Carg12425-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12425-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING finger protein
Location	Cucurbita_argyrosperma_scaffold_074 : 902738 .. 904993 (-)
Sequence length	1126

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGAAAAACCGGCGTTTGCTTGTGCTTTTGCTTGATCAGTTCGAAAGAATTTCGGATTATCGATTACGAGATTTTGTTTTTTGGTTGATTTTTTGATGTTAGATTATGAGGATAATCTGTAGGGTTTCGGTTCTAGATTTTGATTCTACTTGATCGATCATTCGTTTTCGTTGGATTGGATTTTTCTTTTCCGGGAAAATTCGACCGCCATGGGAAAGCTTTCGTTCAAGGATTCGCTCAAAGCGCTTGAAGCCGATGTACAGCATGCCAATACTCTGTAACTTTCTTCTTCATTCTCTTTGAGAAACGAAATTTTCGATTTGTATGGAGAATCTTTGTTTCTGCAATTTTTGGCCGTAAATTCCACTCTGAAAACACCGATGAGTTAATAAACTGATTCTGGCATGTTTATGGCTTGATTTTTCTTGTTAATTGGTTCTTTCTCTGGTTTTGTCTAGAAGATACATATTCTACTGGCGACAGTACAAGGGACTGTTTACTTTTTGAAACTGTCTACATTATTGAATGTTGGATGAGCAATATAAATATTTTTCAGTGAATTGTCCAGTCAAATTAAGAATGATTTAGCTTCTGTACTGCTATTGAATTTCATTACTGCTTTGTGTTTTTTTGTTTTTCAATTGTTTTTTGTATCAGTGAATAGGGAAGAAATTGCATCGTTGATTGCTCTTTCTGTCTGTGTAAAAGTTGAGCAGTACGGGACTGAAGAAATATCTGAGATGAGAAAGAGGGGGGATATCAGATTGATAGCAAATTCATATGAATTAGCATTAACAAATTGTTGTGGTCAAATTTTCTCTGAGCCCTGTTTTTCTTGTTTAACCATTCCTCTTTTGTTTGCAGTGCTTTAGACTGTCCAAGAGAGAGTGATGGAGCTTGTGTTCAAATGAGAATATCTTACAGTCCTGCCGCTCCCTTTTTCCTTTTTCTTGTTCAATGGACTGACTGCCGCCTTGCTGGTGCCTTGGGGCTGCTAAGAATCCATGTCTATGTGGTATGCCTTCTACATTTTGGTACTATTTGGCAATAGTTACCAGTTAGCAGCTTTTTTGTTTGTTCATGTAGGCTTGATATTTTCTCCATAGAAGGCCTTATCTGTACTAACTTAATAAGAGGTCTGATGTTCTATTTCTTGACAATGAAGGTCAATATTGTTTAATTACTTCTTGTCGTGTAATGTTATGAAGCAGACTTATCCAGATGGAAAGACCACCATGTCCATTTATGAGCGAAAATCTAGCATTAGAGAATTTTATGGTGAGTGAGATTCTTAGATTGCATCTTAAGTATTGGAACTTAGCTTTCTGGTCTTGGTCTTGGTCTTGTTCTTGTTCTTGTTCTTTTCTGGTGGGGGTGTTAATGGATTGTTCTTCTCATCAACAGCGGTAATCTTCCCTTCTCTTCTGCAACTTCAAAAGGGCATCACAGAATTGGAAGATAGGAAACAGAAAGAGGTTTGCAATTCCAGATACAAAAGAAGGGATGAAGTTGCAAGGGGAAAACTGTCAGAAATCGACAAAGAAAGAGAAAAGGAGTGTGGAATTTGCATGGAGGTTAACAGCATTGTTGTTTTACCTCATTGCAACCATTCTTTGTGCTTGAAATGTTATCGAGATTGGTAAGTTTTAGACTATGATTTTACTTTTCAATTGAACACAATCAGCAAAAAAAGATAGAATCAAAAGTGCTTTCAAGAAAGTAGACTAAGTTTGAAATCAGATTATCTGTTGGATCTGAAAATCTTCAAAATTATCCTGATTTGATTAGTTTGCATTCAGTGCTAGCACTATTCTTAGACTCATATTCAACCTTATCTTGTCTGTCTGTTTCATCGTCCAGGCGCAGTCGTTCTCAGTCGTGTCCCTTCTGTCGGGATAGCCTCAAGCGAGTGAACTCCGGCGACCTATGGATCTACACAGACAGGAATGAAACGATTGATCTTACTTCAATTTTGCAGGAGAACCGGAAGAGACTATTTATGTACATTAATAAGTTGCCATTGGTTGTTCCAGATCCAGTGTTTCTTCCTCTTGATTCTCATATTAGATGAAGAATGGGGGACGCACCTCTTCAATCTGTGAGTAGTAGTTTCAACTTTCTGTGTAGATAATTGATTGTAGGTTGATAAGATAGGGATTGTAGAAGGGATGTTTGCCAAATTTCATTTTCTTAGTTTATCAAAGTAAATGCTTTTGGTTCACCCAATGCAAAAGTTTGTTGAAATATCAACAAAT

mRNA sequence

TGAGAAAAACCGGCGTTTGCTTGTGCTTTTGCTTGATCAGTTCGAAAGAATTTCGGATTATCGATTACGAGATTTTGTTTTTTGGTTGATTTTTTGATGTTAGATTATGAGGATAATCTGTAGGGTTTCGGTTCTAGATTTTGATTCTACTTGATCGATCATTCGTTTTCGTTGGATTGGATTTTTCTTTTCCGGGAAAATTCGACCGCCATGGGAAAGCTTTCGTTCAAGGATTCGCTCAAAGCGCTTGAAGCCGATGTACAGCATGCCAATACTCTTGCTTTAGACTGTCCAAGAGAGAGTGATGGAGCTTGTGTTCAAATGAGAATATCTTACAGTCCTGCCGCTCCCTTTTTCCTTTTTCTTGTTCAATGGACTGACTGCCGCCTTGCTGGTGCCTTGGGGCTGCTAAGAATCCATGTCTATGTGACTTATCCAGATGGAAAGACCACCATGTCCATTTATGAGCGAAAATCTAGCATTAGAGAATTTTATGCGGTAATCTTCCCTTCTCTTCTGCAACTTCAAAAGGGCATCACAGAATTGGAAGATAGGAAACAGAAAGAGGTTTGCAATTCCAGATACAAAAGAAGGGATGAAGTTGCAAGGGGAAAACTGTCAGAAATCGACAAAGAAAGAGAAAAGGAGTGTGGAATTTGCATGGAGGTTAACAGCATTGTTGTTTTACCTCATTGCAACCATTCTTTGTGCTTGAAATGTTATCGAGATTGGCGCAGTCGTTCTCAGTCGTGTCCCTTCTGTCGGGATAGCCTCAAGCGAGTGAACTCCGGCGACCTATGGATCTACACAGACAGGAATGAAACGATTGATCTTACTTCAATTTTGCAGGAGAACCGGAAGAGACTATTTATGTACATTAATAAGTTGCCATTGGTTGTTCCAGATCCAGTGTTTCTTCCTCTTGATTCTCATATTAGATGAAGAATGGGGGACGCACCTCTTCAATCTGTGAGTAGTAGTTTCAACTTTCTGTGTAGATAATTGATTGTAGGTTGATAAGATAGGGATTGTAGAAGGGATGTTTGCCAAATTTCATTTTCTTAGTTTATCAAAGTAAATGCTTTTGGTTCACCCAATGCAAAAGTTTGTTGAAATATCAACAAAT

Coding sequence (CDS)

ATGGGAAAGCTTTCGTTCAAGGATTCGCTCAAAGCGCTTGAAGCCGATGTACAGCATGCCAATACTCTTGCTTTAGACTGTCCAAGAGAGAGTGATGGAGCTTGTGTTCAAATGAGAATATCTTACAGTCCTGCCGCTCCCTTTTTCCTTTTTCTTGTTCAATGGACTGACTGCCGCCTTGCTGGTGCCTTGGGGCTGCTAAGAATCCATGTCTATGTGACTTATCCAGATGGAAAGACCACCATGTCCATTTATGAGCGAAAATCTAGCATTAGAGAATTTTATGCGGTAATCTTCCCTTCTCTTCTGCAACTTCAAAAGGGCATCACAGAATTGGAAGATAGGAAACAGAAAGAGGTTTGCAATTCCAGATACAAAAGAAGGGATGAAGTTGCAAGGGGAAAACTGTCAGAAATCGACAAAGAAAGAGAAAAGGAGTGTGGAATTTGCATGGAGGTTAACAGCATTGTTGTTTTACCTCATTGCAACCATTCTTTGTGCTTGAAATGTTATCGAGATTGGCGCAGTCGTTCTCAGTCGTGTCCCTTCTGTCGGGATAGCCTCAAGCGAGTGAACTCCGGCGACCTATGGATCTACACAGACAGGAATGAAACGATTGATCTTACTTCAATTTTGCAGGAGAACCGGAAGAGACTATTTATGTACATTAATAAGTTGCCATTGGTTGTTCCAGATCCAGTGTTTCTTCCTCTTGATTCTCATATTAGATGA

Protein sequence

MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRLAGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDSHIR

Homology

[Close]

BLAST of Carg12425-RA vs. NCBI nr
Match: XP_022948775.1 (uncharacterized protein LOC111452344 [Cucurbita moschata])

HSP 1 Score: 493.4 bits (1269), Expect = 4.3e-136
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHC HSLCLKCYRDWRSRSQS
Sbjct: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCIHSLCLKCYRDWRSRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQEN+KRLFMYINKLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENQKRLFMYINKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425-RA vs. NCBI nr
Match: XP_023525243.1 (uncharacterized protein LOC111788903 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.9 bits (1265), Expect = 1.3e-135
Identity = 237/243 (97.53%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRIH++VTYPDGKTTMSIYERKSSIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRIHIFVTYPDGKTTMSIYERKSSIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE  RGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS
Sbjct: 121 CNARYKRRDEFVRGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425-RA vs. NCBI nr
Match: XP_022998735.1 (uncharacterized protein LOC111493310 isoform X1 [Cucurbita maxima])

HSP 1 Score: 491.5 bits (1264), Expect = 1.6e-135
Identity = 237/243 (97.53%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCHL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRIH+YVTYPDGKTTMSIYERKSSIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRIHIYVTYPDGKTTMSIYERKSSIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE  RGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS
Sbjct: 121 CNARYKRRDEFVRGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425-RA vs. NCBI nr
Match: XP_022965010.1 (E3 ubiquitin-protein ligase rnf8-B-like [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 4.5e-125
Identity = 217/243 (89.30%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQ+ANTLALDCPRESDGACVQMR+SYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQYANTLALDCPRESDGACVQMRLSYSPAAPFFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTM+IYERK+SIREFY VIFPSLLQLQ+GITELEDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMAIYERKASIREFYVVIFPSLLQLQRGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE+ RGKLSEID EREKECGICME+N++VVLP+CNHSLCL CYRDWR+RSQS
Sbjct: 121 CNARYKRRDEIGRGKLSEIDIEREKECGICMEINTMVVLPNCNHSLCLMCYRDWRNRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E IDLTSILQ+NRKRLF YI KLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMIDLTSILQDNRKRLFAYIEKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425-RA vs. NCBI nr
Match: XP_022970478.1 (E3 ubiquitin-protein ligase rnf8-A-like [Cucurbita maxima])

HSP 1 Score: 454.9 bits (1169), Expect = 1.7e-124
Identity = 216/243 (88.89%), Postives = 233/243 (95.88%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQ+ANTLALDCPRESDGACVQMR+SYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQYANTLALDCPRESDGACVQMRLSYSPAAPFFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTM+IYERK+SIREFY VIFPSLLQLQ+GITELEDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMAIYERKASIREFYVVIFPSLLQLQRGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RYKRRDE  RGKLSEID EREKECGICME+N++VVLP+CNHSLCL CYRDWR+RSQS
Sbjct: 121 CNARYKRRDEFGRGKLSEIDIEREKECGICMEINTMVVLPNCNHSLCLMCYRDWRNRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E +DLTSILQ+NRKRLF YI KLPLVVPDPVFLPLDS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMVDLTSILQDNRKRLFTYIEKLPLVVPDPVFLPLDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425-RA vs. TAIR10
Match: AT5G58787.1 (RING/U-box superfamily protein)

HSP 1 Score: 376.3 bits (965), Expect = 1.4e-104
Identity = 178/245 (72.65%), Postives = 213/245 (86.94%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           M KLSFKDSLKALEAD+QHANTLALD PRE DGA VQMR+SYSP A FFLFLVQWTDC+L
Sbjct: 1   MAKLSFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AG LGLLR+ +Y+TY DGKTTMS+YERK+SIREF AVI PSL QLQ+G+T+++D KQKEV
Sbjct: 61  AGFLGLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           C  RY+++DE    ++SEI+ ERE+ECGICME+NS VVLP+C HSLC+KCYRDWR RSQS
Sbjct: 121 CKMRYRKKDE---SEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFL--PL 240
           CPFCRDSLKRV+SGDLW++ D+N+T++LT+I +EN+KRLFMYI KLPLVVPD V+   P 
Sbjct: 181 CPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVYASSPY 240

Query: 241 DSHIR 244
           D H+R
Sbjct: 241 DFHVR 242

[Close]

BLAST of Carg12425-RA vs. TAIR10
Match: AT3G47160.2 (RING/U-box superfamily protein)

HSP 1 Score: 367.9 bits (943), Expect = 5.0e-102
Identity = 174/257 (67.70%), Postives = 214/257 (83.27%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTL------------ALDCPRESDGACVQMRISYSPAAPF 60
           M K+SFKDSLKALEAD+QHANT+            ALD PRE DGA VQMR+SY+PAA F
Sbjct: 1   MAKVSFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQF 60

Query: 61  FLFLVQWTDCRLAGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKG 120
            LFLVQWTDC LAG LGLLR+ +Y+TY DGKTTMS+YERK+SI++FYAVIFPSLLQL++G
Sbjct: 61  LLFLVQWTDCHLAGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLERG 120

Query: 121 ITELEDRKQKEVCNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCL 180
           IT+L+DRKQKEVC  RY+ +DE  + KLSEID ERE+ECGICME+N++VVLP+C HSLC+
Sbjct: 121 ITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCI 180

Query: 181 KCYRDWRSRSQSCPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPL 240
           KCYRDW  RS+SCPFCRDSLKRVNSGDLW+  ++++T+++ +I +EN+KRLF+YI KLPL
Sbjct: 181 KCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPL 240

Query: 241 VVPDPVFL--PLDSHIR 244
           VVPD VF   P D H++
Sbjct: 241 VVPDQVFASSPYDCHVK 257

[Close]

BLAST of Carg12425-RA vs. TAIR10
Match: AT5G01520.1 (RING/U-box superfamily protein)

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-93
Identity = 160/233 (68.67%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 5   SFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRLAGAL 64
           SFKDSLKALEAD+Q ANTLA + P E DG  VQMR+SYSPAA  FLFL+QWTDC  AGAL
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGAL 63

Query: 65  GLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNSR 124
           GLLRI +Y  Y DGKTTMS++ERK+SIREFY V+FPSLLQL  GIT++E+RKQKE+C+ R
Sbjct: 64  GLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKR 123

Query: 125 YKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCPFC 184
           Y+++D   +GK+SEID ERE+ECGIC+E+ + VVLP CNHS+C+ CYR+WR+RSQSCPFC
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFC 183

Query: 185 RDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLP 238
           R SLKRVNSGDLWIYT   E  DL +I +EN KRL +YI+KLPLV  DP  +P
Sbjct: 184 RGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVP 236

[Close]

BLAST of Carg12425-RA vs. TAIR10
Match: AT1G24440.1 (RING/U-box superfamily protein)

HSP 1 Score: 208.0 bits (528), Expect = 6.6e-54
Identity = 106/254 (41.73%), Postives = 153/254 (60.24%), Query Frame = 0


Query: 3   KLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTD--CRL 62
           K S++DSLK LEAD++HAN LA + P    G  +QM++  S  APFF+FL+QW D  C L
Sbjct: 7   KSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSCLL 66

Query: 63  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELED------ 122
                   I +Y    DG+   S Y RK++IREFY VI PSL +L     +L D      
Sbjct: 67  PRYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYP 126

Query: 123 ------RKQKEVCNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCL 182
                 +KQ ++  SRY          ++ ID ERE ECGIC+E  + +VLP+C H++C+
Sbjct: 127 NPKAITKKQYDIEGSRY----------MNSIDLEREDECGICLEPCTKMVLPNCCHAMCI 186

Query: 183 KCYRDWRSRSQSCPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPL 242
           KCYR+W ++S+SCPFCR S+KRVNS DLW+ T   + +D  ++ +E+  R +++IN LP 
Sbjct: 187 KCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPK 246

[Close]

BLAST of Carg12425-RA vs. TAIR10
Match: AT1G13195.1 (RING/U-box superfamily protein)

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-48
Identity = 99/234 (42.31%), Postives = 141/234 (60.26%), Query Frame = 0


Query: 8   DSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTD----CRLAGA 67
           +SLK LEADVQHAN+LA   P   +   +QM++ +S  A   LFL++W D    C +   
Sbjct: 18  ESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRY 77

Query: 68  LGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNS 127
           L L  + VY    DG+  ++ + RK++I EFY VI PSL  L   + ELE          
Sbjct: 78  LNLFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGFDLKR 137

Query: 128 RYKRRDEVAR-GKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCP 187
             K+  + AR  + S    ERE+ECGIC+E  + +VLP+C HS+C+KCYR+W  +SQSCP
Sbjct: 138 LSKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCP 197

Query: 188 FCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFL 237
           FCR S+KRVNS DLW+    N+ +D  +  +E+  R ++YIN LP   P+ +F+
Sbjct: 198 FCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFV 251

[Close]

BLAST of Carg12425-RA vs. Swiss-Prot
Match: sp|Q9M022|AIRP2_ARATH (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-92
Identity = 160/233 (68.67%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 5   SFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRLAGAL 64
           SFKDSLKALEAD+Q ANTLA + P E DG  VQMR+SYSPAA  FLFL+QWTDC  AGAL
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGAL 63

Query: 65  GLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEVCNSR 124
           GLLRI +Y  Y DGKTTMS++ERK+SIREFY V+FPSLLQL  GIT++E+RKQKE+C+ R
Sbjct: 64  GLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKR 123

Query: 125 YKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQSCPFC 184
           Y+++D   +GK+SEID ERE+ECGIC+E+ + VVLP CNHS+C+ CYR+WR+RSQSCPFC
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFC 183

Query: 185 RDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLP 238
           R SLKRVNSGDLWIYT   E  DL +I +EN KRL +YI+KLPLV  DP  +P
Sbjct: 184 RGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVP 236

[Close]

BLAST of Carg12425-RA vs. Swiss-Prot
Match: sp|Q13434|MKRN4_HUMAN (Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens OX=9606 GN=MKRN4P PE=5 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-07
Identity = 27/76 (35.53%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + + ++K CGICMEV         +   +L +CNH+ CLKC R WRS  +       SCP
Sbjct: 308 VQRSKDKVCGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCP 367

[Close]

BLAST of Carg12425-RA vs. Swiss-Prot
Match: sp|Q13064|MKRN3_HUMAN (Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens OX=9606 GN=MKRN3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + +  +K CGICMEV             +L +CNHS C++C R WRS  Q       SCP
Sbjct: 303 VQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCP 362

[Close]

BLAST of Carg12425-RA vs. Swiss-Prot
Match: sp|Q9UHC7|MKRN1_HUMAN (E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens OX=9606 GN=MKRN1 PE=1 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 27/76 (35.53%), Postives = 37/76 (48.68%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + + ++  CGICMEV             +L +CNH+ CLKC R WRS  Q       SCP
Sbjct: 273 VQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCP 332

[Close]

BLAST of Carg12425-RA vs. Swiss-Prot
Match: sp|Q9TT91|MKRN1_MACEU (E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii OX=9315 GN=MKRN1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 27/76 (35.53%), Postives = 37/76 (48.68%), Query Frame = 0


Query: 139 IDKEREKECGICMEV---------NSIVVLPHCNHSLCLKCYRDWRSRSQ-------SCP 198
           + + ++  CGICMEV             +L +CNH+ CLKC R WRS  Q       SCP
Sbjct: 269 VQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCP 328

[Close]

BLAST of Carg12425-RA vs. TrEMBL
Match: tr|A0A0A0LY84|A0A0A0LY84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G530140 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.5e-124
Identity = 217/243 (89.30%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMR+SYSPAAPFFLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRLSYSPAAPFFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTMSIYERK+SIREFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMSIYERKASIREFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RY RRDE  RGKLSEID EREKECGICME N +VVLP+CNHSLCLKCYRDWR RSQS
Sbjct: 121 CNARYSRRDEFGRGKLSEIDIEREKECGICMEFNGMVVLPNCNHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E IDL SIL +NRKRLF YI+KLPLVVPDPVFLP+DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMIDLNSILHDNRKRLFAYIDKLPLVVPDPVFLPMDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425-RA vs. TrEMBL
Match: tr|A0A1S3C5C5|A0A1S3C5C5_CUCME (E3 ubiquitin-protein ligase RNF8-A OS=Cucumis melo OX=3656 GN=LOC103497086 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 4.0e-122
Identity = 214/243 (88.07%), Postives = 227/243 (93.42%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMR+SYSPAAP FLFLVQWTDC L
Sbjct: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRLSYSPAAPLFLFLVQWTDCYL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTMSIYERK+SI+EFY VIFPSLLQLQKGITELEDRKQKEV
Sbjct: 61  AGALGLLRILLYVTYPDGKTTMSIYERKASIKEFYVVIFPSLLQLQKGITELEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN+RY RRDE  RGKLSEID EREKECGICME N +VVLP+CNHSLCLKCYRDWR RSQS
Sbjct: 121 CNARYSRRDEFGRGKLSEIDIEREKECGICMEFNGMVVLPNCNHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWI+TD++E IDL SIL +N KRLF YI+KLPLVVPDPVFLP+DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIFTDKSEMIDLNSILHDNCKRLFAYIDKLPLVVPDPVFLPIDS 240

Query: 241 HIR 244
           HIR
Sbjct: 241 HIR 243

[Close]

BLAST of Carg12425-RA vs. TrEMBL
Match: tr|A0A061GW91|A0A061GW91_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_041631 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 6.2e-115
Identity = 200/243 (82.30%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGK SFKDSLKALEAD+QHANTLALD PRE DGA +QMR+SYSPAA FFLFLVQWTDC+L
Sbjct: 1   MGKSSFKDSLKALEADIQHANTLALDHPREKDGARLQMRLSYSPAAQFFLFLVQWTDCQL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +Y+TY DGKTTMS+YERK+SIREFYAVIFPSLLQLQ+GIT+LEDRKQKEV
Sbjct: 61  AGALGLLRILIYMTYADGKTTMSVYERKASIREFYAVIFPSLLQLQRGITDLEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           C  RY+R+DE  RGKLSEID ERE+ECGICME+NS+VVLP+C+HSLCLKCYRDWR RSQS
Sbjct: 121 CTMRYRRKDEFERGKLSEIDIEREEECGICMEMNSMVVLPNCSHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTD+++ +DL+SIL+EN KRLFMYI KLPLVVPDPVF+P D 
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDKSDLVDLSSILRENCKRLFMYIEKLPLVVPDPVFVPYDV 240

Query: 241 HIR 244
           H+R
Sbjct: 241 HVR 243

[Close]

BLAST of Carg12425-RA vs. TrEMBL
Match: tr|A0A2P6QJW4|A0A2P6QJW4_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0069171 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 7.6e-113
Identity = 196/243 (80.66%), Postives = 226/243 (93.00%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGK S+KDSLKALEAD+QHANTLALD PRE DGA +QMR+SYSP A  FLFLVQWTDC+L
Sbjct: 1   MGK-SYKDSLKALEADIQHANTLALDYPREKDGARLQMRLSYSPVANLFLFLVQWTDCQL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +YVTYPDGKTTMSIYER++S++EFY VIFPSLLQLQKGIT++EDRKQKEV
Sbjct: 61  AGALGLLRILIYVTYPDGKTTMSIYERRASVKEFYGVIFPSLLQLQKGITDMEDRKQKEV 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           C  R++R+DE+ RGKLSEID ERE+ECGICME+NS VVLP+C+HSLCLKCYRDWR RSQS
Sbjct: 121 CTVRFRRKDELERGKLSEIDMEREEECGICMELNSKVVLPNCSHSLCLKCYRDWRGRSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYT++++ IDL+SIL+E+RKRLFMYI+KLPLVVPDPV+LP DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTEKSDAIDLSSILREDRKRLFMYIDKLPLVVPDPVYLPYDS 240

Query: 241 HIR 244
           H+R
Sbjct: 241 HVR 242

[Close]

BLAST of Carg12425-RA vs. TrEMBL
Match: tr|A0A067LPP1|A0A067LPP1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08476 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 9.9e-113
Identity = 193/243 (79.42%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MGKLSFKDSLKALEADVQHANTLALDCPRESDGACVQMRISYSPAAPFFLFLVQWTDCRL 60
           MGKLSF+DSLKALEAD+QHANTLALD PRE+DGA +QMR+SYSPAA FFLFLVQWTDC L
Sbjct: 1   MGKLSFRDSLKALEADIQHANTLALDYPRENDGARLQMRLSYSPAAQFFLFLVQWTDCHL 60

Query: 61  AGALGLLRIHVYVTYPDGKTTMSIYERKSSIREFYAVIFPSLLQLQKGITELEDRKQKEV 120
           AGALGLLRI +Y+TY DGKTTMS+YERK+S+REFYAVIFPS++QLQKGIT+LED+KQ E+
Sbjct: 61  AGALGLLRILIYLTYADGKTTMSVYERKASLREFYAVIFPSIMQLQKGITDLEDKKQNEI 120

Query: 121 CNSRYKRRDEVARGKLSEIDKEREKECGICMEVNSIVVLPHCNHSLCLKCYRDWRSRSQS 180
           CN RYKR+DE+ RGKLSEID ERE+ECGICME+ S  VLP+CNHSLCLKC+RDWR RSQS
Sbjct: 121 CNIRYKRKDELERGKLSEIDIEREEECGICMEIGSKAVLPNCNHSLCLKCFRDWRERSQS 180

Query: 181 CPFCRDSLKRVNSGDLWIYTDRNETIDLTSILQENRKRLFMYINKLPLVVPDPVFLPLDS 240
           CPFCRDSLKRVNSGDLWIYTD+ +T+DL+ IL+EN KRLFMYI+KLPL+VPD V +P DS
Sbjct: 181 CPFCRDSLKRVNSGDLWIYTDKCDTVDLSLILRENSKRLFMYIDKLPLIVPDSVIVPYDS 240

Query: 241 HIR 244
           H+R
Sbjct: 241 HVR 243

The following BLAST results are available for this feature:

BLAST of Carg12425-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948775.1	4.3e-136	98.77	uncharacterized protein LOC111452344 [Cucurbita moschata]	[more]
XP_023525243.1	1.3e-135	97.53	uncharacterized protein LOC111788903 [Cucurbita pepo subsp. pepo]	[more]
XP_022998735.1	1.6e-135	97.53	uncharacterized protein LOC111493310 isoform X1 [Cucurbita maxima]	[more]
XP_022965010.1	4.5e-125	89.30	E3 ubiquitin-protein ligase rnf8-B-like [Cucurbita moschata]	[more]
XP_022970478.1	1.7e-124	88.89	E3 ubiquitin-protein ligase rnf8-A-like [Cucurbita maxima]	[more]

BLAST of Carg12425-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58787.1	1.4e-104	72.65	RING/U-box superfamily protein	[more]
AT3G47160.2	5.0e-102	67.70	RING/U-box superfamily protein	[more]
AT5G01520.1	1.5e-93	68.67	RING/U-box superfamily protein	[more]
AT1G24440.1	6.6e-54	41.73	RING/U-box superfamily protein	[more]
AT1G13195.1	2.4e-48	42.31	RING/U-box superfamily protein	[more]

BLAST of Carg12425-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M022\|AIRP2_ARATH	2.6e-92	68.67	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 ...	[more]
sp\|Q13434\|MKRN4_HUMAN	5.8e-07	35.53	Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens OX=9606 GN=MKRN4P...	[more]
sp\|Q13064\|MKRN3_HUMAN	1.7e-06	35.53	Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens OX=9606 GN=MKRN3 ...	[more]
sp\|Q9UHC7\|MKRN1_HUMAN	2.2e-06	35.53	E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens OX=9606 GN=MKRN1 PE=1 SV=3	[more]
sp\|Q9TT91\|MKRN1_MACEU	2.2e-06	35.53	E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii OX=9315 GN=MKRN1 PE=2 ...	[more]

BLAST of Carg12425-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY84\|A0A0A0LY84_CUCSA	2.5e-124	89.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G530140 PE=4 SV=1	[more]
tr\|A0A1S3C5C5\|A0A1S3C5C5_CUCME	4.0e-122	88.07	E3 ubiquitin-protein ligase RNF8-A OS=Cucumis melo OX=3656 GN=LOC103497086 PE=4 ...	[more]
tr\|A0A061GW91\|A0A061GW91_THECC	6.2e-115	82.30	RING/U-box superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_04163...	[more]
tr\|A0A2P6QJW4\|A0A2P6QJW4_ROSCH	7.6e-113	80.66	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
tr\|A0A067LPP1\|A0A067LPP1_JATCU	9.9e-113	79.42	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08476 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12425	Carg12425	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12425-RA	Carg12425-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12425-RA.three_prime_UTR.1	Carg12425-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12425-RA.CDS.5	Carg12425-RA.CDS.5	CDS
Carg12425-RA.CDS.4	Carg12425-RA.CDS.4	CDS
Carg12425-RA.CDS.3	Carg12425-RA.CDS.3	CDS
Carg12425-RA.CDS.2	Carg12425-RA.CDS.2	CDS
Carg12425-RA.CDS.1	Carg12425-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12425-RA.five_prime_UTR.1	Carg12425-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12425-RA.exon.5	Carg12425-RA.exon.5	exon
Carg12425-RA.exon.4	Carg12425-RA.exon.4	exon
Carg12425-RA.exon.3	Carg12425-RA.exon.3	exon
Carg12425-RA.exon.2	Carg12425-RA.exon.2	exon
Carg12425-RA.exon.1	Carg12425-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 147..184 e-value: 6.7E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 147..185 score: 11.973
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 144..190 e-value: 2.2E-9 score: 37.0
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 4..243
None	No IPR available	PANTHER	PTHR15315:SF38	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 4..243
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 135..190
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 129..194 e-value: 4.9E-14 score: 53.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 162..171