Carg12425 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12425
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING finger protein
Location	Cucurbita_argyrosperma_scaffold_074 : 902738 .. 904993 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGAAAAACCGGCGTTTGCTTGTGCTTTTGCTTGATCAGTTCGAAAGAATTTCGGATTATCGATTACGAGATTTTGTTTTTTGGTTGATTTTTTGATGTTAGATTATGAGGATAATCTGTAGGGTTTCGGTTCTAGATTTTGATTCTACTTGATCGATCATTCGTTTTCGTTGGATTGGATTTTTCTTTTCCGGGAAAATTCGACCGCCATGGGAAAGCTTTCGTTCAAGGATTCGCTCAAAGCGCTTGAAGCCGATGTACAGCATGCCAATACTCTGTAACTTTCTTCTTCATTCTCTTTGAGAAACGAAATTTTCGATTTGTATGGAGAATCTTTGTTTCTGCAATTTTTGGCCGTAAATTCCACTCTGAAAACACCGATGAGTTAATAAACTGATTCTGGCATGTTTATGGCTTGATTTTTCTTGTTAATTGGTTCTTTCTCTGGTTTTGTCTAGAAGATACATATTCTACTGGCGACAGTACAAGGGACTGTTTACTTTTTGAAACTGTCTACATTATTGAATGTTGGATGAGCAATATAAATATTTTTCAGTGAATTGTCCAGTCAAATTAAGAATGATTTAGCTTCTGTACTGCTATTGAATTTCATTACTGCTTTGTGTTTTTTTGTTTTTCAATTGTTTTTTGTATCAGTGAATAGGGAAGAAATTGCATCGTTGATTGCTCTTTCTGTCTGTGTAAAAGTTGAGCAGTACGGGACTGAAGAAATATCTGAGATGAGAAAGAGGGGGGATATCAGATTGATAGCAAATTCATATGAATTAGCATTAACAAATTGTTGTGGTCAAATTTTCTCTGAGCCCTGTTTTTCTTGTTTAACCATTCCTCTTTTGTTTGCAGTGCTTTAGACTGTCCAAGAGAGAGTGATGGAGCTTGTGTTCAAATGAGAATATCTTACAGTCCTGCCGCTCCCTTTTTCCTTTTTCTTGTTCAATGGACTGACTGCCGCCTTGCTGGTGCCTTGGGGCTGCTAAGAATCCATGTCTATGTGGTATGCCTTCTACATTTTGGTACTATTTGGCAATAGTTACCAGTTAGCAGCTTTTTTGTTTGTTCATGTAGGCTTGATATTTTCTCCATAGAAGGCCTTATCTGTACTAACTTAATAAGAGGTCTGATGTTCTATTTCTTGACAATGAAGGTCAATATTGTTTAATTACTTCTTGTCGTGTAATGTTATGAAGCAGACTTATCCAGATGGAAAGACCACCATGTCCATTTATGAGCGAAAATCTAGCATTAGAGAATTTTATGGTGAGTGAGATTCTTAGATTGCATCTTAAGTATTGGAACTTAGCTTTCTGGTCTTGGTCTTGGTCTTGTTCTTGTTCTTGTTCTTTTCTGGTGGGGGTGTTAATGGATTGTTCTTCTCATCAACAGCGGTAATCTTCCCTTCTCTTCTGCAACTTCAAAAGGGCATCACAGAATTGGAAGATAGGAAACAGAAAGAGGTTTGCAATTCCAGATACAAAAGAAGGGATGAAGTTGCAAGGGGAAAACTGTCAGAAATCGACAAAGAAAGAGAAAAGGAGTGTGGAATTTGCATGGAGGTTAACAGCATTGTTGTTTTACCTCATTGCAACCATTCTTTGTGCTTGAAATGTTATCGAGATTGGTAAGTTTTAGACTATGATTTTACTTTTCAATTGAACACAATCAGCAAAAAAAGATAGAATCAAAAGTGCTTTCAAGAAAGTAGACTAAGTTTGAAATCAGATTATCTGTTGGATCTGAAAATCTTCAAAATTATCCTGATTTGATTAGTTTGCATTCAGTGCTAGCACTATTCTTAGACTCATATTCAACCTTATCTTGTCTGTCTGTTTCATCGTCCAGGCGCAGTCGTTCTCAGTCGTGTCCCTTCTGTCGGGATAGCCTCAAGCGAGTGAACTCCGGCGACCTATGGATCTACACAGACAGGAATGAAACGATTGATCTTACTTCAATTTTGCAGGAGAACCGGAAGAGACTATTTATGTACATTAATAAGTTGCCATTGGTTGTTCCAGATCCAGTGTTTCTTCCTCTTGATTCTCATATTAGATGAAGAATGGGGGACGCACCTCTTCAATCTGTGAGTAGTAGTTTCAACTTTCTGTGTAGATAATTGATTGTAGGTTGATAAGATAGGGATTGTAGAAGGGATGTTTGCCAAATTTCATTTTCTTAGTTTATCAAAGTAAATGCTTTTGGTTCACCCAATGCAAAAGTTTGTTGAAATATCAACAAAT

mRNA sequence

TGAGAAAAACCGGCGTTTGCTTGTGCTTTTGCTTGATCAGTTCGAAAGAATTTCGGATTATCGATTACGAGATTTTGTTTTTTGGTTGATTTTTTGATGTTAGATTATGAGGATAATCTGTAGGGTTTCGGTTCTAGATTTTGATTCTACTTGATCGATCATTCGTTTTCGTTGGATTGGATTTTTCTTTTCCGGGAAAATTCGACCGCCATGGGAAAGCTTTCGTTCAAGGATTCGCTCAAAGCGCTTGAAGCCGATGTACAGCATGCCAATACTCTTGCTTTAGACTGTCCAAGAGAGAGTGATGGAGCTTGTGTTCAAATGAGAATATCTTACAGTCCTGCCGCTCCCTTTTTCCTTTTTCTTGTTCAATGGACTGACTGCCGCCTTGCTGGTGCCTTGGGGCTGCTAAGAATCCATGTCTATGTGACTTATCCAGATGGAAAGACCACCATGTCCATTTATGAGCGAAAATCTAGCATTAGAGAATTTTATGCGGTAATCTTCCCTTCTCTTCTGCAACTTCAAAAGGGCATCACAGAATTGGAAGATAGGAAACAGAAAGAGGTTTGCAATTCCAGATACAAAAGAAGGGATGAAGTTGCAAGGGGAAAACTGTCAGAAATCGACAAAGAAAGAGAAAAGGAGTGTGGAATTTGCATGGAGGTTAACAGCATTGTTGTTTTACCTCATTGCAACCATTCTTTGTGCTTGAAATGTTATCGAGATTGGCGCAGTCGTTCTCAGTCGTGTCCCTTCTGTCGGGATAGCCTCAAGCGAGTGAACTCCGGCGACCTATGGATCTACACAGACAGGAATGAAACGATTGATCTTACTTCAATTTTGCAGGAGAACCGGAAGAGACTATTTATGTACATTAATAAGTTGCCATTGGTTGTTCCAGATCCAGTGTTTCTTCCTCTTGATTCTCATATTAGATGAAGAATGGGGGACGCACCTCTTCAATCTGTGAGTAGTAGTTTCAACTTTCTGTGTAGATAATTGATTGTAGGTTGATAAGATAGGGATTGTAGAAGGGATGTTTGCCAAATTTCATTTTCTTAGTTTATCAAAGTAAATGCTTTTGGTTCACCCAATGCAAAAGTTTGTTGAAATATCAACAAAT

Coding sequence (CDS)

ATGGGAAAGCTTTCGTTCAAGGATTCGCTCAAAGCGCTTGAAGCCGATGTACAGCATGCCAATACTCTTGCTTTAGACTGTCCAAGAGAGAGTGATGGAGCTTGTGTTCAAATGAGAATATCTTACAGTCCTGCCGCTCCCTTTTTCCTTTTTCTTGTTCAATGGACTGACTGCCGCCTTGCTGGTGCCTTGGGGCTGCTAAGAATCCATGTCTATGTGACTTATCCAGATGGAAAGACCACCATGTCCATTTATGAGCGAAAATCTAGCATTAGAGAATTTTATGCGGTAATCTTCCCTTCTCTTCTGCAACTTCAAAAGGGCATCACAGAATTGGAAGATAGGAAACAGAAAGAGGTTTGCAATTCCAGATACAAAAGAAGGGATGAAGTTGCAAGGGGAAAACTGTCAGAAATCGACAAAGAAAGAGAAAAGGAGTGTGGAATTTGCATGGAGGTTAACAGCATTGTTGTTTTACCTCATTGCAACCATTCTTTGTGCTTGAAATGTTATCGAGATTGGCGCAGTCGTTCTCAGTCGTGTCCCTTCTGTCGGGATAGCCTCAAGCGAGTGAACTCCGGCGACCTATGGATCTACACAGACAGGAATGAAACGATTGATCTTACTTCAATTTTGCAGGAGAACCGGAAGAGACTATTTATGTACATTAATAAGTTGCCATTGGTTGTTCCAGATCCAGTGTTTCTTCCTCTTGATTCTCATATTAGATGA

Protein sequence

MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRLAGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDSHIR

Homology

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BLAST of Carg12425 vs. NCBI nr
Match: XP_022948775.1 (uncharacterized protein LOC111452344 [Cucurbita moschata])

HSP 1 Score: 493.4 bits (1269), Expect = 4.3e-136
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHC HSLCLKCYRDWRSRSQS
Sbjct: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCIHSLCLKCYRDWRSRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQEN+KRLFMYINKLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENQKRLFMYINKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

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BLAST of Carg12425 vs. NCBI nr
Match: XP_023525243.1 (uncharacterized protein LOC111788903 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.9 bits (1265), Expect = 1.3e-135
Identity = 237/243 (97.53%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRIH++VTYPDGKTTMSIYERKSSIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRIHIFVTYPDGKTTMSIYERKSSIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE  RGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS
Sbjct: 121 CNARYKRRDEFVRGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425 vs. NCBI nr
Match: XP_022998735.1 (uncharacterized protein LOC111493310 isoform X1 [Cucurbita maxima])

HSP 1 Score: 491.5 bits (1264), Expect = 1.6e-135
Identity = 237/243 (97.53%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCHL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRIH+YVTYPDGKTTMSIYERKSSIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRIHIYVTYPDGKTTMSIYERKSSIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE  RGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS
Sbjct: 121 CNARYKRRDEFVRGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425 vs. NCBI nr
Match: XP_022965010.1 (E3 ubiquitin-protein ligase rnf8-B-like [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 4.5e-125
Identity = 217/243 (89.30%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQ+ANTLALDCPRESDGACVQMR+SYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQYANTLALDCPRESDGACVQMRLSYSPAAPFFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTM+IYERK+SIREFY VIFPSLLQLQ+GITELEDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMAIYERKASIREFYVVIFPSLLQLQRGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE+ RGKLSEID EREKECGICME+N++VVLP+CNHSLCL CYRDWR+RSQS
Sbjct: 121 CNARYKRRDEIGRGKLSEIDIEREKECGICMEINTMVVLPNCNHSLCLMCYRDWRNRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E IDLTSILQ+NRKRLF YI KLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMIDLTSILQDNRKRLFAYIEKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425 vs. NCBI nr
Match: XP_022970478.1 (E3 ubiquitin-protein ligase rnf8-A-like [Cucurbita maxima])

HSP 1 Score: 454.9 bits (1169), Expect = 1.7e-124
Identity = 216/243 (88.89%), Postives = 233/243 (95.88%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQ+ANTLALDCPRESDGACVQMR+SYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQYANTLALDCPRESDGACVQMRLSYSPAAPFFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTM+IYERK+SIREFY VIFPSLLQLQ+GITELEDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMAIYERKASIREFYVVIFPSLLQLQRGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE  RGKLSEID EREKECGICME+N++VVLP+CNHSLCL CYRDWR+RSQS
Sbjct: 121 CNARYKRRDEFGRGKLSEIDIEREKECGICMEINTMVVLPNCNHSLCLMCYRDWRNRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E +DLTSILQ+NRKRLF YI KLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMVDLTSILQDNRKRLFTYIEKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425 vs. TAIR10
Match: AT5G58787.1 (RING/U-box superfamily protein)

HSP 1 Score: 376.3 bits (965), Expect = 1.4e-104
Identity = 178/245 (72.65%), Postives = 213/245 (86.94%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           M KLSFKDSLKALEAD+QHANTLALD PRE DGA VQMR+SYSP A FFLFLVQWTDC+L
Sbjct: 1   MAKLSFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AG LGLLR+ +Y+TY DGKTTMS+YERK+SIREF AVI PSL QLQ+G+T+++D KQKEV
Sbjct: 61  AGFLGLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           C  RY+++DE    ++SEI+ ERE+ECGICME+NS VVLP+C HSLC+KCYRDWR RSQS
Sbjct: 121 CKMRYRKKDE---SEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFL--PL 240
           CPFCRDSLKRV+SGDLW++ D+N+T++LT+I +EN+KRLFMYI KLPLVVPD V+   P 
Sbjct: 181 CPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVYASSPY 240

Query: 241 DSHIR 244
           D H+R
Sbjct: 241 DFHVR 242

[Close]

BLAST of Carg12425 vs. TAIR10
Match: AT3G47160.2 (RING/U-box superfamily protein)

HSP 1 Score: 367.9 bits (943), Expect = 5.0e-102
Identity = 174/257 (67.70%), Postives = 214/257 (83.27%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTL------------ALDCPRESDGACVQMRISYSPAAPF 60
           M K+SFKDSLKALEAD+QHANT+            ALD PRE DGA VQMR+SY+PAA F
Sbjct: 1   MAKVSFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQF 60

Query: 61  FLFLVQWTDCRLAGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKG 120
            LFLVQWTDC LAG LGLLR+ +Y+TY DGKTTMS+YERK+SI++FYAVIFPSLLQL++G
Sbjct: 61  LLFLVQWTDCHLAGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLERG 120

Query: 121 ITELEDRKQKEVCNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCL 180
           IT+L+DRKQKEVC  RY+ +DE  + KLSEID ERE+ECGICME+N++VVLP+C HSLC+
Sbjct: 121 ITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCI 180

Query: 181 KCYRDWRSRSQSCPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPL 240
           KCYRDW  RS+SCPFCRDSLKRVNSGDLW+  ++++T+++ +I +EN+KRLF+YI KLPL
Sbjct: 181 KCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPL 240

Query: 241 VVPDPVFL--PLDSHIR 244
           VVPD VF   P D H++
Sbjct: 241 VVPDQVFASSPYDCHVK 257

[Close]

BLAST of Carg12425 vs. TAIR10
Match: AT5G01520.1 (RING/U-box superfamily protein)

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-93
Identity = 160/233 (68.67%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 5   SFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRLAGAL 64
           SFKDSLKALEAD+Q ANTLA + P E DG  VQMR+SYSPAA  FLFL+QWTDC  AGAL
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGAL 63

Query: 65  GLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNSR 124
           GLLRI +Y  Y DGKTTMS++ERK+SIREFY V+FPSLLQL  GIT++E+RKQKE+C+ R
Sbjct: 64  GLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKR 123

Query: 125 YKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCPFC 184
           Y+++D   +GK+SEID ERE+ECGIC+E+ + VVLP CNHS+C+ CYR+WR+RSQSCPFC
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFC 183

Query: 185 RDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLP 238
           R SLKRVNSGDLWIYT   E  DL +I +EN KRL +YI+KLPLV  DP  +P
Sbjct: 184 RGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVP 236

[Close]

BLAST of Carg12425 vs. TAIR10
Match: AT1G24440.1 (RING/U-box superfamily protein)

HSP 1 Score: 208.0 bits (528), Expect = 6.6e-54
Identity = 106/254 (41.73%), Postives = 153/254 (60.24%), Query Frame = 0


Query: 3   KLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTD--CRL 62
           K S++DSLK LEAD++HAN LA + P    G  +QM++  S  APFF+FL+QW D  C L
Sbjct: 7   KSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSCLL 66

Query: 63  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELED------ 122
                   I +Y    DG+   S Y RK++IREFY VI PSL +L     +L D      
Sbjct: 67  PRYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYP 126

Query: 123 ------RKQKEVCNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCL 182
                 +KQ ++  SRY          ++ ID ERE ECGIC+E  + +VLP+C H++C+
Sbjct: 127 NPKAITKKQYDIEGSRY----------MNSIDLEREDECGICLEPCTKMVLPNCCHAMCI 186

Query: 183 KCYRDWRSRSQSCPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPL 242
           KCYR+W ++S+SCPFCR S+KRVNS DLW+ T   + +D  ++ +E+  R +++IN LP 
Sbjct: 187 KCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPK 246

[Close]

BLAST of Carg12425 vs. TAIR10
Match: AT1G13195.1 (RING/U-box superfamily protein)

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-48
Identity = 99/234 (42.31%), Postives = 141/234 (60.26%), Query Frame = 0


Query: 8   DSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTD----CRLAGA 67
           +SLK LEADVQHAN+LA   P   +   +QM++ +S  A   LFL++W D    C +   
Sbjct: 18  ESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRY 77

Query: 68  LGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNS 127
           L L  + VY    DG+  ++ + RK++I EFY VI PSL  L   + ELE          
Sbjct: 78  LNLFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGFDLKR 137

Query: 128 RYKRRDEVAR-GKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCP 187
             K+  + AR  + S    ERE+ECGIC+E  + +VLP+C HS+C+KCYR+W  +SQSCP
Sbjct: 138 LSKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCP 197

Query: 188 FCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFL 237
           FCR S+KRVNS DLW+    N+ +D  +  +E+  R ++YIN LP   P+ +F+
Sbjct: 198 FCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFV 251

[Close]

BLAST of Carg12425 vs. Swiss-Prot
Match: sp|Q9M022|AIRP2_ARATH (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-92
Identity = 160/233 (68.67%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 5   SFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRLAGAL 64
           SFKDSLKALEAD+Q ANTLA + P E DG  VQMR+SYSPAA  FLFL+QWTDC  AGAL
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGAL 63

Query: 65  GLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNSR 124
           GLLRI +Y  Y DGKTTMS++ERK+SIREFY V+FPSLLQL  GIT++E+RKQKE+C+ R
Sbjct: 64  GLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKR 123

Query: 125 YKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCPFC 184
           Y+++D   +GK+SEID ERE+ECGIC+E+ + VVLP CNHS+C+ CYR+WR+RSQSCPFC
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFC 183

Query: 185 RDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLP 238
           R SLKRVNSGDLWIYT   E  DL +I +EN KRL +YI+KLPLV  DP  +P
Sbjct: 184 RGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVP 236

[Close]

BLAST of Carg12425 vs. Swiss-Prot
Match: sp|Q13434|MKRN4_HUMAN (Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens OX=9606 GN=MKRN4P PE=5 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-07
Identity = 27/76 (35.53%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + + ++K CGICMEV         +   +L +CNH+ CLKC R WRS  +       SCP
Sbjct: 308 VQRSKDKVCGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCP 367

[Close]

BLAST of Carg12425 vs. Swiss-Prot
Match: sp|Q13064|MKRN3_HUMAN (Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens OX=9606 GN=MKRN3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + +  +K CGICMEV             +L +CNHS C++C R WRS  Q       SCP
Sbjct: 303 VQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCP 362

[Close]

BLAST of Carg12425 vs. Swiss-Prot
Match: sp|Q9UHC7|MKRN1_HUMAN (E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens OX=9606 GN=MKRN1 PE=1 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 27/76 (35.53%), Postives = 37/76 (48.68%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + + ++  CGICMEV             +L +CNH+ CLKC R WRS  Q       SCP
Sbjct: 273 VQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCP 332

[Close]

BLAST of Carg12425 vs. Swiss-Prot
Match: sp|Q9TT91|MKRN1_MACEU (E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii OX=9315 GN=MKRN1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 27/76 (35.53%), Postives = 37/76 (48.68%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + + ++  CGICMEV             +L +CNH+ CLKC R WRS  Q       SCP
Sbjct: 269 VQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCP 328

[Close]

BLAST of Carg12425 vs. TrEMBL
Match: tr|A0A0A0LY84|A0A0A0LY84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G530140 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.5e-124
Identity = 217/243 (89.30%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMR+SYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRLSYSPAAPFFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTMSIYERK+SIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMSIYERKASIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RY RRDE  RGKLSEID EREKECGICME N +VVLP+CNHSLCLKCYRDWR RSQS
Sbjct: 121 CNARYSRRDEFGRGKLSEIDIEREKECGICMEFNGMVVLPNCNHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E IDL SIL +NRKRLF YI+KLPLVVPDPVFLP+DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMIDLNSILHDNRKRLFAYIDKLPLVVPDPVFLPMDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425 vs. TrEMBL
Match: tr|A0A1S3C5C5|A0A1S3C5C5_CUCME (E3 ubiquitin-protein ligase RNF8-A OS=Cucumis melo OX=3656 GN=LOC103497086 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 4.0e-122
Identity = 214/243 (88.07%), Postives = 227/243 (93.42%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMR+SYSPAAP FLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRLSYSPAAPLFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTMSIYERK+SI+EFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRILLYVTYPDGKTTMSIYERKASIKEFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RY RRDE  RGKLSEID EREKECGICME N +VVLP+CNHSLCLKCYRDWR RSQS
Sbjct: 121 CNARYSRRDEFGRGKLSEIDIEREKECGICMEFNGMVVLPNCNHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E IDL SIL +N KRLF YI+KLPLVVPDPVFLP+DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMIDLNSILHDNCKRLFAYIDKLPLVVPDPVFLPIDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425 vs. TrEMBL
Match: tr|A0A061GW91|A0A061GW91_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_041631 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 6.2e-115
Identity = 200/243 (82.30%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGK SFKDSLKALEAD+QHANTLALD PRE DGA +QMR+SYSPAA FFLFLVQWTDC+L
Sbjct: 1   MGKSSFKDSLKALEADIQHANTLALDHPREKDGARLQMRLSYSPAAQFFLFLVQWTDCQL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +Y+TY DGKTTMS+YERK+SIREFYAVIFPSLLQLQ+GIT+LEDRKQKEV
Sbjct: 61  AGALGLLRILIYMTYADGKTTMSVYERKASIREFYAVIFPSLLQLQRGITDLEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           C  RY+R+DE  RGKLSEID ERE+ECGICME+NS+VVLP+C+HSLCLKCYRDWR RSQS
Sbjct: 121 CTMRYRRKDEFERGKLSEIDIEREEECGICMEMNSMVVLPNCSHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTD+++ +DL+SIL+EN KRLFMYI KLPLVVPDPVF+P D 
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDKSDLVDLSSILRENCKRLFMYIEKLPLVVPDPVFVPYDV 240

Query: 241 HIR 244
           H+R
Sbjct: 241 HVR 243

[Close]

BLAST of Carg12425 vs. TrEMBL
Match: tr|A0A2P6QJW4|A0A2P6QJW4_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0069171 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 7.6e-113
Identity = 196/243 (80.66%), Postives = 226/243 (93.00%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGK S+KDSLKALEAD+QHANTLALD PRE DGA +QMR+SYSP A  FLFLVQWTDC+L
Sbjct: 1   MGK-SYKDSLKALEADIQHANTLALDYPREKDGARLQMRLSYSPVANLFLFLVQWTDCQL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTMSIYER++S++EFY VIFPSLLQLQKGIT++EDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMSIYERRASVKEFYGVIFPSLLQLQKGITDMEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           C  R++R+DE+ RGKLSEID ERE+ECGICME+NS VVLP+C+HSLCLKCYRDWR RSQS
Sbjct: 121 CTVRFRRKDELERGKLSEIDMEREEECGICMELNSKVVLPNCSHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYT++++ IDL+SIL+E+RKRLFMYI+KLPLVVPDPV+LP DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTEKSDAIDLSSILREDRKRLFMYIDKLPLVVPDPVYLPYDS 240

Query: 241 HIR 244
           H+R
Sbjct: 241 HVR 242

[Close]

BLAST of Carg12425 vs. TrEMBL
Match: tr|A0A067LPP1|A0A067LPP1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08476 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 9.9e-113
Identity = 193/243 (79.42%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSF+DSLKALEAD+QHANTLALD PRE+DGA +QMR+SYSPAA FFLFLVQWTDC L
Sbjct: 1   MGKLSFRDSLKALEADIQHANTLALDYPRENDGARLQMRLSYSPAAQFFLFLVQWTDCHL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +Y+TY DGKTTMS+YERK+S+REFYAVIFPS++QLQKGIT+LED+KQ E+
Sbjct: 61  AGALGLLRILIYLTYADGKTTMSVYERKASLREFYAVIFPSIMQLQKGITDLEDKKQNEI 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN RYKR+DE+ RGKLSEID ERE+ECGICME+ S  VLP+CNHSLCLKC+RDWR RSQS
Sbjct: 121 CNIRYKRKDELERGKLSEIDIEREEECGICMEIGSKAVLPNCNHSLCLKCFRDWRERSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTD+ +T+DL+ IL+EN KRLFMYI+KLPL+VPD V +P DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDKCDTVDLSLILRENSKRLFMYIDKLPLIVPDSVIVPYDS 240

Query: 241 HIR 244
           H+R
Sbjct: 241 HVR 243

The following BLAST results are available for this feature:

BLAST of Carg12425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948775.1	4.3e-136	98.77	uncharacterized protein LOC111452344 [Cucurbita moschata]	[more]
XP_023525243.1	1.3e-135	97.53	uncharacterized protein LOC111788903 [Cucurbita pepo subsp. pepo]	[more]
XP_022998735.1	1.6e-135	97.53	uncharacterized protein LOC111493310 isoform X1 [Cucurbita maxima]	[more]
XP_022965010.1	4.5e-125	89.30	E3 ubiquitin-protein ligase rnf8-B-like [Cucurbita moschata]	[more]
XP_022970478.1	1.7e-124	88.89	E3 ubiquitin-protein ligase rnf8-A-like [Cucurbita maxima]	[more]

BLAST of Carg12425 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58787.1	1.4e-104	72.65	RING/U-box superfamily protein	[more]
AT3G47160.2	5.0e-102	67.70	RING/U-box superfamily protein	[more]
AT5G01520.1	1.5e-93	68.67	RING/U-box superfamily protein	[more]
AT1G24440.1	6.6e-54	41.73	RING/U-box superfamily protein	[more]
AT1G13195.1	2.4e-48	42.31	RING/U-box superfamily protein	[more]

BLAST of Carg12425 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M022\|AIRP2_ARATH	2.6e-92	68.67	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 ...	[more]
sp\|Q13434\|MKRN4_HUMAN	5.8e-07	35.53	Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens OX=9606 GN=MKRN4P...	[more]
sp\|Q13064\|MKRN3_HUMAN	1.7e-06	35.53	Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens OX=9606 GN=MKRN3 ...	[more]
sp\|Q9UHC7\|MKRN1_HUMAN	2.2e-06	35.53	E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens OX=9606 GN=MKRN1 PE=1 SV=3	[more]
sp\|Q9TT91\|MKRN1_MACEU	2.2e-06	35.53	E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii OX=9315 GN=MKRN1 PE=2 ...	[more]

BLAST of Carg12425 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY84\|A0A0A0LY84_CUCSA	2.5e-124	89.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G530140 PE=4 SV=1	[more]
tr\|A0A1S3C5C5\|A0A1S3C5C5_CUCME	4.0e-122	88.07	E3 ubiquitin-protein ligase RNF8-A OS=Cucumis melo OX=3656 GN=LOC103497086 PE=4 ...	[more]
tr\|A0A061GW91\|A0A061GW91_THECC	6.2e-115	82.30	RING/U-box superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_04163...	[more]
tr\|A0A2P6QJW4\|A0A2P6QJW4_ROSCH	7.6e-113	80.66	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
tr\|A0A067LPP1\|A0A067LPP1_JATCU	9.9e-113	79.42	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08476 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12425-RA	Carg12425-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 147..184 e-value: 6.7E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 147..185 score: 11.973
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 144..190 e-value: 2.2E-9 score: 37.0
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 4..243
None	No IPR available	PANTHER	PTHR15315:SF38	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 4..243
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 135..190
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 129..194 e-value: 4.9E-14 score: 53.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 162..171

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12425	Cla017984	Watermelon (97103) v1	carwmB0438
Carg12425	Cla008169	Watermelon (97103) v1	carwmB0440
Carg12425	Csa1G530140	Cucumber (Chinese Long) v2	carcuB0471
Carg12425	Csa3G731740	Cucumber (Chinese Long) v2	carcuB0473
Carg12425	MELO3C009172	Melon (DHL92) v3.5.1	carmeB0450
Carg12425	MELO3C020554	Melon (DHL92) v3.5.1	carmeB0449
Carg12425	ClCG10G022090	Watermelon (Charleston Gray)	carwcgB0431
Carg12425	ClCG03G000800	Watermelon (Charleston Gray)	carwcgB0436
Carg12425	CSPI01G23830	Wild cucumber (PI 183967)	carcpiB0476
Carg12425	CSPI03G31330	Wild cucumber (PI 183967)	carcpiB0478
Carg12425	Cucsa.176320	Cucumber (Gy14) v1	carcgyB0510
Carg12425	Cucsa.147020	Cucumber (Gy14) v1	carcgyB0509
Carg12425	CmaCh14G000680	Cucurbita maxima (Rimu)	carcmaB0612
Carg12425	CmaCh01G006590	Cucurbita maxima (Rimu)	carcmaB0613
Carg12425	CmaCh13G000700	Cucurbita maxima (Rimu)	carcmaB0610
Carg12425	CmoCh14G000630	Cucurbita moschata (Rifu)	carcmoB0595
Carg12425	CmoCh13G000590	Cucurbita moschata (Rifu)	carcmoB0594
Carg12425	CmoCh01G006900	Cucurbita moschata (Rifu)	carcmoB0596
Carg12425	Lsi02G012880	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12425	Cp4.1LG02g11770	Cucurbita pepo (Zucchini)	carcpeB0621
Carg12425	Cp4.1LG20g08050	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12425	CsGy1G023310	Cucumber (Gy14) v2	carcgybB0448
Carg12425	MELO3C009172.2	Melon (DHL92) v3.6.1	carmedB0453
Carg12425	MELO3C020554.2	Melon (DHL92) v3.6.1	carmedB0451
Carg12425	CsaV3_1G036140	Cucumber (Chinese Long) v3	carcucB0472
Carg12425	Cla97C10G205340	Watermelon (97103) v2	carwmbB0463
Carg12425	Cla97C03G051610	Watermelon (97103) v2	carwmbB0467
Carg12425	Bhi08G000425	Wax gourd	carwgoB0535

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12425	Carg20605	Silver-seed gourd	carcarB408
Carg12425	Carg12481	Silver-seed gourd	carcarB449

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12425	Silver-seed gourd	carcarB192
Carg12425	Cucurbita pepo (Zucchini)	carcpeB0619