Carg13028-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13028-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	AP complex subunit sigma
Location	Cucurbita_argyrosperma_scaffold_052 : 722806 .. 723754 (-)
Sequence length	745

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGGTAAGCCCTCGTGTTCGATCTGAGATTATGTCTTCCGAACTTCGTTTGCCTTATCGTTTCTTTTGGGAGTTTATATTCTCGACGAGTTTCCTTTTCATCTATCAACGGATAAAAACTGTTTCTTGTTCAAAAGAAATGTGAGATTATGGGTTCTGAATGATGTTTCCTTCATGGATTTTACTGAATTGTCCGATTGACTTGCAGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTATAATGTTTGGTGCAAAATCTTGGCTGTCCTTATACTGTACGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACCTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTCGTGATTTGATAATACAATTTTTAATACCAGGGTTTCAATCTTTGATAATATATTTATGAAATATCAGATTCGATTCTTCTTAAGTCGATGAGAATAGGTTTAGGCTCGACTAGATTTAGAAATTCGTTAGGACGTTTACGAGGCTATTCTTCACGATGGGAATGAATTTTTGTTCATTTTCTCAGTAAATAACTTATCTTTGTTCATTTTTTTCGTTACGACTAAAAATTTAGATATTCATTAAGACCTTTAGGAGGCTGTTCTTCACTTTACAAATTTATTTTTGTTTTTTGT

mRNA sequence

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTATAATGTTTGGTGCAAAATCTTGGCTGTCCTTATACTGTACGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACCTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTCGTGATTTGATAATACAATTTTTAATACCAGGGTTTCAATCTTTGATAATATATTTATGAAATATCAGATTCGATTCTTCTTAAGTCGATGAGAATAGGTTTAGGCTCGACTAGATTTAGAAATTCGTTAGGACGTTTACGAGGCTATTCTTCACGATGGGAATGAATTTTTGTTCATTTTCTCAGTAAATAACTTATCTTTGTTCATTTTTTTCGTTACGACTAAAAATTTAGATATTCATTAAGACCTTTAGGAGGCTGTTCTTCACTTTACAAATTTATTTTTGTTTTTTGT

Coding sequence (CDS)

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGA

Protein sequence

MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Homology

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: XP_004135683.1 (PREDICTED: AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 complex subunit sigma [Cucumis melo] >XP_022960614.1 AP-4 complex subunit sigma [Cucurbita moschata] >XP_022987894.1 AP-4 complex subunit sigma [Cucurbita maxima] >XP_023515579.1 AP-4 complex subunit sigma [Cucurbita pepo subsp. pepo] >KGN66196.1 hypothetical protein Csa_1G575120 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: XP_022144808.1 (AP-4 complex subunit sigma [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: XP_006451356.1 (AP-4 complex subunit sigma [Citrus clementina] >XP_006475361.1 AP-4 complex subunit sigma [Citrus sinensis] >XP_024033931.1 AP-4 complex subunit sigma [Citrus clementina] >ESR64596.1 hypothetical protein CICLE_v10009831mg [Citrus clementina] >KDO55890.1 hypothetical protein CISIN_1g032296mg [Citrus sinensis] >GAY51238.1 hypothetical protein CUMW_132700 [Citrus unshiu])

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: XP_010047647.1 (PREDICTED: AP-4 complex subunit sigma [Eucalyptus grandis] >KCW79591.1 hypothetical protein EUGRSUZ_C00951 [Eucalyptus grandis])

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-28
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NIL+P
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILTP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: XP_012076827.1 (AP-4 complex subunit sigma isoform X2 [Jatropha curcas] >XP_020536629.1 AP-4 complex subunit sigma isoform X1 [Jatropha curcas] >KDP33768.1 hypothetical protein JCGZ_07339 [Jatropha curcas])

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-28
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNIL+P
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILAP 135

Query: 63  IQLMEKSS 71
           IQLM+KSS
Sbjct: 136 IQLMDKSS 143

[Close]

BLAST of Carg13028-RA vs. TAIR10
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 8.6e-31
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSP
Sbjct: 76  ENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135

Query: 63  IQLMEKS 70
           IQLM+K+
Sbjct: 136 IQLMDKA 142

[Close]

BLAST of Carg13028-RA vs. TAIR10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-12
Identity = 30/66 (45.45%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E+V  G ++ETS + ++  
Sbjct: 80  ENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKA 139

Query: 63  IQLMEK 69
           ++ + K
Sbjct: 140 VEEISK 145

[Close]

BLAST of Carg13028-RA vs. TAIR10
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-11
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G + ETSK  I+  +
Sbjct: 76  NELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERM 135

Query: 64  QLMEK 69
             +EK
Sbjct: 136 SELEK 140

[Close]

BLAST of Carg13028-RA vs. TAIR10
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 63.2 bits (152), Expect = 7.6e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I
Sbjct: 76  NELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

Query: 64  QLMEK 69
              ++
Sbjct: 136 SAQDQ 140

[Close]

BLAST of Carg13028-RA vs. TAIR10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 63.2 bits (152), Expect = 7.6e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I
Sbjct: 76  NELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

Query: 64  QLMEK 69
              ++
Sbjct: 136 SAQDQ 140

[Close]

BLAST of Carg13028-RA vs. Swiss-Prot
Match: sp|O82201|AP4S_ARATH (AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-29
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSP
Sbjct: 76  ENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135

Query: 63  IQLMEKS 70
           IQLM+K+
Sbjct: 136 IQLMDKA 142

[Close]

BLAST of Carg13028-RA vs. Swiss-Prot
Match: sp|Q9Y587|AP4S1_HUMAN (AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKMS 142

[Close]

BLAST of Carg13028-RA vs. Swiss-Prot
Match: sp|Q3ZBB6|AP4S1_BOVIN (AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKMS 142

[Close]

BLAST of Carg13028-RA vs. Swiss-Prot
Match: sp|Q9WVL1|AP4S1_MOUSE (AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.7e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKLS 142

[Close]

BLAST of Carg13028-RA vs. Swiss-Prot
Match: sp|Q9P7N2|AP1S1_SCHPO (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vas2 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 32/60 (53.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL ILE IH  VE +D++FGNVCELD++F+ EKA++++EE+++ G + E+SK+N+LS +
Sbjct: 77  NELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAV 136

[Close]

BLAST of Carg13028-RA vs. TrEMBL
Match: tr|A0A1S3BQ09|A0A1S3BQ09_CUCME (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. TrEMBL
Match: tr|A0A0A0M1T6|A0A0A0M1T6_CUCSA (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. TrEMBL
Match: tr|V4UQ46|V4UQ46_9ROSI (AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10009831mg PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

[Close]

BLAST of Carg13028-RA vs. TrEMBL
Match: tr|A0A2H5PFW1|A0A2H5PFW1_CITUN (AP complex subunit sigma OS=Citrus unshiu OX=55188 GN=CUMW_132700 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

[Close]

BLAST of Carg13028-RA vs. TrEMBL
Match: tr|A0A067EPS3|A0A067EPS3_CITSI (AP complex subunit sigma OS=Citrus sinensis OX=2711 GN=CISIN_1g032296mg PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEK S
Sbjct: 136 IQLMEKMS 143

The following BLAST results are available for this feature:

BLAST of Carg13028-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135683.1	8.6e-29	98.53	PREDICTED: AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTE...	[more]
XP_022144808.1	8.6e-29	98.53	AP-4 complex subunit sigma [Momordica charantia]	[more]
XP_006451356.1	3.3e-28	97.06	AP-4 complex subunit sigma [Citrus clementina] >XP_006475361.1 AP-4 complex subu...	[more]
XP_010047647.1	4.3e-28	95.59	PREDICTED: AP-4 complex subunit sigma [Eucalyptus grandis] >KCW79591.1 hypotheti...	[more]
XP_012076827.1	4.3e-28	95.59	AP-4 complex subunit sigma isoform X2 [Jatropha curcas] >XP_020536629.1 AP-4 com...	[more]

BLAST of Carg13028-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19790.1	8.6e-31	92.54	SNARE-like superfamily protein	[more]
AT3G50860.1	2.3e-12	45.45	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	3.4e-11	47.69	SNARE-like superfamily protein	[more]
AT2G17380.1	7.6e-11	43.08	associated protein 19	[more]
AT4G35410.2	7.6e-11	43.08	Clathrin adaptor complex small chain family protein	[more]

BLAST of Carg13028-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82201\|AP4S_ARATH	1.5e-29	92.54	AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=...	[more]
sp\|Q9Y587\|AP4S1_HUMAN	2.6e-16	55.88	AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1	[more]
sp\|Q3ZBB6\|AP4S1_BOVIN	4.4e-16	55.88	AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1	[more]
sp\|Q9WVL1\|AP4S1_MOUSE	5.7e-16	55.88	AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1	[more]
sp\|Q9P7N2\|AP1S1_SCHPO	1.0e-12	53.33	AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Carg13028-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQ09\|A0A1S3BQ09_CUCME	5.7e-29	98.53	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1	[more]
tr\|A0A0A0M1T6\|A0A0A0M1T6_CUCSA	5.7e-29	98.53	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1	[more]
tr\|V4UQ46\|V4UQ46_9ROSI	2.2e-28	97.06	AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10009831mg PE=3...	[more]
tr\|A0A2H5PFW1\|A0A2H5PFW1_CITUN	2.2e-28	97.06	AP complex subunit sigma OS=Citrus unshiu OX=55188 GN=CUMW_132700 PE=3 SV=1	[more]
tr\|A0A067EPS3\|A0A067EPS3_CITSI	2.2e-28	97.06	AP complex subunit sigma OS=Citrus sinensis OX=2711 GN=CISIN_1g032296mg PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011012	Longin-like_dom_sf
IPR016635	AP_complex_ssu
IPR022775	AP_mu_sigma_su

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13028	Carg13028	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA.three_prime_UTR.1	Carg13028-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA.CDS.2	Carg13028-RA.CDS.2	CDS
Carg13028-RA.CDS.1	Carg13028-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA.exon.2	Carg13028-RA.exon.2	exon
Carg13028-RA.exon.1	Carg13028-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA	Carg13028-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 3..68 e-value: 9.0E-21 score: 74.2
None	No IPR available	GENE3D	G3DSA:3.30.450.60		coord: 2..70 e-value: 2.3E-27 score: 97.5
None	No IPR available	PANTHER	PTHR11753:SF4	AP-4 COMPLEX SUBUNIT SIGMA-1	coord: 3..69
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	CLATHRIN COAT ASSEMBLY PROTEIN	coord: 3..69
IPR011012	Longin-like domain superfamily	SUPERFAMILY	SSF64356	SNARE-like	coord: 4..66