Cucsa.288650 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.288650
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAP-4 complex subunit sigma
Locationscaffold02698 : 201298 .. 204426 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTTGAATAATAAAAAATAAAATAATTCGGGAGATTAGTTCTTGGTGTTGGGGATCGATTAAGGGGGATTTTTGGTCGCCGGCGAGAGTCTCATCGAGATTGTGAGAAGCAGAATGGGGATCAGATTCATTCTCATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTTGAAGAACGTCGAGCTCTTGAGGGTGAAATTGTTCGCAAATGTCTCGCTCGTAACGAACAACAGGTAATTTTTTTGTGAAAAAAGTTGGATTCTTTTATCTAGATCTCAATCCAATACCTCTGAATTTCTCTTCCATATCATCTGAGTCCTTCGATTGTTTTGAATTTCTCTTGATCTGTAAATTAAATTCAAATTCTGGAATTTTACGCTGCACTTGACCCTAGGTACTGTTAGAGTGCAATCAAAGTCTTATTAGTTTTACAAAGGAAGTGATCATGGATGGATGTGTAAGTGAGGCCAATTTTTTTCTATTTGTATAGGGTCTTTTAGGGTGGTAGCAAGGGTTTGTACTCTAATTGGGCAATATCATCGTATTGTGGACTTGGGTGGAGATTGCATAGTAGTACGTCTTATGGATGGATTTTTCAGGTCAGACAAAAATGAGTGATACTTTGTTCGAGGGAGGATTGTTAGGAGGATAAAAATGTAATCATATTGGTTAGGGAAGGAAGTGATTGTATGTCTACATGTGAGGACAATTTTTTCTATTGGTATGAGGTCGTCAAGGGTTTATGCCTAAGGTCGACAATTTTTTCTGTGTGGGTGGGATCCTCAACGATTTCAAACAAAAATAGTGAGTTTGTTGAATCCCCAGATCGGGCCAAAAGTGTTTAAAGCAGCAAGGAAATATTAACTCTATCAAGATCACTGATAAAGGAGTAGCTACTTGTCTAGGGGAGGAGATTAAGGGTGCCACAAGTGGTTGATTGATCCCCAAAACATTCCATAGAAAGCCCCACATTGGTTAGGAAGGAGAGTGATCGTGATATATAAGTGAGAACAACTATCTTCATTGGTATTGAATTTTGGATAGTACTAAGAATAGAGTTATGAAGATTTATGCTCAAAGTAGACTGTAGCATACCATTGTGGAGATGAGGTGAAATTTATGTTGTCCTTATTAGGTACTAACATGTTATTTGTTATCTCTAGTGTCAGTAAAATTTCTCTTTGGGTGCACTAAGTTGAACGCAAATTGGAAATATGAGCTAGAACTGGTCACTAGTTGACTCTGGATTGCTGATCTAGATGATATTGCACTTTATGTTGTGAAAGTGATATGTAGCACTTGAAACCATTTAGTTTGCATCTAATTTCGTAGATGTTTTATTGGATCAATCATCTTCTATTTCAGCATCTGATTCTGGTTAATTTGCACGAGCAGTGTTATCTATGTTCCCTTACATTAGTGTTGGTACTCAAATCTACAGTATGATTTTCATTTACTCAGATGAATAATTTGGAGTTTCATGAGCCACTGTCTACCAAATACTATGATATCTAATCCATTTCTTTCCCTGGAATGAACTGCATAAGAGGAAGCAATGTTAAAGAAAGAAATCGATAAACTAACTAAATATGGTGTGCAGCCAGGTTTTCCGGGTTGACCATAACAAGCAACAGTCATGCAACTGCACTTTCCTTGCTTTGGTCGAAAAGATTAATCTTGTACAACTTTTAGGAAGCTATCGTATCGTATGAATATTAGTGACGTTCATTTATTTTCTTGGTATCCTAACCTGTGTTCTGTTTTTTATCCTCTTTGAGGAACGGATTTTGTTGCCATTGGAGCTTCACTTACAATATTTTCTTTGGAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATACGCATCTCTGTTTTTTCTGGTTGGAGTTGACAACGACGAAGTAAGTTAATCTGTCCATCCTCTACTATTGATAATTTATTTATCAACTTATTCTATCCTTTTGTTTGGCAGTGATCAGTATACCATCATATAAATTAAATGCTTAATAACCAAATGAGTTTATTGTGACCTGGTTTGTGGAATCTATGAGTTGAAATTGAAAACGCATGTGCTTATGTGCTATGAGTGTTAATTCGAGAGCTTCTAGATGTCACTGTTAGACCTTGCTTATTGCTTCTGTATTTACACCTGCCTCTATTAAAATGCTTAGATGGGTTAGGTGCATTAGAGACGAGTCCTAAAAAATAGTCGTTAAGTTTTAGATGGGGTACAGAATGGAGCTTTAATTTTTCTTTTTGATTCCTCTCTCAAACATCCACTTTCCCTTTCTTGTTATCTCAATGTTGCAGAATGAACTGGCAATTTTGGAATTCATTCACCTTTTGGTTGAGACCATGGACCGTCATTTTGGGAATGTGGTAAGCCCTCGTGTTCGATCCAAGAATATATCTTATAAACTTCGTTTTCTTTTTCGTTCTCTTTCTTGGGAGATTGTATCCATAAACAATTTCCTTTTCATATAGTCTTCTAAATGATGTTTTCCCTATGAGTTTTGCTGAATTGTTGAATTGGTTTACGACCTTATTTGAACAAGACCTGTTCTATTGATTGTACAACTGTATTTTGAGTTCTAAAATGAATCTTCGGATTGATTTGCAGTGTGAGCTAGATATAATGTTCCATCTAGAGAAAGCACATTTCATGCTGGAGGAGATGGTCATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTCTATCCCCAATTCAACTGATGGAGAAATCATCATGAAAGTCTACCACTTGTTTTCTTTGGTGCAAAATCTTGGCTCTCTTTATACAGTACTTCATTAAGGTATAAGATTAATGTCGATGAATTCGTTTGATGACGTTCAAAATGAGTAAATATTTTGAGTCTACTCCCATCTTGATGAATTCCTTCAATCACTTGGAGATTTTTTTTTAAAGTTTATGACGTGTTAATTTGTAATGTGTGCACAAAGATGGATGGATGCAATTTGAAATGCTCCCAACACCAATCCATTATTATGTATGTTCTCAAAGCTCTAGGATCCATTTAAATTGATGAGTTTAATCAATGAAATTTTTGGCTTGGCTATTTGGTT

mRNA sequence

TGTTTTGaataataaaaaataaaataattCGGGAGATTAGTTCTTGGTGTTGGGGATCGATTAAGGGGGATTTTTGGTCGCCGGCGAGAGTCTCATCGAGATTGTGAGAAGCAGAATGGGGATCAGATTCATTCTCATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTTGAAGAACGTCGAGCTCTTGAGGGTGAAATTGTTCGCAAATGTCTCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATACGCATCTCTGTTTTTTCTGGTTGGAGTTGACAACGACGAAAATGAACTGGCAATTTTGGAATTCATTCACCTTTTGGTTGAGACCATGGACCGTCATTTTGGGAATGTGTGTGAGCTAGATATAATGTTCCATCTAGAGAAAGCACATTTCATGCTGGAGGAGATGGTCATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTCTATCCCCAATTCAACTGATGGAGAAATCATCATGAAAGTCTACCACTTGTTTTCTTTGGTGCAAAATCTTGGCTCTCTTTATACAGTACTTCATTAAGGTATAAGATTAATGTCGATGAATTCGTTTGATGACGTTCAAAATGAGTAAATATTTTGAGTCTACTCCCATCTTGATGAATTCCTTCAATCACTTGGAGATTTTTTTTTAAAGTTTATGACGTGTTAATTTGTAATGTGTGCACAAAGATGGATGGATGCAATTTGAAATGCTCCCAACACCAATCCATTATTATGTATGTTCTCAAAGCTCTAGGATCCATTTAAATTGATGAGTTTAATCAATGAAATTTTTGGCTTGGCTATTTGGTT

Coding sequence (CDS)

ATGGGGATCAGATTCATTCTCATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTTGAAGAACGTCGAGCTCTTGAGGGTGAAATTGTTCGCAAATGTCTCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATACGCATCTCTGTTTTTTCTGGTTGGAGTTGACAACGACGAAAATGAACTGGCAATTTTGGAATTCATTCACCTTTTGGTTGAGACCATGGACCGTCATTTTGGGAATGTGTGTGAGCTAGATATAATGTTCCATCTAGAGAAAGCACATTTCATGCTGGAGGAGATGGTCATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTCTATCCCCAATTCAACTGATGGAGAAATCATCATGA

Protein sequence

MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS*
Homology
[Close]
BLAST of Cucsa.288650 vs. Swiss-Prot
Match: AP4S_ARATH (AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.0e-72
Identity = 134/142 (94.37%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKS 143
           NGCIVETSK+NILSPIQLM+K+
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142

[Close]
BLAST of Cucsa.288650 vs. Swiss-Prot
Match: AP4S1_HUMAN (AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-44
Identity = 77/141 (54.61%), Postives = 118/141 (83.69%), Query Frame = 1 

Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKSS 144
           CIVET+++ IL+P+ +++K S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

[Close]
BLAST of Cucsa.288650 vs. Swiss-Prot
Match: AP4S1_BOVIN (AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-44
Identity = 77/141 (54.61%), Postives = 118/141 (83.69%), Query Frame = 1 

Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKSS 144
           CIVET+++ IL+P+ +++K S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

[Close]
BLAST of Cucsa.288650 vs. Swiss-Prot
Match: AP4S1_MOUSE (AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-43
Identity = 77/141 (54.61%), Postives = 117/141 (82.98%), Query Frame = 1 

Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKSS 144
           CIVET+++ IL+P+ +++K S
Sbjct: 122 CIVETNRARILAPLLILDKLS 142

[Close]
BLAST of Cucsa.288650 vs. Swiss-Prot
Match: AP4S_DICDI (AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-41
Identity = 84/141 (59.57%), Postives = 111/141 (78.72%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M I++ L+VN +G+TRL+QYYE++  EER A+E EI+RKCL+R E QCSFVE+++YK++Y
Sbjct: 1   MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           R+YA+LFF+VGVD  ENELAILE IH  VE +D  F NV    IMF+L+KAHF+L+EMV 
Sbjct: 61  RKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVS 120

Query: 121 NGCIVETSKSNILSPIQLMEK 142
           NG IVE SK +IL  + L+ K
Sbjct: 121 NGDIVEISKQHILEFVNLLYK 137

[Close]
BLAST of Cucsa.288650 vs. TrEMBL
Match: A0A0A0M1T6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575120 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.7e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]
BLAST of Cucsa.288650 vs. TrEMBL
Match: B9H8U9_POPTR (Clathrin adaptor complex small chain family protein OS=Populus trichocarpa GN=POPTR_0006s15350g PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-72
Identity = 138/143 (96.50%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKI+Y
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNILSPIQLM+K+S
Sbjct: 121 NGCIVETSKSNILSPIQLMDKTS 143

[Close]
BLAST of Cucsa.288650 vs. TrEMBL
Match: A0A059CN22_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00951 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-72
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSK+NIL+PIQLMEKSS
Sbjct: 121 NGCIVETSKANILTPIQLMEKSS 143

[Close]
BLAST of Cucsa.288650 vs. TrEMBL
Match: V4UQ46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009831mg PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-72
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNILSPIQLMEK S
Sbjct: 121 NGCIVETSKSNILSPIQLMEKMS 143

[Close]
BLAST of Cucsa.288650 vs. TrEMBL
Match: A0A067EPS3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032296mg PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-72
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNILSPIQLMEK S
Sbjct: 121 NGCIVETSKSNILSPIQLMEKMS 143

[Close]
BLAST of Cucsa.288650 vs. TAIR10
Match: AT2G19790.1 (AT2G19790.1 SNARE-like superfamily protein)

HSP 1 Score: 273.9 bits (699), Expect = 5.8e-74
Identity = 134/142 (94.37%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKS 143
           NGCIVETSK+NILSPIQLM+K+
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142

[Close]
BLAST of Cucsa.288650 vs. TAIR10
Match: AT1G47830.1 (AT1G47830.1 SNARE-like superfamily protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 67/139 (48.20%), Postives = 95/139 (68.35%), Query Frame = 1 

Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA LFF V VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G
Sbjct: 62  YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121

Query: 123 CIVETSKSNILSPIQLMEK 142
            + ETSK  I+  +  +EK
Sbjct: 122 ELQETSKRAIIERMSELEK 140

[Close]
BLAST of Cucsa.288650 vs. TAIR10
Match: AT2G17380.1 (AT2G17380.1 associated protein 19)

HSP 1 Score: 127.1 bits (318), Expect = 8.8e-30
Identity = 58/139 (41.73%), Postives = 96/139 (69.06%), Query Frame = 1 

Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I F+L+V++QG+ RL ++Y   T +ER  +  E+    L R  + C+F+E R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D  +NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETSKSNILSPIQLMEK 142
            + E+SK  +   I   ++
Sbjct: 122 ELQESSKKTVARIISAQDQ 140

[Close]
BLAST of Cucsa.288650 vs. TAIR10
Match: AT4G35410.2 (AT4G35410.2 Clathrin adaptor complex small chain family protein)

HSP 1 Score: 127.1 bits (318), Expect = 8.8e-30
Identity = 58/139 (41.73%), Postives = 96/139 (69.06%), Query Frame = 1 

Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D ++NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETSKSNILSPIQLMEK 142
            + E+SK  +   I   ++
Sbjct: 122 ELQESSKKTVARIISAQDQ 140

[Close]
BLAST of Cucsa.288650 vs. TAIR10
Match: AT3G50860.1 (AT3G50860.1 Clathrin adaptor complex small chain family protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-25
Identity = 54/144 (37.50%), Postives = 96/144 (66.67%), Query Frame = 1 

Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNY-----K 62
           I+ ++M+N QG+ RLA++Y+ L +E+++ L   +     +R E   +F+E  +      +
Sbjct: 2   IKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSR 61

Query: 63  IVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEE 122
           +VY+ YA+L+F++  D  ENELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E
Sbjct: 62  LVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDE 121

Query: 123 MVMNGCIVETSKSNILSPIQLMEK 142
           +V  G ++ETS + ++  ++ + K
Sbjct: 122 IVFGGQVLETSSAEVMKAVEEISK 145

[Close]
BLAST of Cucsa.288650 vs. NCBI nr
Match: gi|449435802|ref|XP_004135683.1| (PREDICTED: AP-4 complex subunit sigma [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]
BLAST of Cucsa.288650 vs. NCBI nr
Match: gi|1009162536|ref|XP_015899491.1| (PREDICTED: AP-4 complex subunit sigma [Ziziphus jujuba])

HSP 1 Score: 280.8 bits (717), Expect = 1.3e-72
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDN+ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNEENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNIL+PIQLM+KSS
Sbjct: 121 NGCIVETSKSNILAPIQLMDKSS 143

[Close]
BLAST of Cucsa.288650 vs. NCBI nr
Match: gi|743921300|ref|XP_011004712.1| (PREDICTED: AP-4 complex subunit sigma [Populus euphratica])

HSP 1 Score: 280.4 bits (716), Expect = 1.8e-72
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNILSPIQLM+K+S
Sbjct: 121 NGCIVETSKSNILSPIQLMDKTS 143

[Close]
BLAST of Cucsa.288650 vs. NCBI nr
Match: gi|702293296|ref|XP_010047647.1| (PREDICTED: AP-4 complex subunit sigma [Eucalyptus grandis])

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSK+NIL+PIQLMEKSS
Sbjct: 121 NGCIVETSKANILTPIQLMEKSS 143

[Close]
BLAST of Cucsa.288650 vs. NCBI nr
Match: gi|224087999|ref|XP_002308286.1| (clathrin adaptor complex small chain family protein [Populus trichocarpa])

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 138/143 (96.50%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKI+Y
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 144
           NGCIVETSKSNILSPIQLM+K+S
Sbjct: 121 NGCIVETSKSNILSPIQLMDKTS 143

The following BLAST results are available for this feature:
BLAST of Cucsa.288650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AP4S_ARATH1.0e-7294.37AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=1 SV=1[more]
AP4S1_HUMAN1.5e-4454.61AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1[more]
AP4S1_BOVIN2.6e-4454.61AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1[more]
AP4S1_MOUSE1.7e-4354.61AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1[more]
AP4S_DICDI1.2e-4159.57AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1 PE=3 SV=1[more]
BLAST of Cucsa.288650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1T6_CUCSA7.7e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575120 PE=4 SV=1[more]
B9H8U9_POPTR1.6e-7296.50Clathrin adaptor complex small chain family protein OS=Populus trichocarpa GN=PO... [more]
A0A059CN22_EUCGR1.6e-7297.20Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00951 PE=4 SV=1[more]
V4UQ46_9ROSI2.1e-7297.90Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009831mg PE=4 SV=1[more]
A0A067EPS3_CITSI2.1e-7297.90Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032296mg PE=4 SV=1[more]
BLAST of Cucsa.288650 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19790.15.8e-7494.37 SNARE-like superfamily protein[more]
AT1G47830.11.6e-3148.20 SNARE-like superfamily protein[more]
AT2G17380.18.8e-3041.73 associated protein 19[more]
AT4G35410.28.8e-3041.73 Clathrin adaptor complex small chain family protein[more]
AT3G50860.12.9e-2537.50 Clathrin adaptor complex small chain family protein[more]
BLAST of Cucsa.288650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435802|ref|XP_004135683.1|1.1e-74100.00PREDICTED: AP-4 complex subunit sigma [Cucumis sativus][more]
gi|1009162536|ref|XP_015899491.1|1.3e-7297.20PREDICTED: AP-4 complex subunit sigma [Ziziphus jujuba][more]
gi|743921300|ref|XP_011004712.1|1.8e-7297.20PREDICTED: AP-4 complex subunit sigma [Populus euphratica][more]
gi|702293296|ref|XP_010047647.1|2.3e-7297.20PREDICTED: AP-4 complex subunit sigma [Eucalyptus grandis][more]
gi|224087999|ref|XP_002308286.1|2.3e-7296.50clathrin adaptor complex small chain family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015031protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006301 postreplication repair
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.288650.1Cucsa.288650.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 3..139
score: 6.87
IPR016635Adaptor protein complex, sigma subunitPIRPIRSF015588AP_complex_sigmacoord: 2..143
score: 3.3
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 2..141
score: 6.8E
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 3..141
score: 1.1
NoneNo IPR availableGENE3DG3DSA:3.30.450.60coord: 3..141
score: 9.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.288650Cla011245Watermelon (97103) v1cgywmB531
Cucsa.288650Csa1G575120Cucumber (Chinese Long) v2cgycuB414
Cucsa.288650MELO3C015429Melon (DHL92) v3.5.1cgymeB481
Cucsa.288650ClCG03G015970Watermelon (Charleston Gray)cgywcgB505
Cucsa.288650CSPI01G27720Wild cucumber (PI 183967)cgycpiB437
Cucsa.288650CmaCh10G006840Cucurbita maxima (Rimu)cgycmaB0810
Cucsa.288650CmoCh10G007120Cucurbita moschata (Rifu)cgycmoB0803
Cucsa.288650Lsi06G002360Bottle gourd (USVL1VR-Ls)cgylsiB471
Cucsa.288650Cp4.1LG18g03930Cucurbita pepo (Zucchini)cgycpeB0767
Cucsa.288650MELO3C015429.2Melon (DHL92) v3.6.1cgymedB480
Cucsa.288650CsaV3_1G039990Cucumber (Chinese Long) v3cgycucB446
Cucsa.288650Cla97C03G066270Watermelon (97103) v2cgywmbB506
Cucsa.288650Bhi02G001610Wax gourdcgywgoB589
Cucsa.288650Carg13028Silver-seed gourdcarcgyB0114
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.288650Watermelon (97103) v2cgywmbB505
Cucsa.288650Watermelon (97103) v2cgywmbB507
Cucsa.288650Wax gourdcgywgoB587
Cucsa.288650Wax gourdcgywgoB588
Cucsa.288650Cucumber (Gy14) v1cgycgyB067
Cucsa.288650Cucurbita maxima (Rimu)cgycmaB0811
Cucsa.288650Cucurbita maxima (Rimu)cgycmaB0813
Cucsa.288650Cucurbita maxima (Rimu)cgycmaB0814
Cucsa.288650Cucurbita moschata (Rifu)cgycmoB0805
Cucsa.288650Cucurbita moschata (Rifu)cgycmoB0807
Cucsa.288650Cucurbita moschata (Rifu)cgycmoB0808
Cucsa.288650Wild cucumber (PI 183967)cgycpiB438
Cucsa.288650Wild cucumber (PI 183967)cgycpiB439
Cucsa.288650Cucumber (Chinese Long) v2cgycuB415
Cucsa.288650Cucumber (Chinese Long) v2cgycuB416
Cucsa.288650Melon (DHL92) v3.5.1cgymeB482
Cucsa.288650Melon (DHL92) v3.5.1cgymeB483
Cucsa.288650Watermelon (Charleston Gray)cgywcgB503
Cucsa.288650Watermelon (Charleston Gray)cgywcgB506
Cucsa.288650Watermelon (97103) v1cgywmB532
Cucsa.288650Watermelon (97103) v1cgywmB534
Cucsa.288650Cucurbita pepo (Zucchini)cgycpeB0765
Cucsa.288650Cucurbita pepo (Zucchini)cgycpeB0768
Cucsa.288650Cucurbita pepo (Zucchini)cgycpeB0770
Cucsa.288650Bottle gourd (USVL1VR-Ls)cgylsiB470
Cucsa.288650Bottle gourd (USVL1VR-Ls)cgylsiB472
Cucsa.288650Melon (DHL92) v3.6.1cgymedB481
Cucsa.288650Melon (DHL92) v3.6.1cgymedB482
Cucsa.288650Silver-seed gourdcarcgyB0043
Cucsa.288650Silver-seed gourdcarcgyB0646
Cucsa.288650Silver-seed gourdcarcgyB1017
Cucsa.288650Cucumber (Chinese Long) v3cgycucB447
Cucsa.288650Cucumber (Chinese Long) v3cgycucB448