Carg13028 (gene) Silver-seed gourd

Overview
NameCarg13028
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAP complex subunit sigma
LocationCucurbita_argyrosperma_scaffold_052 : 722806 .. 723754 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGGTAAGCCCTCGTGTTCGATCTGAGATTATGTCTTCCGAACTTCGTTTGCCTTATCGTTTCTTTTGGGAGTTTATATTCTCGACGAGTTTCCTTTTCATCTATCAACGGATAAAAACTGTTTCTTGTTCAAAAGAAATGTGAGATTATGGGTTCTGAATGATGTTTCCTTCATGGATTTTACTGAATTGTCCGATTGACTTGCAGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTATAATGTTTGGTGCAAAATCTTGGCTGTCCTTATACTGTACGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACCTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTCGTGATTTGATAATACAATTTTTAATACCAGGGTTTCAATCTTTGATAATATATTTATGAAATATCAGATTCGATTCTTCTTAAGTCGATGAGAATAGGTTTAGGCTCGACTAGATTTAGAAATTCGTTAGGACGTTTACGAGGCTATTCTTCACGATGGGAATGAATTTTTGTTCATTTTCTCAGTAAATAACTTATCTTTGTTCATTTTTTTCGTTACGACTAAAAATTTAGATATTCATTAAGACCTTTAGGAGGCTGTTCTTCACTTTACAAATTTATTTTTGTTTTTTGT

mRNA sequence

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTATAATGTTTGGTGCAAAATCTTGGCTGTCCTTATACTGTACGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACCTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTCGTGATTTGATAATACAATTTTTAATACCAGGGTTTCAATCTTTGATAATATATTTATGAAATATCAGATTCGATTCTTCTTAAGTCGATGAGAATAGGTTTAGGCTCGACTAGATTTAGAAATTCGTTAGGACGTTTACGAGGCTATTCTTCACGATGGGAATGAATTTTTGTTCATTTTCTCAGTAAATAACTTATCTTTGTTCATTTTTTTCGTTACGACTAAAAATTTAGATATTCATTAAGACCTTTAGGAGGCTGTTCTTCACTTTACAAATTTATTTTTGTTTTTTGT

Coding sequence (CDS)

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGA

Protein sequence

MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Homology
[Close]
BLAST of Carg13028 vs. NCBI nr
Match: XP_004135683.1 (PREDICTED: AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 complex subunit sigma [Cucumis melo] >XP_022960614.1 AP-4 complex subunit sigma [Cucurbita moschata] >XP_022987894.1 AP-4 complex subunit sigma [Cucurbita maxima] >XP_023515579.1 AP-4 complex subunit sigma [Cucurbita pepo subsp. pepo] >KGN66196.1 hypothetical protein Csa_1G575120 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]
BLAST of Carg13028 vs. NCBI nr
Match: XP_022144808.1 (AP-4 complex subunit sigma [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]
BLAST of Carg13028 vs. NCBI nr
Match: XP_006451356.1 (AP-4 complex subunit sigma [Citrus clementina] >XP_006475361.1 AP-4 complex subunit sigma [Citrus sinensis] >XP_024033931.1 AP-4 complex subunit sigma [Citrus clementina] >ESR64596.1 hypothetical protein CICLE_v10009831mg [Citrus clementina] >KDO55890.1 hypothetical protein CISIN_1g032296mg [Citrus sinensis] >GAY51238.1 hypothetical protein CUMW_132700 [Citrus unshiu])

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

[Close]
BLAST of Carg13028 vs. NCBI nr
Match: XP_010047647.1 (PREDICTED: AP-4 complex subunit sigma [Eucalyptus grandis] >KCW79591.1 hypothetical protein EUGRSUZ_C00951 [Eucalyptus grandis])

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-28
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NIL+P
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILTP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]
BLAST of Carg13028 vs. NCBI nr
Match: XP_012076827.1 (AP-4 complex subunit sigma isoform X2 [Jatropha curcas] >XP_020536629.1 AP-4 complex subunit sigma isoform X1 [Jatropha curcas] >KDP33768.1 hypothetical protein JCGZ_07339 [Jatropha curcas])

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-28
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNIL+P
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILAP 135

Query: 63  IQLMEKSS 71
           IQLM+KSS
Sbjct: 136 IQLMDKSS 143

[Close]
BLAST of Carg13028 vs. TAIR10
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 8.6e-31
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSP
Sbjct: 76  ENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135

Query: 63  IQLMEKS 70
           IQLM+K+
Sbjct: 136 IQLMDKA 142

[Close]
BLAST of Carg13028 vs. TAIR10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-12
Identity = 30/66 (45.45%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E+V  G ++ETS + ++  
Sbjct: 80  ENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKA 139

Query: 63  IQLMEK 69
           ++ + K
Sbjct: 140 VEEISK 145

[Close]
BLAST of Carg13028 vs. TAIR10
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-11
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G + ETSK  I+  +
Sbjct: 76  NELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERM 135

Query: 64  QLMEK 69
             +EK
Sbjct: 136 SELEK 140

[Close]
BLAST of Carg13028 vs. TAIR10
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 63.2 bits (152), Expect = 7.6e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I
Sbjct: 76  NELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

Query: 64  QLMEK 69
              ++
Sbjct: 136 SAQDQ 140

[Close]
BLAST of Carg13028 vs. TAIR10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 63.2 bits (152), Expect = 7.6e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I
Sbjct: 76  NELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

Query: 64  QLMEK 69
              ++
Sbjct: 136 SAQDQ 140

[Close]
BLAST of Carg13028 vs. Swiss-Prot
Match: sp|O82201|AP4S_ARATH (AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-29
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSP
Sbjct: 76  ENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135

Query: 63  IQLMEKS 70
           IQLM+K+
Sbjct: 136 IQLMDKA 142

[Close]
BLAST of Carg13028 vs. Swiss-Prot
Match: sp|Q9Y587|AP4S1_HUMAN (AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKMS 142

[Close]
BLAST of Carg13028 vs. Swiss-Prot
Match: sp|Q3ZBB6|AP4S1_BOVIN (AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKMS 142

[Close]
BLAST of Carg13028 vs. Swiss-Prot
Match: sp|Q9WVL1|AP4S1_MOUSE (AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.7e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKLS 142

[Close]
BLAST of Carg13028 vs. Swiss-Prot
Match: sp|Q9P7N2|AP1S1_SCHPO (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vas2 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 32/60 (53.33%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL ILE IH  VE +D++FGNVCELD++F+ EKA++++EE+++ G + E+SK+N+LS +
Sbjct: 77  NELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAV 136

[Close]
BLAST of Carg13028 vs. TrEMBL
Match: tr|A0A1S3BQ09|A0A1S3BQ09_CUCME (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]
BLAST of Carg13028 vs. TrEMBL
Match: tr|A0A0A0M1T6|A0A0A0M1T6_CUCSA (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]
BLAST of Carg13028 vs. TrEMBL
Match: tr|V4UQ46|V4UQ46_9ROSI (AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10009831mg PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

[Close]
BLAST of Carg13028 vs. TrEMBL
Match: tr|A0A2H5PFW1|A0A2H5PFW1_CITUN (AP complex subunit sigma OS=Citrus unshiu OX=55188 GN=CUMW_132700 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

[Close]
BLAST of Carg13028 vs. TrEMBL
Match: tr|A0A067EPS3|A0A067EPS3_CITSI (AP complex subunit sigma OS=Citrus sinensis OX=2711 GN=CISIN_1g032296mg PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

The following BLAST results are available for this feature:
BLAST of Carg13028 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135683.18.6e-2998.53PREDICTED: AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTE... [more]
XP_022144808.18.6e-2998.53AP-4 complex subunit sigma [Momordica charantia][more]
XP_006451356.13.3e-2897.06AP-4 complex subunit sigma [Citrus clementina] >XP_006475361.1 AP-4 complex subu... [more]
XP_010047647.14.3e-2895.59PREDICTED: AP-4 complex subunit sigma [Eucalyptus grandis] >KCW79591.1 hypotheti... [more]
XP_012076827.14.3e-2895.59AP-4 complex subunit sigma isoform X2 [Jatropha curcas] >XP_020536629.1 AP-4 com... [more]
BLAST of Carg13028 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19790.18.6e-3192.54SNARE-like superfamily protein[more]
AT3G50860.12.3e-1245.45Clathrin adaptor complex small chain family protein[more]
AT1G47830.13.4e-1147.69SNARE-like superfamily protein[more]
AT2G17380.17.6e-1143.08associated protein 19[more]
AT4G35410.27.6e-1143.08Clathrin adaptor complex small chain family protein[more]
BLAST of Carg13028 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82201|AP4S_ARATH1.5e-2992.54AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=... [more]
sp|Q9Y587|AP4S1_HUMAN2.6e-1655.88AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1[more]
sp|Q3ZBB6|AP4S1_BOVIN4.4e-1655.88AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1[more]
sp|Q9WVL1|AP4S1_MOUSE5.7e-1655.88AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1[more]
sp|Q9P7N2|AP1S1_SCHPO1.0e-1253.33AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of Carg13028 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQ09|A0A1S3BQ09_CUCME5.7e-2998.53AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1[more]
tr|A0A0A0M1T6|A0A0A0M1T6_CUCSA5.7e-2998.53AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1[more]
tr|V4UQ46|V4UQ46_9ROSI2.2e-2897.06AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10009831mg PE=3... [more]
tr|A0A2H5PFW1|A0A2H5PFW1_CITUN2.2e-2897.06AP complex subunit sigma OS=Citrus unshiu OX=55188 GN=CUMW_132700 PE=3 SV=1[more]
tr|A0A067EPS3|A0A067EPS3_CITSI2.2e-2897.06AP complex subunit sigma OS=Citrus sinensis OX=2711 GN=CISIN_1g032296mg PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13028-RACarg13028-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 3..68
e-value: 9.0E-21
score: 74.2
NoneNo IPR availableGENE3DG3DSA:3.30.450.60coord: 2..70
e-value: 2.3E-27
score: 97.5
NoneNo IPR availablePANTHERPTHR11753:SF4AP-4 COMPLEX SUBUNIT SIGMA-1coord: 3..69
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 3..69
IPR011012Longin-like domain superfamilySUPERFAMILYSSF64356SNARE-likecoord: 4..66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13028Cla011245Watermelon (97103) v1carwmB0090
Carg13028Csa1G575120Cucumber (Chinese Long) v2carcuB0101
Carg13028MELO3C015429Melon (DHL92) v3.5.1carmeB0096
Carg13028ClCG03G015970Watermelon (Charleston Gray)carwcgB0094
Carg13028CSPI01G27720Wild cucumber (PI 183967)carcpiB0106
Carg13028Cucsa.288650Cucumber (Gy14) v1carcgyB0114
Carg13028CmaCh10G006840Cucurbita maxima (Rimu)carcmaB0119
Carg13028CmoCh10G007120Cucurbita moschata (Rifu)carcmoB0128
Carg13028Cp4.1LG18g03930Cucurbita pepo (Zucchini)carcpeB0138
Carg13028MELO3C015429.2Melon (DHL92) v3.6.1carmedB0098
Carg13028CsaV3_1G039990Cucumber (Chinese Long) v3carcucB0109
Carg13028Cla97C03G066270Watermelon (97103) v2carwmbB0094
Carg13028Bhi02G001610Wax gourdcarwgoB0110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg13028Watermelon (97103) v2carwmbB0093
Carg13028Watermelon (97103) v2carwmbB0096
Carg13028Wax gourdcarwgoB0106
Carg13028Wax gourdcarwgoB0107
Carg13028Silver-seed gourdcarcarB038
Carg13028Silver-seed gourdcarcarB102
Carg13028Silver-seed gourdcarcarB104
Carg13028Silver-seed gourdcarcarB108
Carg13028Cucumber (Gy14) v2carcgybB0101
Carg13028Cucumber (Gy14) v2carcgybB0102
Carg13028Cucumber (Gy14) v1carcgyB0111
Carg13028Cucurbita maxima (Rimu)carcmaB0120
Carg13028Cucurbita maxima (Rimu)carcmaB0121
Carg13028Cucurbita maxima (Rimu)carcmaB0124
Carg13028Cucurbita maxima (Rimu)carcmaB0125
Carg13028Cucurbita moschata (Rifu)carcmoB0129
Carg13028Cucurbita moschata (Rifu)carcmoB0130
Carg13028Cucurbita moschata (Rifu)carcmoB0132
Carg13028Cucurbita moschata (Rifu)carcmoB0134
Carg13028Cucurbita pepo (Zucchini)carcpeB0135
Carg13028Cucurbita pepo (Zucchini)carcpeB0140
Carg13028Cucurbita pepo (Zucchini)carcpeB0141
Carg13028Cucurbita pepo (Zucchini)carcpeB0143
Carg13028Wild cucumber (PI 183967)carcpiB0107
Carg13028Cucumber (Chinese Long) v2carcuB0102
Carg13028Cucumber (Chinese Long) v3carcucB0110
Carg13028Bottle gourd (USVL1VR-Ls)carlsiB083
Carg13028Bottle gourd (USVL1VR-Ls)carlsiB086
Carg13028Bottle gourd (USVL1VR-Ls)carlsiB087
Carg13028Melon (DHL92) v3.5.1carmeB0097
Carg13028Melon (DHL92) v3.6.1carmedB0099
Carg13028Watermelon (Charleston Gray)carwcgB0093
Carg13028Watermelon (97103) v1carwmB0091
Carg13028Watermelon (97103) v1carwmB0093