Carg12889 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12889
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase ATL6
Location	Cucurbita_argyrosperma_scaffold_043 : 1003922 .. 1005055 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTTCACCGCCGTCCACGCCGCCCTCTTCTTCCTCCTCTCCGTCTCCGTCTCCGCCCAGTCCCAATTCTCCCCCGACCCCAGATCCGACCCCTACCAGTATCGCCTCAGCGGTTCCATGGCTGTCATCATCGTAATCCTCATCGCCGCTCTCTTCTTCGTCGCTTTCTTCTCCGTTTACTTACGTCACTGCAACGATTCCCAATCCAACTCCGTCCGCCCTGTCACCGCCGCTGCTCGGTCCCGTCGCGCCGCTCGTGGTCTCGATCCGGCCGTGATTGAAACATTCCCGACGCTGATTTACTCCGATGTGAAACAGCATAAAATCGGTAAGAGTACCCTAGAATGCGCCGTTTGCTTGAATGAATTCGAAGATGATGAAACGCTGCGTTTAATCCCTAAATGTGACCATGTGTTTCATCCTGAGTGTATTGATGCTTGGTTGGCTTCTCATACTACTTGCCCTGTTTGTCGCGCTAATTTATCGCCTCAACTCACTGAGTCCGTCCACCGAGTTGAAGATTCCGCCGCCGTAGTCGACTCGGATGAGAACAGAGGAGATATTGAAGCGCAGAACAACGACGTCGTTTCTGAGACTAATCCAACTGCGGCTCCACCGCCGATTCAGATACCAGTTGAATCGGAGTTGAATACGACGACGGCGGCTAACAAGTCGTTGAATCGTAACCGTACACGTGGATCCCGCTCCAATAGATTGCGGTGGTTATTCCCCCGGTCTCACTCAACTGGCCACTCCTTGGTTCAGCCCGGGGAGGACACCGAGCGGTTTACTCTCCGGTTGCCACTTGAAATAAGGAAGCAAGTAGTGAACCGGAAACTGAACCGGGCGACGAGTATGGTAATTCTGGCAAGGCAGAGCAGCTTGATGAGAGGATACCGGTTCGGTTCAGGCGAAGGGAGTAGTCGAGGGAAGTATTACCGAAGACTTGAACGGTTGGACCGGACATCAAAGTCAGACCGGTGGGTGTTGTCAATTACACCGCCGTTTTTTACTCGCATGTCATCGATGAAGACTCCCCGGGGAGGGAGTATCCATGGTGAACCGGGTTTGGGTCGAGAACTTGGACAAGGAAGTTCCACGGCCGAGTCGAGTAGGCTTCCGGTCTGA

mRNA sequence

ATGGCCTCTTTCACCGCCGTCCACGCCGCCCTCTTCTTCCTCCTCTCCGTCTCCGTCTCCGCCCAGTCCCAATTCTCCCCCGACCCCAGATCCGACCCCTACCAGTATCGCCTCAGCGGTTCCATGGCTGTCATCATCGTAATCCTCATCGCCGCTCTCTTCTTCGTCGCTTTCTTCTCCGTTTACTTACGTCACTGCAACGATTCCCAATCCAACTCCGTCCGCCCTGTCACCGCCGCTGCTCGGTCCCGTCGCGCCGCTCGTGGTCTCGATCCGGCCGTGATTGAAACATTCCCGACGCTGATTTACTCCGATGTGAAACAGCATAAAATCGGTAAGAGTACCCTAGAATGCGCCGTTTGCTTGAATGAATTCGAAGATGATGAAACGCTGCGTTTAATCCCTAAATGTGACCATGTGTTTCATCCTGAGTGTATTGATGCTTGGTTGGCTTCTCATACTACTTGCCCTGTTTGTCGCGCTAATTTATCGCCTCAACTCACTGAGTCCGTCCACCGAGTTGAAGATTCCGCCGCCGTAGTCGACTCGGATGAGAACAGAGGAGATATTGAAGCGCAGAACAACGACGTCGTTTCTGAGACTAATCCAACTGCGGCTCCACCGCCGATTCAGATACCAGTTGAATCGGAGTTGAATACGACGACGGCGGCTAACAAGTCGTTGAATCGTAACCGTACACGTGGATCCCGCTCCAATAGATTGCGGTGGTTATTCCCCCGGTCTCACTCAACTGGCCACTCCTTGGTTCAGCCCGGGGAGGACACCGAGCGGTTTACTCTCCGGTTGCCACTTGAAATAAGGAAGCAAGTAGTGAACCGGAAACTGAACCGGGCGACGAGTATGGTAATTCTGGCAAGGCAGAGCAGCTTGATGAGAGGATACCGGTTCGGTTCAGGCGAAGGGAGTAGTCGAGGGAAGTATTACCGAAGACTTGAACGGTTGGACCGGACATCAAAGTCAGACCGGTGGGTGTTGTCAATTACACCGCCGTTTTTTACTCGCATGTCATCGATGAAGACTCCCCGGGGAGGGAGTATCCATGGTGAACCGGGTTTGGGTCGAGAACTTGGACAAGGAAGTTCCACGGCCGAGTCGAGTAGGCTTCCGGTCTGA

Coding sequence (CDS)

ATGGCCTCTTTCACCGCCGTCCACGCCGCCCTCTTCTTCCTCCTCTCCGTCTCCGTCTCCGCCCAGTCCCAATTCTCCCCCGACCCCAGATCCGACCCCTACCAGTATCGCCTCAGCGGTTCCATGGCTGTCATCATCGTAATCCTCATCGCCGCTCTCTTCTTCGTCGCTTTCTTCTCCGTTTACTTACGTCACTGCAACGATTCCCAATCCAACTCCGTCCGCCCTGTCACCGCCGCTGCTCGGTCCCGTCGCGCCGCTCGTGGTCTCGATCCGGCCGTGATTGAAACATTCCCGACGCTGATTTACTCCGATGTGAAACAGCATAAAATCGGTAAGAGTACCCTAGAATGCGCCGTTTGCTTGAATGAATTCGAAGATGATGAAACGCTGCGTTTAATCCCTAAATGTGACCATGTGTTTCATCCTGAGTGTATTGATGCTTGGTTGGCTTCTCATACTACTTGCCCTGTTTGTCGCGCTAATTTATCGCCTCAACTCACTGAGTCCGTCCACCGAGTTGAAGATTCCGCCGCCGTAGTCGACTCGGATGAGAACAGAGGAGATATTGAAGCGCAGAACAACGACGTCGTTTCTGAGACTAATCCAACTGCGGCTCCACCGCCGATTCAGATACCAGTTGAATCGGAGTTGAATACGACGACGGCGGCTAACAAGTCGTTGAATCGTAACCGTACACGTGGATCCCGCTCCAATAGATTGCGGTGGTTATTCCCCCGGTCTCACTCAACTGGCCACTCCTTGGTTCAGCCCGGGGAGGACACCGAGCGGTTTACTCTCCGGTTGCCACTTGAAATAAGGAAGCAAGTAGTGAACCGGAAACTGAACCGGGCGACGAGTATGGTAATTCTGGCAAGGCAGAGCAGCTTGATGAGAGGATACCGGTTCGGTTCAGGCGAAGGGAGTAGTCGAGGGAAGTATTACCGAAGACTTGAACGGTTGGACCGGACATCAAAGTCAGACCGGTGGGTGTTGTCAATTACACCGCCGTTTTTTACTCGCATGTCATCGATGAAGACTCCCCGGGGAGGGAGTATCCATGGTGAACCGGGTTTGGGTCGAGAACTTGGACAAGGAAGTTCCACGGCCGAGTCGAGTAGGCTTCCGGTCTGA

Protein sequence

MASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQYRLSGSMAVIIVILIAALFFVAFFSVYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPGLGRELGQGSSTAESSRLPV

Homology

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BLAST of Carg12889 vs. NCBI nr
Match: XP_023545580.1 (E3 ubiquitin-protein ligase ATL6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 728.4 bits (1879), Expect = 1.2e-206
Identity = 376/377 (99.73%), Postives = 376/377 (99.73%), Query Frame = 0


Query: 1   MASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQYRLSGSMAVIIVXXXAALFFVAFFS 60
           MASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQYRLSGSMAVIIVXXXAALFFVAFFS
Sbjct: 1   MASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQYRLSGSMAVIIVXXXAALFFVAFFS 60

Query: 61  VYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLECAV 120
           VYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLECAV
Sbjct: 61  VYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLECAV 120

Query: 121 CLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAV 180
           CLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAV
Sbjct: 121 CLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAV 180

Query: 181 VDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRSNR 240
           VDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRSNR
Sbjct: 181 VDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRSNR 240

Query: 241 LRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSLMRG 300
           LRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSS MRG
Sbjct: 241 LRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSSMRG 300

Query: 301 YRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPGLG 360
           YRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPGLG
Sbjct: 301 YRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPGLG 360

Query: 361 RELGQGSSTAESSRLPV 378
           RELGQGSSTAESSRLPV
Sbjct: 361 RELGQGSSTAESSRLPV 377

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BLAST of Carg12889 vs. NCBI nr
Match: XP_022999119.1 (E3 ubiquitin-protein ligase ATL6-like [Cucurbita maxima])

HSP 1 Score: 719.9 bits (1857), Expect = 4.4e-204
Identity = 370/377 (98.14%), Postives = 375/377 (99.47%), Query Frame = 0


Query: 1   MASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQYRLSGSMAVIIVXXXAALFFVAFFS 60
           MASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQYRLSGSMAVIIVXXXAALFFVAFFS
Sbjct: 1   MASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQYRLSGSMAVIIVXXXAALFFVAFFS 60

Query: 61  VYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLECAV 120
           VYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVK+HKIGKSTLECAV
Sbjct: 61  VYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKEHKIGKSTLECAV 120

Query: 121 CLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAV 180
           CLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAV
Sbjct: 121 CLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAV 180

Query: 181 VDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRSNR 240
           VDSDENRGDIEAQNNDVVSETNPTAAPPPI IPVESELNTTTAANK+LNRNRTRGSRSNR
Sbjct: 181 VDSDENRGDIEAQNNDVVSETNPTAAPPPIHIPVESELNTTTAANKALNRNRTRGSRSNR 240

Query: 241 LRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSLMRG 300
           LRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSS +RG
Sbjct: 241 LRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSSIRG 300

Query: 301 YRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPGLG 360
           Y+FGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPGLG
Sbjct: 301 YQFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPGLG 360

Query: 361 RELGQGSSTAESSRLPV 378
           RELGQG+STAESSRLPV
Sbjct: 361 RELGQGNSTAESSRLPV 377

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BLAST of Carg12889 vs. NCBI nr
Match: XP_022946284.1 (E3 ubiquitin-protein ligase ATL6-like [Cucurbita moschata])

HSP 1 Score: 682.9 bits (1761), Expect = 6.0e-193
Identity = 357/379 (94.20%), Postives = 357/379 (94.20%), Query Frame = 0


Query: 1   MASFTAVHAALFFLLSV--SVSAQSQFSPDPRSDPYQYRLSGSMAVIIVXXXAALFFVAF 60
           M SFTAVHAALFFLLSV              RSDPYQYRLSGSM     XXXAALFFVAF
Sbjct: 1   MVSFTAVHAALFFLLSVXXXXXXXXXXXXXXRSDPYQYRLSGSMXXXXXXXXAALFFVAF 60

Query: 61  FSVYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLEC 120
           FSVYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLEC
Sbjct: 61  FSVYLRHCNDSQSNSVRPVTAAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLEC 120

Query: 121 AVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSA 180
           AVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSA
Sbjct: 121 AVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSA 180

Query: 181 AVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRS 240
           AVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIP ESELNTTTAANKSLNRNRTRGSRS
Sbjct: 181 AVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPAESELNTTTAANKSLNRNRTRGSRS 240

Query: 241 NRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSLM 300
           NRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSS M
Sbjct: 241 NRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSSM 300

Query: 301 RGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPG 360
           RGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPG
Sbjct: 301 RGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPG 360

Query: 361 LGRELGQGSSTAESSRLPV 378
           LGRELGQGSSTAESSRLPV
Sbjct: 361 LGRELGQGSSTAESSRLPV 379

[Close]

BLAST of Carg12889 vs. NCBI nr
Match: XP_004139190.1 (PREDICTED: E3 ubiquitin-protein ligase ATL6 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 2.1e-153
Identity = 281/327 (85.93%), Postives = 299/327 (91.44%), Query Frame = 0


Query: 52  ALFFVAFFSVYLRHCNDSQSNSVRPVT-AAARSRRAARGLDPAVIETFPTLIYSDVKQHK 111
           ALFF+AFFSVY+RHCNDSQSN++RP+T AA RSRRA RGLDPAVIETFPTLIYSDVK+HK
Sbjct: 57  ALFFMAFFSVYIRHCNDSQSNTIRPITVAAGRSRRATRGLDPAVIETFPTLIYSDVKEHK 116

Query: 112 IGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTES 171
           IGKS LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASH+TCPVCRANLSPQLTES
Sbjct: 117 IGKSALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHSTCPVCRANLSPQLTES 176

Query: 172 VHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNR 231
           VHRV+DS AVV+SD + GDIEAQ+ DVV E   T APP +QI  ESEL TTT  NK+LNR
Sbjct: 177 VHRVDDSNAVVNSDTDGGDIEAQSTDVVLE---TTAPPTVQIQTESEL-TTTTGNKALNR 236

Query: 232 NRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVI 291
            RTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLP+EIRKQVVNRKLNRA SMV+
Sbjct: 237 TRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLNRAMSMVV 296

Query: 292 LARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRG 351
           LARQSS MRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLS+TPPFFTRMSSMKTPRG
Sbjct: 297 LARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTPRG 356

Query: 352 GSIHGEPGLGRELGQGSSTAESSRLPV 378
           GS  GEPG GRELGQG++  ESS LPV
Sbjct: 357 GSNRGEPGSGRELGQGNTAVESSMLPV 379

[Close]

BLAST of Carg12889 vs. NCBI nr
Match: KGN60885.1 (hypothetical protein Csa_2G021560 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 2.1e-153
Identity = 281/327 (85.93%), Postives = 299/327 (91.44%), Query Frame = 0


Query: 52  ALFFVAFFSVYLRHCNDSQSNSVRPVT-AAARSRRAARGLDPAVIETFPTLIYSDVKQHK 111
           ALFF+AFFSVY+RHCNDSQSN++RP+T AA RSRRA RGLDPAVIETFPTLIYSDVK+HK
Sbjct: 153 ALFFMAFFSVYIRHCNDSQSNTIRPITVAAGRSRRATRGLDPAVIETFPTLIYSDVKEHK 212

Query: 112 IGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTES 171
           IGKS LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASH+TCPVCRANLSPQLTES
Sbjct: 213 IGKSALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHSTCPVCRANLSPQLTES 272

Query: 172 VHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNR 231
           VHRV+DS AVV+SD + GDIEAQ+ DVV E   T APP +QI  ESEL TTT  NK+LNR
Sbjct: 273 VHRVDDSNAVVNSDTDGGDIEAQSTDVVLE---TTAPPTVQIQTESEL-TTTTGNKALNR 332

Query: 232 NRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVI 291
            RTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLP+EIRKQVVNRKLNRA SMV+
Sbjct: 333 TRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLNRAMSMVV 392

Query: 292 LARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRG 351
           LARQSS MRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLS+TPPFFTRMSSMKTPRG
Sbjct: 393 LARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTPRG 452

Query: 352 GSIHGEPGLGRELGQGSSTAESSRLPV 378
           GS  GEPG GRELGQG++  ESS LPV
Sbjct: 453 GSNRGEPGSGRELGQGNTAVESSMLPV 475

[Close]

BLAST of Carg12889 vs. TAIR10
Match: AT3G05200.1 (RING/U-box superfamily protein)

HSP 1 Score: 258.8 bits (660), Expect = 5.1e-69
Identity = 165/347 (47.55%), Postives = 207/347 (59.65%), Query Frame = 0


Query: 3   SFTAVHAALFFL-LSVSVSAQSQFSPDPRSDPYQY-RLSGSMAVIIVXXXAALFFVAFFS 62
           +F  V   +F L LS +  A SQ  P P + PY Y RLS +MAVI+V   AALFF+ FFS
Sbjct: 8   AFAGVLPIVFLLILSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFS 67

Query: 63  VYLRHCNDSQSNSVRPVTAAARSR----RAARGLDPAVIETFPTLIYSDVKQHKIGKSTL 122
           +Y RHC+      V P    ARSR     AARGLD +V+ETFPT +YSDVK  K+GK  L
Sbjct: 68  IYFRHCSGVPDAGVSP-AGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGEL 127

Query: 123 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVED 182
           ECA+CLNEFEDDETLRL+PKCDHVFHP CIDAWL +H TCPVCRANL+ Q+ E       
Sbjct: 128 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAE------- 187

Query: 183 SAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGS 242
               V+      D+E Q   V    NP    P +  PV  +L T+      ++  R  G 
Sbjct: 188 -GESVEPGGTEPDLELQQVVV----NP---EPVVTAPVPEQLVTS-----EVDSRRLPGV 247

Query: 243 RSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVV-NRKLNRATSMVILARQS 302
             +  R  F RSH+TGHS+VQPGE TERFTLRLP ++RK+++ + KLNR  S+++L R  
Sbjct: 248 PVDLKRVKFSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPR-- 307

Query: 303 SLMRGYRFGSGEGSSRGKYYRRLERLDRT-SKSDRWVLSITPPFFTR 342
                     G  S RGK       +DR+ ++SDRW+   TP F  R
Sbjct: 308 ----------GGSSRRGK------PIDRSRARSDRWLFRKTPSFLWR 315

[Close]

BLAST of Carg12889 vs. TAIR10
Match: AT5G27420.1 (carbon/nitrogen insensitive 1)

HSP 1 Score: 235.7 bits (600), Expect = 4.6e-62
Identity = 154/355 (43.38%), Postives = 190/355 (53.52%), Query Frame = 0


Query: 11  LFFLLSVSVSAQSQFSPDPRSDPYQY--RLSGSMAVIIVXXXAALFFVAFFSVYLRHCND 70
           L   L +SVSA    +PD R DPY Y   LS +MA    XXX    F+ FF+VY+RHC  
Sbjct: 12  LVLFLLLSVSAGQPGTPDQRHDPYAYSGSLSPAMAXXXXXXXXXXXFMGFFTVYIRHCTG 71

Query: 71  SQSNSVRPVTAAAR---SRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLECAVCLNEF 130
           +   SV P   A R   +   ARGLD   IETFPT +YS+VK  KIGK  LECA+CLNEF
Sbjct: 72  AVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEF 131

Query: 131 EDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAVVDSDE 190
           EDDETLRL+PKCDHVFHP CI AWL  H TCPVCR NL+ Q  E    VE          
Sbjct: 132 EDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPEPEVVVET--------- 191

Query: 191 NRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRSNRLRWLF 250
              D+EAQ    V         P +++P                            R  F
Sbjct: 192 ---DLEAQQQSAV-------PVPVVELP----------------------------RVKF 251

Query: 251 PRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVV-NRKLNRATSMVILARQSSLMRGYRFG 310
           PRSH+TGHS+V PGE T+RFTLR+P E+RK+++ N KLNR+ S+ +L R           
Sbjct: 252 PRSHTTGHSVVLPGESTDRFTLRVPEELRKKIMANWKLNRSNSVFVLPR----------- 301

Query: 311 SGEGSSRGKYYRRLERLDRT-SKSDRWVLSITPPFFTRM---SSMKTPRGGSIHG 356
            G  S  GK      ++DR+ +KSDRW+   TP F  R     S++    GS+ G
Sbjct: 312 -GGSSRSGK------QVDRSRAKSDRWLFRKTPSFLWRNRDDGSIRLGGTGSVRG 301

[Close]

BLAST of Carg12889 vs. TAIR10
Match: AT1G72200.1 (RING/U-box superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-50
Identity = 132/322 (40.99%), Postives = 174/322 (54.04%), Query Frame = 0


Query: 37  RLSGSMAVIIVXXXAALFFVAFFSVYLRHCND-----SQSNSVRPVTAAARSRRAARGLD 96
           R   +MA++++   +  FF+ FFSVY+R C +        N        A +R+ ARGLD
Sbjct: 58  RFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLD 117

Query: 97  PAVIETFPTLIYSDVKQHKIGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLA 156
            ++IETFPT  YS VK  +IGK  LEC+VCLNEFEDDETLRLIPKC HVFHP CIDAWL 
Sbjct: 118 ASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLR 177

Query: 157 SHTTCPVCRANLSPQLTESVHRVEDSAAVVD---SDENRGDIEAQNNDVVSETNPTAAPP 216
           SHTTCP+CRA+L P   ES+  ++    V D   SD N   I +  +             
Sbjct: 178 SHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGSDPNGDRIRSLGSP------------ 237

Query: 217 PIQIPVESELNTTTAANKSLNRNRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLR 276
                 ++ L  + A   + +  R   S    L  +F  S  TG    Q  E+ +RFTLR
Sbjct: 238 ------DARLIESVALTCNQSMPRRSMSTGWNLAGMFTNSDRTG----QHSENLDRFTLR 297

Query: 277 LPLEIRKQVVNRKLNRATSMVILARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSD 336
           LP +I  ++VN  L++    V L +  S  RGYR GS  GS R  +Y   ER D+  + D
Sbjct: 298 LPQDIHNKLVNPNLSKV--HVALPQVMSSTRGYRTGS-LGSERNYFY--YERFDQDGRLD 352

Query: 337 RWVLSITPPFFTRMSSMKTPRG 351
           R   SITPP+ T   +  +P G
Sbjct: 358 RRPFSITPPYRTSSINHMSPGG 352

[Close]

BLAST of Carg12889 vs. TAIR10
Match: AT1G22500.1 (RING/U-box superfamily protein)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-44
Identity = 125/321 (38.94%), Postives = 168/321 (52.34%), Query Frame = 0


Query: 39  SGSMAVIIVXXXAALFFVAFFSVYLRHCND---SQSNSVRPVTAAARSRRAARGLDPAVI 98
           S + A+I++   +  F +   SVY+R C        +   P       +    GLD +VI
Sbjct: 36  SPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVI 95

Query: 99  ETFPTLIYSDVKQHKIGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTT 158
           ETFPT  YS VK  +IGK  LEC VCLNEFEDDETLRLIP+C HVFHP CIDAWL S TT
Sbjct: 96  ETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTT 155

Query: 159 CPVCRANLSPQLTESVHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVE 218
           CP+CRANL P   ESV           S E  G        +  ET   +   PI    +
Sbjct: 156 CPLCRANLVPVPGESV-----------SSEIPG--------LARETGQNSLRTPID---D 215

Query: 219 SELNTTTAANKSL------NRNRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRL 278
           +     T+ ++ L        N++   +S    W     +S   S  QP E+ +R+TLRL
Sbjct: 216 NRKRVLTSPDERLIDSVAWTGNQSMPRKSMSTGWKLAELYSPASSPGQPEENLDRYTLRL 275

Query: 279 PLEIRKQVVNRKLNRATS--MVILARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKS 338
           P EI  Q+VN  L +  S   + L ++ S +RG+R GS  G+ +  +Y   ER D+  + 
Sbjct: 276 PQEIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTGS-LGTEKNYFY--FERFDQDGRL 329

Query: 339 DRWVLSITPPFFTRMSSMKTP 349
           DR   SITPP+ TR  S+++P
Sbjct: 336 DRRPFSITPPYHTR--SIQSP 329

[Close]

BLAST of Carg12889 vs. TAIR10
Match: AT2G35000.1 (RING/U-box superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 9.0e-42
Identity = 122/316 (38.61%), Postives = 170/316 (53.80%), Query Frame = 0


Query: 58  FFSVYLRHCND--SQSNSVRPVTAAARS------RRAARGLDPAVIETFPTLIYSDVKQH 117
           F S++ R  N   S+S+  R   A A S      R  ARGLD   IETFPT +YS+VK  
Sbjct: 67  FGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAV 126

Query: 118 KIGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANL------ 177
           +IGK  +ECAVCL EFEDDETLRL+P C HVFH +C+D WL+ H+TCP+CRA+L      
Sbjct: 127 RIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQG 186

Query: 178 -SPQLTESVHRVEDSAAVVDSDENRGDI----EAQNNDVVSETNPTAAPPPIQIPVESEL 237
                TES    +       +D  RG +    +A   D V+ +N    P           
Sbjct: 187 DDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDAVTWSNSNITP----------- 246

Query: 238 NTTTAANKSLNRNRTRGSRSNRLRW-LFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQV 297
                      R+++ G  S ++   LFPRSHSTGHSL+QP  + +RFTLRLP ++R+Q+
Sbjct: 247 -----------RSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQL 306

Query: 298 VNRKLNRATSMVILARQSSLMR-GYRFGSGEGSSRGKY-YRRLERLDRTSKSDRWVLSIT 352
           +  K +R    V L  Q+   R GYR GS  GS R  + Y R     +++ ++R + S++
Sbjct: 307 M--KTSRTMGHVALLPQARSSRSGYRSGS-VGSERSAFPYGR-----KSNNNNRRLHSLS 352

[Close]

BLAST of Carg12889 vs. Swiss-Prot
Match: sp|Q8RXX9|ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 9.1e-68
Identity = 165/347 (47.55%), Postives = 207/347 (59.65%), Query Frame = 0


Query: 3   SFTAVHAALFFL-LSVSVSAQSQFSPDPRSDPYQY-RLSGSMAVIIVXXXAALFFVAFFS 62
           +F  V   +F L LS +  A SQ  P P + PY Y RLS +MAVI+V   AALFF+ FFS
Sbjct: 8   AFAGVLPIVFLLILSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFS 67

Query: 63  VYLRHCNDSQSNSVRPVTAAARSR----RAARGLDPAVIETFPTLIYSDVKQHKIGKSTL 122
           +Y RHC+      V P    ARSR     AARGLD +V+ETFPT +YSDVK  K+GK  L
Sbjct: 68  IYFRHCSGVPDAGVSP-AGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGEL 127

Query: 123 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVED 182
           ECA+CLNEFEDDETLRL+PKCDHVFHP CIDAWL +H TCPVCRANL+ Q+ E       
Sbjct: 128 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAE------- 187

Query: 183 SAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGS 242
               V+      D+E Q   V    NP    P +  PV  +L T+      ++  R  G 
Sbjct: 188 -GESVEPGGTEPDLELQQVVV----NP---EPVVTAPVPEQLVTS-----EVDSRRLPGV 247

Query: 243 RSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVV-NRKLNRATSMVILARQS 302
             +  R  F RSH+TGHS+VQPGE TERFTLRLP ++RK+++ + KLNR  S+++L R  
Sbjct: 248 PVDLKRVKFSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPR-- 307

Query: 303 SLMRGYRFGSGEGSSRGKYYRRLERLDRT-SKSDRWVLSITPPFFTR 342
                     G  S RGK       +DR+ ++SDRW+   TP F  R
Sbjct: 308 ----------GGSSRRGK------PIDRSRARSDRWLFRKTPSFLWR 315

[Close]

BLAST of Carg12889 vs. Swiss-Prot
Match: sp|Q8LGA5|ATL31_ARATH (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 235.7 bits (600), Expect = 8.3e-61
Identity = 154/355 (43.38%), Postives = 190/355 (53.52%), Query Frame = 0


Query: 11  LFFLLSVSVSAQSQFSPDPRSDPYQY--RLSGSMAVIIVXXXAALFFVAFFSVYLRHCND 70
           L   L +SVSA    +PD R DPY Y   LS +MA    XXX    F+ FF+VY+RHC  
Sbjct: 12  LVLFLLLSVSAGQPGTPDQRHDPYAYSGSLSPAMAXXXXXXXXXXXFMGFFTVYIRHCTG 71

Query: 71  SQSNSVRPVTAAAR---SRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLECAVCLNEF 130
           +   SV P   A R   +   ARGLD   IETFPT +YS+VK  KIGK  LECA+CLNEF
Sbjct: 72  AVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEF 131

Query: 131 EDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSAAVVDSDE 190
           EDDETLRL+PKCDHVFHP CI AWL  H TCPVCR NL+ Q  E    VE          
Sbjct: 132 EDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPEPEVVVET--------- 191

Query: 191 NRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRSNRLRWLF 250
              D+EAQ    V         P +++P                            R  F
Sbjct: 192 ---DLEAQQQSAV-------PVPVVELP----------------------------RVKF 251

Query: 251 PRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVV-NRKLNRATSMVILARQSSLMRGYRFG 310
           PRSH+TGHS+V PGE T+RFTLR+P E+RK+++ N KLNR+ S+ +L R           
Sbjct: 252 PRSHTTGHSVVLPGESTDRFTLRVPEELRKKIMANWKLNRSNSVFVLPR----------- 301

Query: 311 SGEGSSRGKYYRRLERLDRT-SKSDRWVLSITPPFFTRM---SSMKTPRGGSIHG 356
            G  S  GK      ++DR+ +KSDRW+   TP F  R     S++    GS+ G
Sbjct: 312 -GGSSRSGK------QVDRSRAKSDRWLFRKTPSFLWRNRDDGSIRLGGTGSVRG 301

[Close]

BLAST of Carg12889 vs. Swiss-Prot
Match: sp|Q84W40|ATL11_ARATH (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-49
Identity = 132/322 (40.99%), Postives = 174/322 (54.04%), Query Frame = 0


Query: 37  RLSGSMAVIIVXXXAALFFVAFFSVYLRHCND-----SQSNSVRPVTAAARSRRAARGLD 96
           R   +MA++++   +  FF+ FFSVY+R C +        N        A +R+ ARGLD
Sbjct: 58  RFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLD 117

Query: 97  PAVIETFPTLIYSDVKQHKIGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLA 156
            ++IETFPT  YS VK  +IGK  LEC+VCLNEFEDDETLRLIPKC HVFHP CIDAWL 
Sbjct: 118 ASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLR 177

Query: 157 SHTTCPVCRANLSPQLTESVHRVEDSAAVVD---SDENRGDIEAQNNDVVSETNPTAAPP 216
           SHTTCP+CRA+L P   ES+  ++    V D   SD N   I +  +             
Sbjct: 178 SHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGSDPNGDRIRSLGSP------------ 237

Query: 217 PIQIPVESELNTTTAANKSLNRNRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLR 276
                 ++ L  + A   + +  R   S    L  +F  S  TG    Q  E+ +RFTLR
Sbjct: 238 ------DARLIESVALTCNQSMPRRSMSTGWNLAGMFTNSDRTG----QHSENLDRFTLR 297

Query: 277 LPLEIRKQVVNRKLNRATSMVILARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSD 336
           LP +I  ++VN  L++    V L +  S  RGYR GS  GS R  +Y   ER D+  + D
Sbjct: 298 LPQDIHNKLVNPNLSKV--HVALPQVMSSTRGYRTGS-LGSERNYFY--YERFDQDGRLD 352

Query: 337 RWVLSITPPFFTRMSSMKTPRG 351
           R   SITPP+ T   +  +P G
Sbjct: 358 RRPFSITPPYRTSSINHMSPGG 352

[Close]

BLAST of Carg12889 vs. Swiss-Prot
Match: sp|Q9SK92|ATL15_ARATH (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-43
Identity = 125/321 (38.94%), Postives = 168/321 (52.34%), Query Frame = 0


Query: 39  SGSMAVIIVXXXAALFFVAFFSVYLRHCND---SQSNSVRPVTAAARSRRAARGLDPAVI 98
           S + A+I++   +  F +   SVY+R C        +   P       +    GLD +VI
Sbjct: 36  SPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVI 95

Query: 99  ETFPTLIYSDVKQHKIGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTT 158
           ETFPT  YS VK  +IGK  LEC VCLNEFEDDETLRLIP+C HVFHP CIDAWL S TT
Sbjct: 96  ETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTT 155

Query: 159 CPVCRANLSPQLTESVHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVE 218
           CP+CRANL P   ESV           S E  G        +  ET   +   PI    +
Sbjct: 156 CPLCRANLVPVPGESV-----------SSEIPG--------LARETGQNSLRTPID---D 215

Query: 219 SELNTTTAANKSL------NRNRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRL 278
           +     T+ ++ L        N++   +S    W     +S   S  QP E+ +R+TLRL
Sbjct: 216 NRKRVLTSPDERLIDSVAWTGNQSMPRKSMSTGWKLAELYSPASSPGQPEENLDRYTLRL 275

Query: 279 PLEIRKQVVNRKLNRATS--MVILARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKS 338
           P EI  Q+VN  L +  S   + L ++ S +RG+R GS  G+ +  +Y   ER D+  + 
Sbjct: 276 PQEIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTGS-LGTEKNYFY--FERFDQDGRL 329

Query: 339 DRWVLSITPPFFTRMSSMKTP 349
           DR   SITPP+ TR  S+++P
Sbjct: 336 DRRPFSITPPYHTR--SIQSP 329

[Close]

BLAST of Carg12889 vs. Swiss-Prot
Match: sp|O64763|ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-40
Identity = 122/316 (38.61%), Postives = 170/316 (53.80%), Query Frame = 0


Query: 58  FFSVYLRHCND--SQSNSVRPVTAAARS------RRAARGLDPAVIETFPTLIYSDVKQH 117
           F S++ R  N   S+S+  R   A A S      R  ARGLD   IETFPT +YS+VK  
Sbjct: 67  FGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAV 126

Query: 118 KIGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANL------ 177
           +IGK  +ECAVCL EFEDDETLRL+P C HVFH +C+D WL+ H+TCP+CRA+L      
Sbjct: 127 RIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQG 186

Query: 178 -SPQLTESVHRVEDSAAVVDSDENRGDI----EAQNNDVVSETNPTAAPPPIQIPVESEL 237
                TES    +       +D  RG +    +A   D V+ +N    P           
Sbjct: 187 DDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDAVTWSNSNITP----------- 246

Query: 238 NTTTAANKSLNRNRTRGSRSNRLRW-LFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQV 297
                      R+++ G  S ++   LFPRSHSTGHSL+QP  + +RFTLRLP ++R+Q+
Sbjct: 247 -----------RSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQL 306

Query: 298 VNRKLNRATSMVILARQSSLMR-GYRFGSGEGSSRGKY-YRRLERLDRTSKSDRWVLSIT 352
           +  K +R    V L  Q+   R GYR GS  GS R  + Y R     +++ ++R + S++
Sbjct: 307 M--KTSRTMGHVALLPQARSSRSGYRSGS-VGSERSAFPYGR-----KSNNNNRRLHSLS 352

[Close]

BLAST of Carg12889 vs. TrEMBL
Match: tr|A0A0A0LFQ4|A0A0A0LFQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021560 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.4e-153
Identity = 281/327 (85.93%), Postives = 299/327 (91.44%), Query Frame = 0


Query: 52  ALFFVAFFSVYLRHCNDSQSNSVRPVT-AAARSRRAARGLDPAVIETFPTLIYSDVKQHK 111
           ALFF+AFFSVY+RHCNDSQSN++RP+T AA RSRRA RGLDPAVIETFPTLIYSDVK+HK
Sbjct: 153 ALFFMAFFSVYIRHCNDSQSNTIRPITVAAGRSRRATRGLDPAVIETFPTLIYSDVKEHK 212

Query: 112 IGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTES 171
           IGKS LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASH+TCPVCRANLSPQLTES
Sbjct: 213 IGKSALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHSTCPVCRANLSPQLTES 272

Query: 172 VHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNR 231
           VHRV+DS AVV+SD + GDIEAQ+ DVV E   T APP +QI  ESEL TTT  NK+LNR
Sbjct: 273 VHRVDDSNAVVNSDTDGGDIEAQSTDVVLE---TTAPPTVQIQTESEL-TTTTGNKALNR 332

Query: 232 NRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVI 291
            RTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLP+EIRKQVVNRKLNRA SMV+
Sbjct: 333 TRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLNRAMSMVV 392

Query: 292 LARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRG 351
           LARQSS MRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLS+TPPFFTRMSSMKTPRG
Sbjct: 393 LARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTPRG 452

Query: 352 GSIHGEPGLGRELGQGSSTAESSRLPV 378
           GS  GEPG GRELGQG++  ESS LPV
Sbjct: 453 GSNRGEPGSGRELGQGNTAVESSMLPV 475

[Close]

BLAST of Carg12889 vs. TrEMBL
Match: tr|A0A1S3C0V4|A0A1S3C0V4_CUCME (E3 ubiquitin-protein ligase ATL6 OS=Cucumis melo OX=3656 GN=LOC103495208 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 1.9e-147
Identity = 272/327 (83.18%), Postives = 293/327 (89.60%), Query Frame = 0


Query: 52  ALFFVAFFSVYLRHCNDSQSNSVRPVTAAA-RSRRAARGLDPAVIETFPTLIYSDVKQHK 111
           ALFF+AFFSVY+RHCNDS SN+VRP+TAAA RSRRA RGLDPAVIETFPTLIYSDVK+HK
Sbjct: 57  ALFFMAFFSVYIRHCNDSPSNTVRPITAAAGRSRRATRGLDPAVIETFPTLIYSDVKEHK 116

Query: 112 IGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTES 171
           IGKS LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASH+TCPVCRANLSPQ T+S
Sbjct: 117 IGKSALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHSTCPVCRANLSPQPTDS 176

Query: 172 VHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNR 231
           VHR +DS AVV+SD + GDIEAQ+NDVVSE   T APP +Q            +NK+LNR
Sbjct: 177 VHRADDSNAVVNSDTDGGDIEAQSNDVVSE---TTAPPTVQ-XXXXXXXXXXXSNKALNR 236

Query: 232 NRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVI 291
            RTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLP+EIRKQVVNRKL+RATSMV+
Sbjct: 237 TRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLHRATSMVV 296

Query: 292 LARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRG 351
           LARQSS MRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLS+TPPFFTRMSSMKTPRG
Sbjct: 297 LARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTPRG 356

Query: 352 GSIHGEPGLGRELGQGSSTAESSRLPV 378
           GS   EPG GRELGQG++  +SSRLPV
Sbjct: 357 GSNRAEPGSGRELGQGNTAVDSSRLPV 379

[Close]

BLAST of Carg12889 vs. TrEMBL
Match: tr|Q84KA9|Q84KA9_CUCME (RING/c3HC4/PHD zinc finger-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 1.9e-147
Identity = 272/327 (83.18%), Postives = 293/327 (89.60%), Query Frame = 0


Query: 52  ALFFVAFFSVYLRHCNDSQSNSVRPVTAAA-RSRRAARGLDPAVIETFPTLIYSDVKQHK 111
           ALFF+AFFSVY+RHCNDS SN+VRP+TAAA RSRRA RGLDPAVIETFPTLIYSDVK+HK
Sbjct: 57  ALFFMAFFSVYIRHCNDSPSNTVRPITAAAGRSRRATRGLDPAVIETFPTLIYSDVKEHK 116

Query: 112 IGKSTLECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTES 171
           IGKS LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASH+TCPVCRANLSPQ T+S
Sbjct: 117 IGKSALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHSTCPVCRANLSPQPTDS 176

Query: 172 VHRVEDSAAVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNR 231
           VHR +DS AVV+SD + GDIEAQ+NDVVSE   T APP +Q            +NK+LNR
Sbjct: 177 VHRADDSNAVVNSDTDGGDIEAQSNDVVSE---TTAPPTVQ-XXXXXXXXXXXSNKALNR 236

Query: 232 NRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVI 291
            RTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLP+EIRKQVVNRKL+RATSMV+
Sbjct: 237 TRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLHRATSMVV 296

Query: 292 LARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRG 351
           LARQSS MRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLS+TPPFFTRMSSMKTPRG
Sbjct: 297 LARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTPRG 356

Query: 352 GSIHGEPGLGRELGQGSSTAESSRLPV 378
           GS   EPG GRELGQG++  +SSRLPV
Sbjct: 357 GSNRAEPGSGRELGQGNTAVDSSRLPV 379

[Close]

BLAST of Carg12889 vs. TrEMBL
Match: tr|A0A251NZ83|A0A251NZ83_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G329500 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.2e-102
Identity = 221/379 (58.31%), Postives = 268/379 (70.71%), Query Frame = 0


Query: 3   SFTAVHAAL-FFLLSVSVSAQSQFSPDPRSDPYQY-RLSGSMAVIIVXXXAALFFVAFFS 62
           S+TA + AL FF L +   A S     P  DPY+Y R S SMA+IIV   AALF + FFS
Sbjct: 6   SYTAKNGALTFFFLLLLSPAISPVGAQPTPDPYRYQRFSPSMAIIIVVLIAALFLMGFFS 65

Query: 63  VYLRHCNDSQSNSVRP-VTAAARSRR-AARGLDPAVIETFPTLIYSDVKQHKIGKSTLEC 122
           +Y+RHC+D+QS S+R   T   RSRR A+RGLD AVI+TFPTL YS VK  KIGK  LEC
Sbjct: 66  IYIRHCSDAQSASIRAGGTHTGRSRRGASRGLDAAVIDTFPTLEYSAVKGLKIGKGALEC 125

Query: 123 AVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDSA 182
           AVCLNEFED ETLRLIPKCDHVFHPECID WLASHTTCPVCRANL PQ ++ + ++    
Sbjct: 126 AVCLNEFEDVETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPSDPITQL---- 185

Query: 183 AVVDSDENRGDIEAQNNDVVSETNPTAAPPPIQIPVESELNTTTAANKSLNRNRTRGSRS 242
            V++S+    D+EAQN+ V  E+ P       +   + EL    + N++LNRNRTRGSRS
Sbjct: 186 TVLNSEHVPVDVEAQNDAV--ESAPETDEGCQETVEQPEL---LSLNQTLNRNRTRGSRS 245

Query: 243 NRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMVILARQSSLM 302
           NRLR LFPRSHSTGHS++QPGEDTERFTLRLP+E+RKQ++NRKLNR+ S+++L R+ S  
Sbjct: 246 NRLRRLFPRSHSTGHSVIQPGEDTERFTLRLPVEVRKQIMNRKLNRSVSLLVLPREGSSR 305

Query: 303 RGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPRGGSIHGEPG 362
           RG R G   GS+R   YRRLERLDR  KSDRWV S TP F TRMSS+ +PR  +  GE  
Sbjct: 306 RGPRMGESGGSNRLMNYRRLERLDRGFKSDRWVFSRTPSFLTRMSSLLSPRVAANDGE-- 365

Query: 363 LGRELGQGSSTAESSRLPV 378
             + +  G S + S R PV
Sbjct: 366 --KAVEPGMSRSGSVRPPV 371

[Close]

BLAST of Carg12889 vs. TrEMBL
Match: tr|A0A2P5C6E2|A0A2P5C6E2_9ROSA (Zinc finger transcription factor OS=Trema orientalis OX=63057 GN=TorZnF28 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.5e-96
Identity = 217/389 (55.78%), Postives = 261/389 (67.10%), Query Frame = 0


Query: 2   ASFTAVHAALFFLLSVSVSAQSQFSPDPRSDPYQY-RLSGSMAVIIVXXXAALFFVAFFS 61
           ++F ++   L  LLS ++           +DPY Y R S SMA+IIV   AALFF+ FFS
Sbjct: 4   SNFPSIPFFLVLLLSPAIPYAGAQPAGTSTDPYGYNRFSPSMAIIIVVLIAALFFMGFFS 63

Query: 62  VYLRHCNDSQ--SNSVRPVT-AAARSRRAARGLDPAVIETFPTLIYSDVKQHKIGKSTLE 121
           +Y+RHC+D Q  +N +        RSRRAARGLD AV+ TFPTL YS VK  KIGK  LE
Sbjct: 64  IYIRHCSDGQIAANGIGSAAGGTGRSRRAARGLDAAVLATFPTLEYSAVKGLKIGKGALE 123

Query: 122 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHTTCPVCRANLSPQLTESVHRVEDS 181
           CAVCL EFEDDETLRLIPKCDHVFHPECID WL SHTTCPVCRANL P   E +H+ + S
Sbjct: 124 CAVCLCEFEDDETLRLIPKCDHVFHPECIDTWLESHTTCPVCRANLVPGPDEPLHQPDLS 183

Query: 182 AAVVDSDENRGDIEAQNNDVVSETNPTAA--------PPPIQIPVESELNTTTAANKSLN 241
            A    D    DIEAQN+ V  E  P AA        PP +  P    L+     NK+LN
Sbjct: 184 PA----DVAASDIEAQNDAV--EAEPAAADRTGGDQLPPSVPAPEPDVLD----KNKTLN 243

Query: 242 RNRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPLEIRKQVVNRKLNRATSMV 301
           RNRTRGSRS+R+R  FPRSHSTGHSLVQPGE+TERFTLRLP E+RK+++NR+L RATS++
Sbjct: 244 RNRTRGSRSSRMRRFFPRSHSTGHSLVQPGENTERFTLRLPAEVRKEILNRQLQRATSLL 303

Query: 302 ILARQSSLMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSITPPFFTRMSSMKTPR 361
           +L R++S  RGYR G GEGSSRG  + R  RLDR +KSDRWV S+   FF RMSSMK+P+
Sbjct: 304 VLPRENSSRRGYRTG-GEGSSRGGRFTR--RLDRLTKSDRWVFSM--GFFNRMSSMKSPK 363

Query: 362 GGSIHGE-PGLGRELGQGSSTAESSRLPV 378
             +  G     GR +G     ++S R PV
Sbjct: 364 VAATDGAGTSSGRVIGPDVPRSDSVRPPV 377

The following BLAST results are available for this feature:

BLAST of Carg12889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545580.1	1.2e-206	99.73	E3 ubiquitin-protein ligase ATL6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999119.1	4.4e-204	98.14	E3 ubiquitin-protein ligase ATL6-like [Cucurbita maxima]	[more]
XP_022946284.1	6.0e-193	94.20	E3 ubiquitin-protein ligase ATL6-like [Cucurbita moschata]	[more]
XP_004139190.1	2.1e-153	85.93	PREDICTED: E3 ubiquitin-protein ligase ATL6 [Cucumis sativus]	[more]
KGN60885.1	2.1e-153	85.93	hypothetical protein Csa_2G021560 [Cucumis sativus]	[more]

BLAST of Carg12889 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05200.1	5.1e-69	47.55	RING/U-box superfamily protein	[more]
AT5G27420.1	4.6e-62	43.38	carbon/nitrogen insensitive 1	[more]
AT1G72200.1	1.4e-50	40.99	RING/U-box superfamily protein	[more]
AT1G22500.1	1.1e-44	38.94	RING/U-box superfamily protein	[more]
AT2G35000.1	9.0e-42	38.61	RING/U-box superfamily protein	[more]

BLAST of Carg12889 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RXX9\|ATL6_ARATH	9.1e-68	47.55	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
sp\|Q8LGA5\|ATL31_ARATH	8.3e-61	43.38	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ...	[more]
sp\|Q84W40\|ATL11_ARATH	2.5e-49	40.99	RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2	[more]
sp\|Q9SK92\|ATL15_ARATH	2.0e-43	38.94	E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 ...	[more]
sp\|O64763\|ATL9_ARATH	1.6e-40	38.61	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV...	[more]

BLAST of Carg12889 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFQ4\|A0A0A0LFQ4_CUCSA	1.4e-153	85.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021560 PE=4 SV=1	[more]
tr\|A0A1S3C0V4\|A0A1S3C0V4_CUCME	1.9e-147	83.18	E3 ubiquitin-protein ligase ATL6 OS=Cucumis melo OX=3656 GN=LOC103495208 PE=4 SV...	[more]
tr\|Q84KA9\|Q84KA9_CUCME	1.9e-147	83.18	RING/c3HC4/PHD zinc finger-like protein OS=Cucumis melo subsp. melo OX=412675 PE...	[more]
tr\|A0A251NZ83\|A0A251NZ83_PRUPE	7.2e-102	58.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G329500 PE=4 SV=1	[more]
tr\|A0A2P5C6E2\|A0A2P5C6E2_9ROSA	1.5e-96	55.78	Zinc finger transcription factor OS=Trema orientalis OX=63057 GN=TorZnF28 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12889-RA	Carg12889-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..159 e-value: 5.3E-6 score: 35.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 e-value: 5.5E-14 score: 52.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..160 score: 12.873
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 78..167 e-value: 3.5E-21 score: 76.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..377
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 14..221
None	No IPR available	PANTHER	PTHR14155:SF263	E3 UBIQUITIN-PROTEIN LIGASE ATL31-RELATED	coord: 14..221
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 117..160 e-value: 2.42825E-20 score: 82.3579
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 117..166

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12889	Cla019872	Watermelon (97103) v1	carwmB0907
Carg12889	Csa2G021560	Cucumber (Chinese Long) v2	carcuB0917
Carg12889	MELO3C004286	Melon (DHL92) v3.5.1	carmeB0893
Carg12889	ClCG02G015970	Watermelon (Charleston Gray)	carwcgB0883
Carg12889	CSPI02G03750	Wild cucumber (PI 183967)	carcpiB0938
Carg12889	Cucsa.091660	Cucumber (Gy14) v1	carcgyB1020
Carg12889	CmaCh05G011520	Cucurbita maxima (Rimu)	carcmaB1246
Carg12889	CmoCh05G011630	Cucurbita moschata (Rifu)	carcmoB1216
Carg12889	Lsi11G005240	Bottle gourd (USVL1VR-Ls)	carlsiB822
Carg12889	Cp4.1LG11g09420	Cucurbita pepo (Zucchini)	carcpeB1252
Carg12889	CsGy2G003840	Cucumber (Gy14) v2	carcgybB0890
Carg12889	MELO3C004286.2	Melon (DHL92) v3.6.1	carmedB0900
Carg12889	CsaV3_2G005080	Cucumber (Chinese Long) v3	carcucB0940
Carg12889	Cla97C02G041740	Watermelon (97103) v2	carwmbB0946
Carg12889	Bhi05G001660	Wax gourd	carwgoB1046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12889	Cucurbita maxima (Rimu)	carcmaB1241
Carg12889	Cucurbita moschata (Rifu)	carcmoB1212
Carg12889	Cucurbita pepo (Zucchini)	carcpeB1256
Carg12889	Watermelon (97103) v2	carwmbB0949
Carg12889	Silver-seed gourd	carcarB587