Carg12404 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12404
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	17.5 kDa class I heat shock protein-like
Location	Cucurbita_argyrosperma_scaffold_074 : 770095 .. 770547 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCATTCCAATCGGCGGCCAAGACGGCCGTATTTCCAACGGTTCCTCTTCAAGCATCCTCAATCGCTTCCCGAAATTCCCCTTCCCTCTTGACTTATGGCACGATTTCCCTTTCCCTTCCTCAATCTCGCACGCCTTTCCGGACTTCGCCTTTGGAGGCTCCGTCAACACTCGTCTCGACTGGACCGAGACGCCGAACGCGCATGTTCTGAGAGCCTCCCTTCCGGGCTTCCAAGGAGAAGACGTTCTCGTCGAGCTTCAGGATGATCGGATGCTTCAGATCAGCACCGATAGTGGCGGCTTTGTGAGTAGATTCAAGATTCCGGAGAGCGGGAAGATCGAGGAGTTGAGTGCCTTTATGGATTTTGGAGTTCTCACTGTGTTTGTTCCTAAAGAAGACGATCAGAGCAGACGCGATGTTCGAGTGGTGGAGATCACCGGCGAGTAG

mRNA sequence

ATGTCGATCATTCCAATCGGCGGCCAAGACGGCCGTATTTCCAACGGTTCCTCTTCAAGCATCCTCAATCGCTTCCCGAAATTCCCCTTCCCTCTTGACTTATGGCACGATTTCCCTTTCCCTTCCTCAATCTCGCACGCCTTTCCGGACTTCGCCTTTGGAGGCTCCGTCAACACTCGTCTCGACTGGACCGAGACGCCGAACGCGCATGTTCTGAGAGCCTCCCTTCCGGGCTTCCAAGGAGAAGACGTTCTCGTCGAGCTTCAGGATGATCGGATGCTTCAGATCAGCACCGATAGTGGCGGCTTTGTGAGTAGATTCAAGATTCCGGAGAGCGGGAAGATCGAGGAGTTGAGTGCCTTTATGGATTTTGGAGTTCTCACTGTGTTTGTTCCTAAAGAAGACGATCAGAGCAGACGCGATGTTCGAGTGGTGGAGATCACCGGCGAGTAG

Coding sequence (CDS)

ATGTCGATCATTCCAATCGGCGGCCAAGACGGCCGTATTTCCAACGGTTCCTCTTCAAGCATCCTCAATCGCTTCCCGAAATTCCCCTTCCCTCTTGACTTATGGCACGATTTCCCTTTCCCTTCCTCAATCTCGCACGCCTTTCCGGACTTCGCCTTTGGAGGCTCCGTCAACACTCGTCTCGACTGGACCGAGACGCCGAACGCGCATGTTCTGAGAGCCTCCCTTCCGGGCTTCCAAGGAGAAGACGTTCTCGTCGAGCTTCAGGATGATCGGATGCTTCAGATCAGCACCGATAGTGGCGGCTTTGTGAGTAGATTCAAGATTCCGGAGAGCGGGAAGATCGAGGAGTTGAGTGCCTTTATGGATTTTGGAGTTCTCACTGTGTTTGTTCCTAAAGAAGACGATCAGAGCAGACGCGATGTTCGAGTGGTGGAGATCACCGGCGAGTAG

Protein sequence

MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWHDFPFPSSISHAFPDFAFGGSVNTRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSAFMDFGVLTVFVPKEDDQSRRDVRVVEITGE

Homology

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BLAST of Carg12404 vs. NCBI nr
Match: XP_022949250.1 (18.5 kDa class I heat shock protein-like [Cucurbita moschata] >XP_022998185.1 18.5 kDa class I heat shock protein-like [Cucurbita maxima])

HSP 1 Score: 273.9 bits (699), Expect = 3.3e-70
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR
Sbjct: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
           LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA
Sbjct: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120

Query: 121 FMDFGVLTVFVPKEDDQSRRDVRVVEITGE 151
           FMDFGVLTVFVPKEDDQSRRDVRVVEITGE
Sbjct: 121 FMDFGVLTVFVPKEDDQSRRDVRVVEITGE 150

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BLAST of Carg12404 vs. NCBI nr
Match: XP_023524947.1 (18.5 kDa class I heat shock protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 5.3e-68
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPIGGQDGRISN SSSSI+NRFPKFPFPLDLW XXXXXXXXXXXXXDFAFGGSVNTR
Sbjct: 1   MSIIPIGGQDGRISNSSSSSIVNRFPKFPFPLDLWHXXXXXXXXXXXXXDFAFGGSVNTR 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
           LDWTETPNAHVLRA LPGFQGEDVLVELQDDRMLQIST+SGGFVSRFKIPESGKIEELSA
Sbjct: 61  LDWTETPNAHVLRAFLPGFQGEDVLVELQDDRMLQISTESGGFVSRFKIPESGKIEELSA 120

Query: 121 FMDFGVLTVFVPKEDDQSRRDVRVVEITGE 151
           FMDFGVLTVFVPKEDDQSRRDVRVVEITGE
Sbjct: 121 FMDFGVLTVFVPKEDDQSRRDVRVVEITGE 150

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BLAST of Carg12404 vs. NCBI nr
Match: ADU55785.1 (HSP16.5 [Citrullus lanatus])

HSP 1 Score: 191.0 bits (484), Expect = 2.8e-45
Identity = 117/151 (77.48%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPIGGQDGRISN S S+ILNRFP FPFPLDL   XXXXXXXXXXXX           
Sbjct: 1   MSIIPIGGQDGRISNTSPSNILNRFPNFPFPLDL---XXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
                     VLRASLPGF GEDVLVELQDDRMLQIST+SGGFVSRFKIPE+GKIEELSA
Sbjct: 61  XXXXXXXXXXVLRASLPGFGGEDVLVELQDDRMLQISTESGGFVSRFKIPETGKIEELSA 120

Query: 121 FMDFGVLTVFVPKE-DDQSRRDVRVVEITGE 151
           FMDFG+LTVFVPKE DD+SRRDVRVVEITGE
Sbjct: 121 FMDFGILTVFVPKEDDDRSRRDVRVVEITGE 148

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BLAST of Carg12404 vs. NCBI nr
Match: XP_004153731.1 (PREDICTED: 17.5 kDa class I heat shock protein-like [Cucumis sativus] >KGN65769.1 Low molecular weight heat-shock protein [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 2.2e-42
Identity = 111/151 (73.51%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPI GQDGRISN   S+ LNRFP FPFPLDLW    XXXXXXXXXX           
Sbjct: 1   MSIIPITGQDGRISNPFPSNSLNRFPNFPFPLDLW---HXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
                      LRASLPGF  EDVLVELQDDRMLQIST+SGGF+SRFKIPESGKIEELSA
Sbjct: 61  XXXXXXXXXXXLRASLPGFGSEDVLVELQDDRMLQISTESGGFLSRFKIPESGKIEELSA 120

Query: 121 FMDFGVLTVFVPK-EDDQSRRDVRVVEITGE 151
           FMDFGVLTVFVPK EDD+S RDVRVVEITGE
Sbjct: 121 FMDFGVLTVFVPKEEDDRSGRDVRVVEITGE 148

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BLAST of Carg12404 vs. NCBI nr
Match: XP_008457423.1 (PREDICTED: 17.5 kDa class I heat shock protein-like [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 8.5e-42
Identity = 115/151 (76.16%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPI GQDGR+SN S S+ILNRFP FPFPL   XXXXXXXXXXXXXX           
Sbjct: 1   MSIIPITGQDGRVSNPSPSNILNRFPNFPFPL---XXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
                     VLRASLPGF  EDVLVELQDDRMLQIST+SGGFVSRFKIPESGKIEELSA
Sbjct: 61  XXXXXXXXXXVLRASLPGFGSEDVLVELQDDRMLQISTESGGFVSRFKIPESGKIEELSA 120

Query: 121 FMDFGVLTVFVPK-EDDQSRRDVRVVEITGE 151
           FMDFGVLTVFVPK EDD+S RDVRVVEITGE
Sbjct: 121 FMDFGVLTVFVPKDEDDRSGRDVRVVEITGE 148

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BLAST of Carg12404 vs. TAIR10
Match: AT2G29500.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19
Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MS+IP        +N   S+I +     PF LD+W              + A    VN R
Sbjct: 1   MSMIP-----SFFNNNRRSNIFD-----PFSLDVWDPFKELTSSSLSRENSAI---VNAR 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD------------------SGG 120
           +DW ETP AHV +A LPG + E+V VE+++D +L+IS +                  SG 
Sbjct: 61  VDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQ 120

Query: 121 FVSRFKIPESGKIEELSAFMDFGVLTVFVPKEDDQSRRDVRVVEITG 150
           F  RF++PE+ K++++ A M+ GVLTV VPK + + + DV+ ++I+G
Sbjct: 121 FTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETK-KADVKSIQISG 153

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BLAST of Carg12404 vs. TAIR10
Match: AT5G59720.1 (heat shock protein 18.2)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-19
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSV--- 60
           MS+IP       I  G  S++ +     PF  DLW              + +    V   
Sbjct: 1   MSLIP------SIFGGRRSNVFD-----PFSQDLWDPFEGFFTPSSALANASTARDVAAF 60

Query: 61  -NTRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD----------------- 120
            N R+DW ETP AHV +A LPG + E+V VE++D  +LQIS +                 
Sbjct: 61  TNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVER 120

Query: 121 -SGGFVSRFKIPESGKIEELSAFMDFGVLTVFVPKEDDQSRRDVRVVEITG 150
            SG F+ RF++PE+ K+EE+ A M+ GVLTV VPK  ++ +  V+ ++I+G
Sbjct: 121 ASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEK-KPQVKSIDISG 159

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BLAST of Carg12404 vs. TAIR10
Match: AT1G59860.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-19
Identity = 60/169 (35.50%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 1   MSIIP-IGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNT 60
           MS+IP   G + RI+N       N F   PF LD+W                A     N 
Sbjct: 1   MSLIPSFFGNNRRINN-------NIFD--PFSLDVWDPFKELQFPSSSSSAIA-----NA 60

Query: 61  RLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD------------------SG 120
           R+DW ET  AHV +A LPG + E+V VE++DD +L+IS +                  SG
Sbjct: 61  RVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSG 120

Query: 121 GFVSRFKIPESGKIEELSAFMDFGVLTVFVPK-EDDQSRRDVRVVEITG 150
           GF  +F++PE+ K++++ A M+ GVLTV VPK E ++ +  V+ ++I+G
Sbjct: 121 GFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155

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BLAST of Carg12404 vs. TAIR10
Match: AT2G19310.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18
Identity = 58/163 (35.58%), Postives = 87/163 (53.37%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNG----SSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGS 60
           MS+IPI  +  R+S G        ++N F  FP P  L+                +   +
Sbjct: 1   MSMIPISNR-RRLSPGDRIWEPFELMNTFLDFPSPA-LFLSHHFPSLSREIFPQTS-SST 60

Query: 61  VNTRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIE 120
           VNT+L+WTETP AHV +A LPG   ++V+  + ++  LQI T    F+SRFK+P +   +
Sbjct: 61  VNTQLNWTETPTAHVFKAYLPGVDQDEVIAFVDEEGYLQICTGDNKFMSRFKLPNNALTD 120

Query: 121 ELSAFMDFGVLTVFVPKEDDQS---------RRDVRVVEITGE 151
           +++A+M+   L VFV K+   S          R+VRVVEITG+
Sbjct: 121 QVTAWMEDEFLVVFVEKDASSSPPQLPEIEENRNVRVVEITGD 160

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BLAST of Carg12404 vs. TAIR10
Match: AT1G07400.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-18
Identity = 58/168 (34.52%), Postives = 88/168 (52.38%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MS+IP    + R SN    SI +     PF LD+W              + +     N R
Sbjct: 1   MSLIPSFFGNNRRSN----SIFD-----PFSLDVWDPFKELQFPSSLSGETS--AITNAR 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD------------------SGG 120
           +DW ET  AHV +A LPG + E+V VE++DD +L+IS +                  SG 
Sbjct: 61  VDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQ 120

Query: 121 FVSRFKIPESGKIEELSAFMDFGVLTVFVPK-EDDQSRRDVRVVEITG 150
           F  +FK+PE+ K++++ A M+ GVLTV VPK E+ + +  V+ ++I+G
Sbjct: 121 FSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157

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BLAST of Carg12404 vs. Swiss-Prot
Match: sp|P04793|HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22
Identity = 64/169 (37.87%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 1   MSIIP--IGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVN 60
           MS+IP   GG+   + +  S  + + F  F FP  L               + AF   VN
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSL------------SAENSAF---VN 60

Query: 61  TRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD------------------S 120
           TR+DW ETP AHV  A +PG + E+V V+++DDR+LQIS +                  S
Sbjct: 61  TRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSS 120

Query: 121 GGFVSRFKIPESGKIEELSAFMDFGVLTVFVPKEDDQSRRDVRVVEITG 150
           G F+ RF++PE+ K+E++ A M+ GVLTV VPKE +  + DV+ +EI+G
Sbjct: 121 GNFMRRFRLPENAKVEQVKASMENGVLTVTVPKE-EVKKPDVKAIEISG 153

[Close]

BLAST of Carg12404 vs. Swiss-Prot
Match: sp|P05478|HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-22
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 0


Query: 1   MSIIP--IGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGS-- 60
           MS+IP   GG+   + +  S  + + F  FPFP  L               +F+   S  
Sbjct: 1   MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTL---------SSASFPEFSRENSAF 60

Query: 61  VNTRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD----------------- 120
           V+TR+DW ETP AHV +A +PG + E+V V+++DD++LQIS +                 
Sbjct: 61  VSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVER 120

Query: 121 -SGGFVSRFKIPESGKIEELSAFMDFGVLTVFVPKEDDQSRRDVRVVEITG 150
            SG F+ RF++PE+ K+E++ A M+ GVLTV VPKE +  + DV+ +EI+G
Sbjct: 121 SSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKE-EVKKPDVKAIEISG 161

[Close]

BLAST of Carg12404 vs. Swiss-Prot
Match: sp|P30693|HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus OX=4232 GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.7e-22
Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 0


Query: 29  PFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTRLDWTETPNAHVLRASLPGFQGEDVLVEL 88
           PF LD W                A    VN R+DW ETP AHVL+A LPG + E+V VE+
Sbjct: 18  PFSLDTWDPFQGIISTEPARETAAI---VNARIDWKETPEAHVLKADLPGMKKEEVKVEV 77

Query: 89  QDDRMLQISTD------------------SGGFVSRFKIPESGKIEELSAFMDFGVLTVF 148
           +D R+LQIS +                  SG F+ RF++PE+ K++E+ A M+ GVLTV 
Sbjct: 78  EDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVV 137

Query: 149 VPKEDDQSRRDVRVVEITG 150
           VPKE+++ +  V+ ++I+G
Sbjct: 138 VPKEEEEKKPMVKAIDISG 153

[Close]

BLAST of Carg12404 vs. Swiss-Prot
Match: sp|P02519|HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-21
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 1   MSIIP--IGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVN 60
           MS+IP   GG+   + +  S  + + F  FPFP  L               + AF   V+
Sbjct: 1   MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSL------------SAENSAF---VS 60

Query: 61  TRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD------------------S 120
           TR+DW ETP AHV +A +PG + E+V +E+QD R+LQIS +                  S
Sbjct: 61  TRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSS 120

Query: 121 GGFVSRFKIPESGKIEELSAFMDFGVLTVFVPKEDDQSRRDVRVVEITG 150
           G  V RF++PE+ K++++ A M+ GVLTV VPKE+ + + DV+ ++I+G
Sbjct: 121 GKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIK-KPDVKAIDISG 153

[Close]

BLAST of Carg12404 vs. Swiss-Prot
Match: sp|P04795|HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.7e-21
Identity = 63/169 (37.28%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLW--XXXXXXXXXXXXXXDFAFGGSVN 60
           MS+IP       I  G  S++ +     PF LD+W                + AF   VN
Sbjct: 1   MSLIP------SIFGGPRSNVFD-----PFSLDMWDPFKDFHVPTSSVSAENSAF---VN 60

Query: 61  TRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTD------------------S 120
           TR+DW ET  AHVL+A +PG + E+V V+++DDR+LQIS +                  S
Sbjct: 61  TRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSS 120

Query: 121 GGFVSRFKIPESGKIEELSAFMDFGVLTVFVPKEDDQSRRDVRVVEITG 150
           G F+ RF++PE+ K+E++ A M+ GVLTV +PKE +  + DV+ +EI+G
Sbjct: 121 GKFMRRFRLPENAKVEQVKACMENGVLTVTIPKE-EVKKSDVKPIEISG 154

[Close]

BLAST of Carg12404 vs. TrEMBL
Match: tr|H6TB38|H6TB38_CITLA (HSP16.5 OS=Citrullus lanatus OX=3654 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-45
Identity = 117/151 (77.48%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPIGGQDGRISN S S+ILNRFP FPFPLDL   XXXXXXXXXXXX           
Sbjct: 1   MSIIPIGGQDGRISNTSPSNILNRFPNFPFPLDL---XXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
                     VLRASLPGF GEDVLVELQDDRMLQIST+SGGFVSRFKIPE+GKIEELSA
Sbjct: 61  XXXXXXXXXXVLRASLPGFGGEDVLVELQDDRMLQISTESGGFVSRFKIPETGKIEELSA 120

Query: 121 FMDFGVLTVFVPKE-DDQSRRDVRVVEITGE 151
           FMDFG+LTVFVPKE DD+SRRDVRVVEITGE
Sbjct: 121 FMDFGILTVFVPKEDDDRSRRDVRVVEITGE 148

[Close]

BLAST of Carg12404 vs. TrEMBL
Match: tr|A0A0A0LXH9|A0A0A0LXH9_CUCSA (Low molecular weight heat-shock protein OS=Cucumis sativus OX=3659 GN=Csa_1G527860 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 111/151 (73.51%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPI GQDGRISN   S+ LNRFP FPFPLDLW    XXXXXXXXXX           
Sbjct: 1   MSIIPITGQDGRISNPFPSNSLNRFPNFPFPLDLW---HXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
                      LRASLPGF  EDVLVELQDDRMLQIST+SGGF+SRFKIPESGKIEELSA
Sbjct: 61  XXXXXXXXXXXLRASLPGFGSEDVLVELQDDRMLQISTESGGFLSRFKIPESGKIEELSA 120

Query: 121 FMDFGVLTVFVPK-EDDQSRRDVRVVEITGE 151
           FMDFGVLTVFVPK EDD+S RDVRVVEITGE
Sbjct: 121 FMDFGVLTVFVPKEEDDRSGRDVRVVEITGE 148

[Close]

BLAST of Carg12404 vs. TrEMBL
Match: tr|A0A1S3C660|A0A1S3C660_CUCME (17.5 kDa class I heat shock protein-like OS=Cucumis melo OX=3656 GN=LOC103497114 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.7e-42
Identity = 115/151 (76.16%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNTR 60
           MSIIPI GQDGR+SN S S+ILNRFP FPFPL   XXXXXXXXXXXXXX           
Sbjct: 1   MSIIPITGQDGRVSNPSPSNILNRFPNFPFPL---XXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELSA 120
                     VLRASLPGF  EDVLVELQDDRMLQIST+SGGFVSRFKIPESGKIEELSA
Sbjct: 61  XXXXXXXXXXVLRASLPGFGSEDVLVELQDDRMLQISTESGGFVSRFKIPESGKIEELSA 120

Query: 121 FMDFGVLTVFVPK-EDDQSRRDVRVVEITGE 151
           FMDFGVLTVFVPK EDD+S RDVRVVEITGE
Sbjct: 121 FMDFGVLTVFVPKDEDDRSGRDVRVVEITGE 148

[Close]

BLAST of Carg12404 vs. TrEMBL
Match: tr|W9QLJ6|W9QLJ6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006028 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 84/152 (55.26%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 1   MSIIPIGGQDGRIS--NGSSSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVN 60
           MSIIPI   D RI   +  S  + + FP FPFP                  DF  G SVN
Sbjct: 1   MSIIPINNSDRRIDLFDPFSLDLWDPFPDFPFPF---------PSLSRAFPDFNLGASVN 60

Query: 61  TRLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEEL 120
           +R+DW ET  A+VLRA+ P   GEDVLVELQDDR+LQISTDSG F+SRFK+P++ +I++L
Sbjct: 61  SRVDWKETAYAYVLRATFP---GEDVLVELQDDRVLQISTDSGSFMSRFKLPDNARIDQL 120

Query: 121 SAFMDFGVLTVFVPKEDDQSRRDVRVVEITGE 151
            AFM+ GVLTV VPKE   SR +VRVVEITGE
Sbjct: 121 KAFMNNGVLTVTVPKE-GASRSNVRVVEITGE 139

[Close]

BLAST of Carg12404 vs. TrEMBL
Match: tr|M5WKH1|M5WKH1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G008800 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.9e-31
Identity = 76/151 (50.33%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1   MSIIPIGGQDGRISNGS-SSSILNRFPKFPFPLDLWXXXXXXXXXXXXXXDFAFGGSVNT 60
           MSI+PI  Q G   + S +  + + F  FPFP                  +F  G SVN+
Sbjct: 1   MSIVPINEQRGSDFDPSLALDLWDPFTDFPFPF--------PSSLSNVFREFNLGSSVNS 60

Query: 61  RLDWTETPNAHVLRASLPGFQGEDVLVELQDDRMLQISTDSGGFVSRFKIPESGKIEELS 120
           RLDW ET +AH+L+A+LP F  EDVLVELQD+R+LQISTDSG F+++FK+P++ KIE+L 
Sbjct: 61  RLDWRETRHAHILKAALPAFMNEDVLVELQDERVLQISTDSGSFMTKFKLPDNAKIEQLK 120

Query: 121 AFMDFGVLTVFVPKEDDQSRRDVRVVEITGE 151
           AFM  GVLTV VPKE + SR ++R +EI+GE
Sbjct: 121 AFMSNGVLTVTVPKE-EPSRPNIRAIEISGE 142

The following BLAST results are available for this feature:

BLAST of Carg12404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949250.1	3.3e-70	100.00	18.5 kDa class I heat shock protein-like [Cucurbita moschata] >XP_022998185.1 18...	[more]
XP_023524947.1	5.3e-68	96.67	18.5 kDa class I heat shock protein-like [Cucurbita pepo subsp. pepo]	[more]
ADU55785.1	2.8e-45	77.48	HSP16.5 [Citrullus lanatus]	[more]
XP_004153731.1	2.2e-42	73.51	PREDICTED: 17.5 kDa class I heat shock protein-like [Cucumis sativus] >KGN65769....	[more]
XP_008457423.1	8.5e-42	76.16	PREDICTED: 17.5 kDa class I heat shock protein-like [Cucumis melo]	[more]

BLAST of Carg12404 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29500.1	1.9e-19	34.73	HSP20-like chaperones superfamily protein	[more]
AT5G59720.1	4.2e-19	34.50	heat shock protein 18.2	[more]
AT1G59860.1	7.2e-19	35.50	HSP20-like chaperones superfamily protein	[more]
AT2G19310.1	1.2e-18	35.58	HSP20-like chaperones superfamily protein	[more]
AT1G07400.1	3.6e-18	34.52	HSP20-like chaperones superfamily protein	[more]

BLAST of Carg12404 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P04793\|HSP13_SOYBN	2.3e-22	37.87	17.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.5-M PE=3 SV=...	[more]
sp\|P05478\|HSP16_SOYBN	3.9e-22	36.84	18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=...	[more]
sp\|P30693\|HSP11_HELAN	8.7e-22	39.57	17.6 kDa class I heat shock protein OS=Helianthus annuus OX=4232 GN=HSP17.6 PE=2...	[more]
sp\|P02519\|HSP11_SOYBN	5.7e-21	36.69	17.3 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.3-B PE=3 SV=...	[more]
sp\|P04795\|HSP15_SOYBN	9.7e-21	37.28	17.6 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.6-L PE=3 SV=...	[more]

BLAST of Carg12404 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|H6TB38\|H6TB38_CITLA	1.9e-45	77.48	HSP16.5 OS=Citrullus lanatus OX=3654 PE=2 SV=1	[more]
tr\|A0A0A0LXH9\|A0A0A0LXH9_CUCSA	1.5e-42	73.51	Low molecular weight heat-shock protein OS=Cucumis sativus OX=3659 GN=Csa_1G5278...	[more]
tr\|A0A1S3C660\|A0A1S3C660_CUCME	5.7e-42	76.16	17.5 kDa class I heat shock protein-like OS=Cucumis melo OX=3656 GN=LOC103497114...	[more]
tr\|W9QLJ6\|W9QLJ6_9ROSA	6.9e-32	55.26	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006028 PE=3 SV=1	[more]
tr\|M5WKH1\|M5WKH1_PRUPE	5.9e-31	50.33	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G008800 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR031107	HSP20
IPR008978	HSP20-like_chaperone
IPR002068	A-crystallin/Hsp20_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12404-RA	Carg12404-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 62..147 e-value: 1.5E-7 score: 31.4
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 52..150 score: 14.173
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 28..147 e-value: 7.1E-15 score: 56.9
IPR008978	HSP20-like chaperone	SUPERFAMILY	SSF49764	HSP20-like chaperones	coord: 27..144
None	No IPR available	PANTHER	PTHR11527:SF174	SUBFAMILY NOT NAMED	coord: 30..148
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	SMALL HEAT-SHOCK PROTEIN HSP20 FAMILY	coord: 30..148

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12404	Cla008197	Watermelon (97103) v1	carwmB0440
Carg12404	Cla003964	Watermelon (97103) v1	carwmB0441
Carg12404	Csa1G527860	Cucumber (Chinese Long) v2	carcuB0471
Carg12404	MELO3C020587	Melon (DHL92) v3.5.1	carmeB0449
Carg12404	ClCG03G001100	Watermelon (Charleston Gray)	carwcgB0436
Carg12404	CSPI01G23520	Wild cucumber (PI 183967)	carcpiB0476
Carg12404	Cucsa.146690	Cucumber (Gy14) v1	carcgyB0509
Carg12404	CmaCh01G006350	Cucurbita maxima (Rimu)	carcmaB0613
Carg12404	CmaCh13G000950	Cucurbita maxima (Rimu)	carcmaB0610
Carg12404	CmoCh13G000910	Cucurbita moschata (Rifu)	carcmoB0594
Carg12404	CmoCh01G006670	Cucurbita moschata (Rifu)	carcmoB0596
Carg12404	Lsi02G013180	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12404	Lsi04G009450	Bottle gourd (USVL1VR-Ls)	carlsiB405
Carg12404	Cp4.1LG20g08260	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12404	Cp4.1LG01g11230	Cucurbita pepo (Zucchini)	carcpeB0619
Carg12404	Cp4.1LG02g11550	Cucurbita pepo (Zucchini)	carcpeB0623
Carg12404	CsGy1G022990	Cucumber (Gy14) v2	carcgybB0448
Carg12404	CsGy5G007630	Cucumber (Gy14) v2	carcgybB0452
Carg12404	MELO3C035274.2	Melon (DHL92) v3.6.1	carmedB0451
Carg12404	CsaV3_1G035810	Cucumber (Chinese Long) v3	carcucB0472
Carg12404	Cla97C03G051930	Watermelon (97103) v2	carwmbB0467
Carg12404	Bhi08G000468	Wax gourd	carwgoB0535

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12404	Carg01075	Silver-seed gourd	carcarB192
Carg12404	Carg12510	Silver-seed gourd	carcarB449

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12404	Silver-seed gourd	carcarB408
Carg12404	Cucumber (Gy14) v2	carcgybB0450
Carg12404	Cucumber (Gy14) v1	carcgyB0510
Carg12404	Cucurbita maxima (Rimu)	carcmaB0612
Carg12404	Cucurbita moschata (Rifu)	carcmoB0595
Carg12404	Wild cucumber (PI 183967)	carcpiB0478
Carg12404	Cucumber (Chinese Long) v2	carcuB0473
Carg12404	Cucumber (Chinese Long) v3	carcucB0475
Carg12404	Melon (DHL92) v3.5.1	carmeB0450
Carg12404	Melon (DHL92) v3.6.1	carmedB0453
Carg12404	Watermelon (Charleston Gray)	carwcgB0431
Carg12404	Watermelon (97103) v1	carwmB0438
Carg12404	Watermelon (97103) v2	carwmbB0463
Carg12404	Wax gourd	carwgoB0534