
           + GIFPSLKTCNFLLSSLVKANELEKCCEVFEVMS+GVRPDVFLFTNVINALCKGGKMEN
Sbjct: 202 QKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSRGVRPDVFLFTNVINALCKGGKMEN 261

Query: 241 AMELLMNME 250
           A+EL + ME
Sbjct: 262 AIELFLKME 270

[Close]

BLAST of Carg11430 vs. TAIR10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 209.5 bits (532), Expect = 7.8e-54
Identity = 112/221 (50.68%), Postives = 146/221 (66.06%), Query Frame = 0


Query: 29  VSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTI 88
           +SS+LS  SLD  +C+ L+  LSP +FD+LF     K NPKT L+FF  ASDSF F F++
Sbjct: 67  LSSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFFRLASDSFSFSFSL 126

Query: 89  RSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFE 148
           RSYCLLI LL+ +  L  AR++LIRLI+G +PVL        + IA+ +  L+       
Sbjct: 127 RSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEI 186

Query: 149 CTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFARNGIFPSLKTCNFLLSSLVKANELEKCC 208
                DLLI VY TQF+  G   A+DVF + A  G+FPS  TCN LL+SLV+ANE +KCC
Sbjct: 187 RRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCC 246

Query: 209 EVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNME 250
           E F+V+ +GV PDV+LFT  INA CKGGK+E A++L   ME
Sbjct: 247 EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKME 287

[Close]

BLAST of Carg11430 vs. TAIR10
Match: AT1G66345.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-06
Identity = 56/232 (24.14%), Postives = 104/232 (44.83%), Query Frame = 0


Query: 16  DPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFF 75
           +P  Q Q  + Y   S+ SN + ++   +     LS    + +          K  L+FF
Sbjct: 41  NPNKQQQILIDYISKSLQSNDTWETLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFF 100

Query: 76  YFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIAN 135
           +++S +   R  I+SY L I +LV ++ L  AR L+      +  +LNS  +   ++   
Sbjct: 101 HWSSHTRNLRHGIKSYALTIHILVKARLLIDARALI------ESSLLNSPPDSDLVDSLL 160

Query: 136 ELFGLTSVVGRFECTHAFDLLIHVYS-TQFRNLGFSYAVDVFYLFARNGIFPSLKTCNFL 195
           + + ++S          FDLL+  Y+  ++  LGF    DVF      G   S+ T N L
Sbjct: 161 DTYEISS-----STPLVFDLLVQCYAKIRYLELGF----DVFKRLCDCGFTLSVITLNTL 220

Query: 196 LSSLVKANELEKCCEVFE-VMSQGVRPDVFLFTNVINALCKGGKMENAMELL 246
           +    K+   +    ++E  + + + P+      +I  LCK G+++  ++LL
Sbjct: 221 IHYSSKSKIDDLVWRIYECAIDKRIYPNEITIRIMIQVLCKEGRLKEVVDLL 257

[Close]

BLAST of Carg11430 vs. Swiss-Prot
Match: sp|Q940A6|PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-52
Identity = 112/221 (50.68%), Postives = 146/221 (66.06%), Query Frame = 0


Query: 29  VSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTI 88
           +SS+LS  SLD  +C+ L+  LSP +FD+LF     K NPKT L+FF  ASDSF F F++
Sbjct: 80  LSSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFFRLASDSFSFSFSL 139

Query: 89  RSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFE 148
           RSYCLLI LL+ +  L  AR++LIRLI+G +PVL        + IA+ +  L+       
Sbjct: 140 RSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEI 199

Query: 149 CTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFARNGIFPSLKTCNFLLSSLVKANELEKCC 208
                DLLI VY TQF+  G   A+DVF + A  G+FPS  TCN LL+SLV+ANE +KCC
Sbjct: 200 RRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCC 259

Query: 209 EVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNME 250
           E F+V+ +GV PDV+LFT  INA CKGGK+E A++L   ME
Sbjct: 260 EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKME 300

[Close]

BLAST of Carg11430 vs. Swiss-Prot
Match: sp|Q3ECH5|PP107_ARATH (Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g66345 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-05
Identity = 56/232 (24.14%), Postives = 104/232 (44.83%), Query Frame = 0


Query: 16  DPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFF 75
           +P  Q Q  + Y   S+ SN + ++   +     LS    + +          K  L+FF
Sbjct: 41  NPNKQQQILIDYISKSLQSNDTWETLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFF 100

Query: 76  YFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIAN 135
           +++S +   R  I+SY L I +LV ++ L  AR L+      +  +LNS  +   ++   
Sbjct: 101 HWSSHTRNLRHGIKSYALTIHILVKARLLIDARALI------ESSLLNSPPDSDLVDSLL 160

Query: 136 ELFGLTSVVGRFECTHAFDLLIHVYS-TQFRNLGFSYAVDVFYLFARNGIFPSLKTCNFL 195
           + + ++S          FDLL+  Y+  ++  LGF    DVF      G   S+ T N L
Sbjct: 161 DTYEISS-----STPLVFDLLVQCYAKIRYLELGF----DVFKRLCDCGFTLSVITLNTL 220

Query: 196 LSSLVKANELEKCCEVFE-VMSQGVRPDVFLFTNVINALCKGGKMENAMELL 246
           +    K+   +    ++E  + + + P+      +I  LCK G+++  ++LL
Sbjct: 221 IHYSSKSKIDDLVWRIYECAIDKRIYPNEITIRIMIQVLCKEGRLKEVVDLL 257

[Close]

BLAST of Carg11430 vs. TrEMBL
Match: tr|A0A1S4DYY2|A0A1S4DYY2_CUCME (pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493057 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 3.9e-116
Identity = 213/249 (85.54%), Postives = 221/249 (88.76%), Query Frame = 0


Query: 1   VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 60
           + CV ST+PHKEHHQDPPWQ QDQL   VSS+LSNSSLDSSKC ALLPHLSPFQFDQLFF
Sbjct: 22  LACVSSTQPHKEHHQDPPWQSQDQLHLWVSSVLSNSSLDSSKCSALLPHLSPFQFDQLFF 81

Query: 61  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 120
           S+GLKANP TCLNFFYFASDSFKFRFTI SYC+LILLLVHSKFLPPARLLLIRLIDG LP
Sbjct: 82  SIGLKANPMTCLNFFYFASDSFKFRFTIHSYCILILLLVHSKFLPPARLLLIRLIDGNLP 141

Query: 121 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 180
           VLNSD  K HIEIAN LFGLTSVVGRFE T AFDLLIHVYSTQFRNLGF  A+DVFYL A
Sbjct: 142 VLNSDFKKFHIEIANALFGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFGCAIDVFYLLA 201

Query: 181 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 240
           R G FPSLKTCNFLLSSLVKANE EKCCEVF+VMS+GV PDVF FTNVINALCKGGKME 
Sbjct: 202 RKGTFPSLKTCNFLLSSLVKANEFEKCCEVFQVMSEGVCPDVFSFTNVINALCKGGKMEK 261

Query: 241 AMELLMNME 250
           A EL M ME
Sbjct: 262 ATELFMKME 270

[Close]

BLAST of Carg11430 vs. TrEMBL
Match: tr|A0A0A0L008|A0A0A0L008_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055990 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 210/249 (84.34%), Postives = 220/249 (88.35%), Query Frame = 0


Query: 1   VVCVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFF 60
           +VCV ST+PHKEHHQDPPWQ QDQL   VSS+LS+SSLDSSKC ALLPHLSP QFDQLFF
Sbjct: 22  LVCVSSTQPHKEHHQDPPWQSQDQLHLWVSSVLSHSSLDSSKCSALLPHLSPSQFDQLFF 81

Query: 61  SVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLP 120
           S+GLKANP TCLNFFYFAS+SFKFRFTI SYC LILLL+ SKF+PPARLLLIRLIDG LP
Sbjct: 82  SIGLKANPMTCLNFFYFASNSFKFRFTIHSYCTLILLLIRSKFIPPARLLLIRLIDGNLP 141

Query: 121 VLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFA 180
           VLN DS K HIEIAN LFGLTSVVGRFE T AFDLLIHVYSTQFRNLGFS AVDVFYL A
Sbjct: 142 VLNLDSEKFHIEIANALFGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLA 201

Query: 181 RNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMEN 240
           R G FPSLKTCNFLLSSLVKANE EKCCEVF VMS+G  PDVF FTNVINALCKGGKMEN
Sbjct: 202 RKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMEN 261

Query: 241 AMELLMNME 250
           A+EL M ME
Sbjct: 262 AIELFMKME 270

[Close]

BLAST of Carg11430 vs. TrEMBL
Match: tr|A0A2I4EPW0|A0A2I4EPW0_9ROSI (pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Juglans regia OX=51240 GN=LOC108991576 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.9e-71
Identity = 147/254 (57.87%), Postives = 183/254 (72.05%), Query Frame = 0


Query: 5   LSTEPHKEHHQDPPWQLQDQ---------LLYSVSSILSNSSLDSSKCRALLPHLSPFQF 64
           L  +P +  H+ PP QLQ Q         LL  VS+ILS  SLDSS C++++PHLSP +F
Sbjct: 35  LQEQPPQSQHR-PPLQLQRQSHSQPPNQSLLNWVSTILSKPSLDSSMCKSVIPHLSPSEF 94

Query: 65  DQLFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLI 124
           DQ+F S+    NPKT LNFFYFAS++F+F FT+RSYCLLI LL+ S  + PARLLLIRLI
Sbjct: 95  DQIFLSLKSNLNPKTTLNFFYFASEAFRFPFTVRSYCLLIRLLIVSNLVSPARLLLIRLI 154

Query: 125 DGKLPVLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDV 184
           DGK+PVL + +   H+EIA  +  L     R     A D+L+HVY TQF+NLGF +A+DV
Sbjct: 155 DGKMPVLFASTKNRHVEIATMMADLNLPSERVLGVQALDMLVHVYCTQFKNLGFGFAIDV 214

Query: 185 FYLFARNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKG 244
           F L A  G+FPSLKTCNF LSSLVKANEL+K CEVFEVM +GV PDV+L +  INALCKG
Sbjct: 215 FRLSASKGMFPSLKTCNFFLSSLVKANELQKSCEVFEVMCRGVSPDVYLLSTAINALCKG 274

Query: 245 GKMENAMELLMNME 250
           GK+E+A+ L + ME
Sbjct: 275 GKVEDAIGLFLKME 287

[Close]

BLAST of Carg11430 vs. TrEMBL
Match: tr|A0A2R6Q321|A0A2R6Q321_ACTCH (Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22622 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.2e-70
Identity = 149/258 (57.75%), Postives = 177/258 (68.60%), Query Frame = 0


Query: 1   VVCVLSTEP-HKE--------HHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLS 60
           + CV ST P H++        H Q+ P  L    L  V+SILSN SLDSSKC  +L HL+
Sbjct: 21  LTCVSSTAPEHRQTEQSQPSWHQQNQPKPLDQSFLNWVTSILSNKSLDSSKCTDILTHLT 80

Query: 61  PFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLL 120
           P QFD L F +    NPKT LNFF+FASDS  +RFT+RSYCLLI LL+ SKF+ PARLLL
Sbjct: 81  PHQFDSLLFDIRFNVNPKTVLNFFHFASDSCGYRFTVRSYCLLIRLLLFSKFVAPARLLL 140

Query: 121 IRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSY 180
           IRLID KLPVL +D    H+E+A  L  L            FDLLIHVY TQF+NLGF  
Sbjct: 141 IRLIDWKLPVLFNDPKNRHLEVATALAELNLGSELALSVQTFDLLIHVYCTQFKNLGFED 200

Query: 181 AVDVFYLFARNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINA 240
            VDVF L A  G+FPSL TCNFLLSSLVKANEL+K  EVF+++ +GV PDV+LF+  INA
Sbjct: 201 VVDVFRLLATKGMFPSLNTCNFLLSSLVKANELQKSYEVFDIICRGVSPDVYLFSTAINA 260

Query: 241 LCKGGKMENAMELLMNME 250
            CKGGK+E+AM L + ME
Sbjct: 261 FCKGGKVEDAMGLFLKME 278

[Close]

BLAST of Carg11430 vs. TrEMBL
Match: tr|M5WX26|M5WX26_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001463mg PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.1e-69
Identity = 142/246 (57.72%), Postives = 183/246 (74.39%), Query Frame = 0


Query: 11  KEHHQDPPWQL------QDQLLYS-VSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVG 70
           KE  Q PP Q+       +Q L++ VSSILS  SLDSSKC+AL+P LS  +FD++F S+ 
Sbjct: 32  KEPPQPPPLQVXXXXXPPNQSLHNWVSSILSKPSLDSSKCKALIPLLSSHEFDRVFCSIS 91

Query: 71  LKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLN 130
              NPKT L+FFYFAS+SFKF+FT+RS+C+L+ LL+ S  + PARLLLIRLIDG +PVL 
Sbjct: 92  SNVNPKTALHFFYFASESFKFQFTVRSFCVLVRLLILSNLVSPARLLLIRLIDGNVPVLY 151

Query: 131 SDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFARNG 190
           ++ N+ H+EIA  +  L +V  +     A DLLIHVY TQF+N+GF YA+D F +F++ G
Sbjct: 152 ANHNQRHMEIAIAMLDLNTVSTQGLGVQALDLLIHVYCTQFKNMGFGYAIDAFVIFSKKG 211

Query: 191 IFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMENAME 250
           +FPSLKTCNFLLSSLVKANEL K  +VFEVM +GV PDV+LFT  INA CKGGK+++A+ 
Sbjct: 212 VFPSLKTCNFLLSSLVKANELHKSYDVFEVMCRGVSPDVYLFTTAINAFCKGGKVDDAIG 271

The following BLAST results are available for this feature:

BLAST of Carg11430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931380.1	1.0e-136	99.20	pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur...	[more]
XP_022984601.1	1.5e-135	98.80	pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur...	[more]
XP_023552294.1	5.6e-135	98.39	pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur...	[more]
XP_023542002.1	7.1e-122	88.35	pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur...	[more]
XP_022942543.1	2.7e-121	87.95	pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Cucur...	[more]

BLAST of Carg11430 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19440.1	7.8e-54	50.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G66345.1	1.6e-06	24.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg11430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q940A6\|PP325_ARATH	1.4e-52	50.68	Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop...	[more]
sp\|Q3ECH5\|PP107_ARATH	2.9e-05	24.14	Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidop...	[more]

BLAST of Carg11430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DYY2\|A0A1S4DYY2_CUCME	3.9e-116	85.54	pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1 ...	[more]
tr\|A0A0A0L008\|A0A0A0L008_CUCSA	1.1e-113	84.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055990 PE=4 SV=1	[more]
tr\|A0A2I4EPW0\|A0A2I4EPW0_9ROSI	2.9e-71	57.87	pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Juglans ...	[more]
tr\|A0A2R6Q321\|A0A2R6Q321_ACTCH	4.2e-70	57.75	Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensi...	[more]
tr\|M5WX26\|M5WX26_PRUPE	6.1e-69	57.72	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001463mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11430-RA	Carg11430-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 190..214 e-value: 0.068 score: 13.3 coord: 469..498 e-value: 2.5E-6 score: 27.2 coord: 436..462 e-value: 0.01 score: 16.0 coord: 574..601 e-value: 8.7E-6 score: 25.5
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 217..249 e-value: 2.6E-7 score: 30.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 471..501 e-value: 2.2E-7 score: 28.6 coord: 328..361 e-value: 6.7E-9 score: 33.4 coord: 363..396 e-value: 9.8E-4 score: 17.1 coord: 190..221 e-value: 3.9E-4 score: 18.4 coord: 538..569 e-value: 7.8E-7 score: 26.9 coord: 573..606 e-value: 4.6E-7 score: 27.6 coord: 608..642 e-value: 7.2E-9 score: 33.3 coord: 678..711 e-value: 2.1E-6 score: 25.5 coord: 293..327 e-value: 3.0E-8 score: 31.3 coord: 503..537 e-value: 8.8E-10 score: 36.2 coord: 713..747 e-value: 2.3E-11 score: 41.2 coord: 644..677 e-value: 6.9E-9 score: 33.3 coord: 258..291 e-value: 2.5E-8 score: 31.6 coord: 224..257 e-value: 3.7E-6 score: 24.8 coord: 748..781 e-value: 2.0E-6 score: 25.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 745..792 e-value: 1.3E-12 score: 47.6 coord: 255..304 e-value: 3.1E-17 score: 62.4 coord: 606..654 e-value: 6.9E-15 score: 54.9 coord: 501..549 e-value: 3.8E-16 score: 58.9 coord: 325..374 e-value: 2.4E-15 score: 56.3 coord: 675..724 e-value: 3.5E-16 score: 59.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 606..640 score: 12.364
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 466..500 score: 11.674
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 676..710 score: 11.488
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 291..325 score: 11.433
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 536..570 score: 11.553
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 571..605 score: 10.928
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 361..395 score: 9.438
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 711..745 score: 14.184
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 256..290 score: 13.263
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 641..675 score: 12.441
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 431..465 score: 8.035
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 149..186 score: 5.437
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 746..780 score: 11.181
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 396..430 score: 8.199
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 187..217 score: 7.355
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 221..255 score: 12.057
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 326..360 score: 13.252
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 501..535 score: 13.482
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 321..389 e-value: 6.9E-18 score: 66.8 coord: 670..739 e-value: 1.2E-21 score: 79.0 coord: 29..247 e-value: 1.3E-16 score: 62.6 coord: 531..600 e-value: 4.0E-19 score: 70.8 coord: 601..669 e-value: 5.1E-18 score: 67.2 coord: 390..458 e-value: 6.2E-7 score: 31.0 coord: 740..798 e-value: 2.3E-14 score: 55.3 coord: 459..530 e-value: 7.0E-20 score: 73.3 coord: 248..320 e-value: 2.0E-23 score: 84.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 437..472 coord: 201..283 coord: 544..608
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 8..754 coord: 740..792
None	No IPR available	PANTHER	PTHR24015:SF1067	SUBFAMILY NOT NAMED	coord: 8..754 coord: 740..792
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 304..526

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11430	Cla005467	Watermelon (97103) v1	carwmB0652
Carg11430	Csa4G055990	Cucumber (Chinese Long) v2	carcuB0677
Carg11430	MELO3C016242	Melon (DHL92) v3.5.1	carmeB0652
Carg11430	ClCG07G011220	Watermelon (Charleston Gray)	carwcgB0637
Carg11430	CSPI04G06820	Wild cucumber (PI 183967)	carcpiB0687
Carg11430	Cucsa.114620	Cucumber (Gy14) v1	carcgyB0731
Carg11430	CmaCh04G005940	Cucurbita maxima (Rimu)	carcmaB0927
Carg11430	CmaCh16G005160	Cucurbita maxima (Rimu)	carcmaB0924
Carg11430	CmoCh16G005620	Cucurbita moschata (Rifu)	carcmoB0898
Carg11430	CmoCh04G006340	Cucurbita moschata (Rifu)	carcmoB0902
Carg11430	Lsi07G007650	Bottle gourd (USVL1VR-Ls)	carlsiB596
Carg11430	Cp4.1LG01g01300	Cucurbita pepo (Zucchini)	carcpeB0929
Carg11430	Cp4.1LG14g02900	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11430	MELO3C016242.2	Melon (DHL92) v3.6.1	carmedB0663
Carg11430	CsaV3_4G007030	Cucumber (Chinese Long) v3	carcucB0689
Carg11430	Cla97C07G137960	Watermelon (97103) v2	carwmbB0682

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11430	Carg13153	Silver-seed gourd	carcarB050

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11430	Wax gourd	carwgoB0770
Carg11430	Silver-seed gourd	carcarB052
Carg11430	Cucumber (Gy14) v2	carcgybB0652