Carg12339 (gene) Silver-seed gourd

Overview
NameCarg12339
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger protein ZAT12-like
LocationCucurbita_argyrosperma_scaffold_074 : 396910 .. 397317 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGATTGCTTAATGTTGCTATCCAAAATGGAGGAGCCACGGCGGAAGAACGGTTTCGCTCCGACGCCGGCGGCGGATTCCGACAAGATTTTTGTCTGTAAAACGTGTAATAGAGAATTCTCATCTTTCCAGGCTTTAGGAGGGCATAGAACCAGCCACACGAAGCCCAATTTCAACGCTAACGGCCCACCAACTAAGTCCAAGGCCCATGAATGCCCAATTTGTGGGCTTGATTTTCCGATCGGACAAGCGTTAGGCGGTCACATGAGGCGCCACCGGAACACCGCCGCCGCCGCCGCCGTATTGAAGAAGTCCGATGGCTGTGGGAAAAGGGTTTTTGAGTTGGATTTGAACTTGCCGCCATTAGAGAACAATTTGAATTTGAAGTTGCAACTGAGTTTATAG

mRNA sequence

ATGGTAGATTGCTTAATGTTGCTATCCAAAATGGAGGAGCCACGGCGGAAGAACGGTTTCGCTCCGACGCCGGCGGCGGATTCCGACAAGATTTTTGTCTGTAAAACGTGTAATAGAGAATTCTCATCTTTCCAGGCTTTAGGAGGGCATAGAACCAGCCACACGAAGCCCAATTTCAACGCTAACGGCCCACCAACTAAGTCCAAGGCCCATGAATGCCCAATTTGTGGGCTTGATTTTCCGATCGGACAAGCGTTAGGCGGTCACATGAGGCGCCACCGGAACACCGCCGCCGCCGCCGCCGTATTGAAGAAGTCCGATGGCTGTGGGAAAAGGGTTTTTGAGTTGGATTTGAACTTGCCGCCATTAGAGAACAATTTGAATTTGAAGTTGCAACTGAGTTTATAG

Coding sequence (CDS)

ATGGTAGATTGCTTAATGTTGCTATCCAAAATGGAGGAGCCACGGCGGAAGAACGGTTTCGCTCCGACGCCGGCGGCGGATTCCGACAAGATTTTTGTCTGTAAAACGTGTAATAGAGAATTCTCATCTTTCCAGGCTTTAGGAGGGCATAGAACCAGCCACACGAAGCCCAATTTCAACGCTAACGGCCCACCAACTAAGTCCAAGGCCCATGAATGCCCAATTTGTGGGCTTGATTTTCCGATCGGACAAGCGTTAGGCGGTCACATGAGGCGCCACCGGAACACCGCCGCCGCCGCCGCCGTATTGAAGAAGTCCGATGGCTGTGGGAAAAGGGTTTTTGAGTTGGATTTGAACTTGCCGCCATTAGAGAACAATTTGAATTTGAAGTTGCAACTGAGTTTATAG

Protein sequence

MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFNANGPPTKSKAHECPICGLDFPIGQALGGHMRRHRNTAAAAAVLKKSDGCGKRVFELDLNLPPLENNLNLKLQLSL
Homology
[Close]
BLAST of Carg12339 vs. NCBI nr
Match: XP_022949001.1 (zinc finger protein ZAT12-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 8.5e-49
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFN 60
           MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFN
Sbjct: 15  MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFN 74

Query: 61  ANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLKKSDGCGKRVFELDLNL 120
           ANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNT AAAAVLKKSDGCGKRVFELDLNL
Sbjct: 75  ANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNT-AAAAVLKKSDGCGKRVFELDLNL 134

Query: 121 PPLENNLNLKLQLSL 136
           PPLENNLNLKLQLSL
Sbjct: 135 PPLENNLNLKLQLSL 148

[Close]
BLAST of Carg12339 vs. NCBI nr
Match: XP_022997819.1 (zinc finger protein ZAT12-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 197.2 bits (500), Expect = 3.6e-47
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFN 60
           MVDCLMLLSKMEEPRRKNGFAPTPAADSDK+FVCKTCNREFSSFQALGGHRTSHTKPNFN
Sbjct: 15  MVDCLMLLSKMEEPRRKNGFAPTPAADSDKVFVCKTCNREFSSFQALGGHRTSHTKPNFN 74

Query: 61  ANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLKKSDGCGKRVFELDLNL 120
           ANGP XXXXXXXXXXXXXXXXXXXXXXXXXXXXX+T AAAAVLKKSDGCGKRVFELDLNL
Sbjct: 75  ANGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDT-AAAAVLKKSDGCGKRVFELDLNL 134

Query: 121 PPLENNLNLKLQLSL 136
           PPLENNLNLKLQLSL
Sbjct: 135 PPLENNLNLKLQLSL 148

[Close]
BLAST of Carg12339 vs. NCBI nr
Match: XP_023524575.1 (zinc finger protein ZAT12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 121/151 (80.13%), Postives = 124/151 (82.12%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRK----------------NGFAPTPAADSDKIFVCKTCNREFSSF 60
           MVDCLMLLS+MEEPRRK                  F+PTPAADSDKIFVCKTCNREFSSF
Sbjct: 15  MVDCLMLLSRMEEPRRKXXXXXXXXXXXXXXXXXXFSPTPAADSDKIFVCKTCNREFSSF 74

Query: 61  QALGGHRTSHTKPNFNANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLK 120
           QALGGHRTSHTK         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLK
Sbjct: 75  QALGGHRTSHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLK 134

Query: 121 KSDGCGKRVFELDLNLPPLENNLNLKLQLSL 136
           KSDGCGKR+FELDLNLPPLENNLNLKLQLSL
Sbjct: 135 KSDGCGKRIFELDLNLPPLENNLNLKLQLSL 165

[Close]
BLAST of Carg12339 vs. NCBI nr
Match: XP_008457541.1 (PREDICTED: zinc finger protein ZAT12-like [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25
Identity = 103/133 (77.44%), Postives = 110/133 (82.71%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNF- 60
           MVDC   LSK+EEP RKN     PAADS K+FVCKTCNREFSSFQALGGHR SH KPNF 
Sbjct: 24  MVDC---LSKVEEPWRKN---TAPAADSGKVFVCKTCNREFSSFQALGGHRASHKKPNFK 83

Query: 61  NANGPP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLKKSDGCGKRVFELDL 120
           +ANGPP  XXXXXXXXXXXXXXXXXXXXXXXXXXXX+T  AAAVL+KSDG  KR F LDL
Sbjct: 84  DANGPPTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTTAAAVLEKSDGGEKRGFGLDL 143

Query: 121 NLPPLENNLNLKL 132
           NL P+ENNL L+L
Sbjct: 144 NLTPIENNLKLQL 150

[Close]
BLAST of Carg12339 vs. NCBI nr
Match: XP_022949002.1 (zinc finger protein ZAT12-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 60/90 (66.67%), Postives = 60/90 (66.67%), Query Frame = 0 

Query: 46  ALGGHRTSHTKPNFNANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLKK 105
           ALGGHRTSHTKPNFNANGPP                             NT AAAAVLKK
Sbjct: 16  ALGGHRTSHTKPNFNANGPPTKSKAHECPICGLDFPIGQALGGHMRRHRNT-AAAAVLKK 75

Query: 106 SDGCGKRVFELDLNLPPLENNLNLKLQLSL 136
           SDGCGKRVFELDLNLPPLENNLNLKLQLSL
Sbjct: 76  SDGCGKRVFELDLNLPPLENNLNLKLQLSL 104

[Close]
BLAST of Carg12339 vs. TAIR10
Match: AT2G28710.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 64.3 bits (155), Expect = 6.5e-11
Identity = 78/150 (52.00%), Postives = 90/150 (60.00%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTK-PNF 60
           M +CL+LLSK  +   K+           ++F CKTCN+EF SFQALGGHR SH +    
Sbjct: 14  MANCLILLSKAHQNDTKS-----------RVFACKTCNKEFPSFQALGGHRASHRRSAAL 73

Query: 61  NANGPP----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVL 120
             + PP                XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   A   + 
Sbjct: 74  EGHAPPSPKRVKPVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVTMK 133

Query: 121 KKSDGCGKRVFELDLNLPPLENNLNLKLQL 134
           K   G GKRV  LDLNL PLEN  +LKL+L
Sbjct: 134 KSGGGNGKRVLCLDLNLTPLENE-DLKLEL 151

[Close]
BLAST of Carg12339 vs. TAIR10
Match: AT5G59820.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-10
Identity = 73/149 (48.99%), Postives = 88/149 (59.06%), Query Frame = 0 

Query: 3   DCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFNA- 62
           +CLMLLS++ +     G       D  ++F CKTC ++F SFQALGGHR SH KPN +A 
Sbjct: 17  NCLMLLSRVGQENVDGG-------DQKRVFTCKTCLKQFHSFQALGGHRASHKKPNNDAL 76

Query: 63  ----------NGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLK------- 122
                     +  PXXXXXXXXXXXXXXXXXXXXXXXXX          A+L        
Sbjct: 77  SSGLMKKVKTSSHPXXXXXXXXXXXXXXXXXXXXXXXXXGAAGGALVTRALLPEPTVTTL 136

Query: 123 KSDGCGKRVFELDLNLPPLENNLNLKLQL 134
           K    GKRV  LDL+L  + +NLNLKL+L
Sbjct: 137 KKSSSGKRVACLDLSL-GMVDNLNLKLEL 157

[Close]
BLAST of Carg12339 vs. TAIR10
Match: AT2G37430.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 63/143 (44.06%), Postives = 77/143 (53.85%), Query Frame = 0 

Query: 4   CLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKP------ 63
           CLM+L++    ++      T +  S++ F CKTCN+ FSSFQALGGHR SH KP      
Sbjct: 20  CLMILAQTSMVKQIGLNQHTESHTSNQ-FECKTCNKRFSSFQALGGHRASHKKPKLTVEQ 79

Query: 64  -------------NFNANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLK 123
                        +F      XXXXXXXXXXXXXXXXXXX              +  VLK
Sbjct: 80  KDVKHLSNDYKGNHFXXXXXXXXXXXXXXXXXXXXXXXXXSMTVEPSFISPMIPSMPVLK 139

Query: 124 KSDGCGKRVFELDLNLPPLENNL 128
           +  G  KR+  LDLNL PLEN+L
Sbjct: 140 RC-GSSKRILSLDLNLTPLENDL 160

[Close]
BLAST of Carg12339 vs. TAIR10
Match: AT2G28200.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-08
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 1   MVDCLMLLSK---MEEPRRKNGFAPTPAADSDK----IFVCKTCNREFSSFQALGGHRTS 58
           M  CL++L++   +  P  KN         S+     ++ CKTCNR FSSFQALGGHR S
Sbjct: 77  MAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRAS 136

[Close]
BLAST of Carg12339 vs. TAIR10
Match: AT3G46090.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-08
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 4  CLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTK 57
          CLMLLS++       G         +++F CKTC +EFSSFQALGGHR SH K
Sbjct: 19 CLMLLSRV-------GECGGGCGGDERVFRCKTCLKEFSSFQALGGHRASHKK 64

[Close]
BLAST of Carg12339 vs. Swiss-Prot
Match: sp|Q42410|ZAT12_ARATH (Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09
Identity = 73/149 (48.99%), Postives = 88/149 (59.06%), Query Frame = 0 

Query: 3   DCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFNA- 62
           +CLMLLS++ +     G       D  ++F CKTC ++F SFQALGGHR SH KPN +A 
Sbjct: 17  NCLMLLSRVGQENVDGG-------DQKRVFTCKTCLKQFHSFQALGGHRASHKKPNNDAL 76

Query: 63  ----------NGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLK------- 122
                     +  PXXXXXXXXXXXXXXXXXXXXXXXXX          A+L        
Sbjct: 77  SSGLMKKVKTSSHPXXXXXXXXXXXXXXXXXXXXXXXXXGAAGGALVTRALLPEPTVTTL 136

Query: 123 KSDGCGKRVFELDLNLPPLENNLNLKLQL 134
           K    GKRV  LDL+L  + +NLNLKL+L
Sbjct: 137 KKSSSGKRVACLDLSL-GMVDNLNLKLEL 157

[Close]
BLAST of Carg12339 vs. Swiss-Prot
Match: sp|Q9SLD4|ZAT11_ARATH (Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 63/143 (44.06%), Postives = 77/143 (53.85%), Query Frame = 0 

Query: 4   CLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKP------ 63
           CLM+L++    ++      T +  S++ F CKTCN+ FSSFQALGGHR SH KP      
Sbjct: 20  CLMILAQTSMVKQIGLNQHTESHTSNQ-FECKTCNKRFSSFQALGGHRASHKKPKLTVEQ 79

Query: 64  -------------NFNANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLK 123
                        +F      XXXXXXXXXXXXXXXXXXX              +  VLK
Sbjct: 80  KDVKHLSNDYKGNHFXXXXXXXXXXXXXXXXXXXXXXXXXSMTVEPSFISPMIPSMPVLK 139

Query: 124 KSDGCGKRVFELDLNLPPLENNL 128
           +  G  KR+  LDLNL PLEN+L
Sbjct: 140 RC-GSSKRILSLDLNLTPLENDL 160

[Close]
BLAST of Carg12339 vs. Swiss-Prot
Match: sp|Q681X4|ZAT5_ARATH (Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-07
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 1   MVDCLMLLSK---MEEPRRKNGFAPTPAADSDK----IFVCKTCNREFSSFQALGGHRTS 58
           M  CL++L++   +  P  KN         S+     ++ CKTCNR FSSFQALGGHR S
Sbjct: 77  MAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRAS 136

[Close]
BLAST of Carg12339 vs. Swiss-Prot
Match: sp|Q42453|ZAT7_ARATH (Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.3e-07
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 4  CLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTK 57
          CLMLLS++       G         +++F CKTC +EFSSFQALGGHR SH K
Sbjct: 19 CLMLLSRV-------GECGGGCGGDERVFRCKTCLKEFSSFQALGGHRASHKK 64

[Close]
BLAST of Carg12339 vs. Swiss-Prot
Match: sp|Q9LX85|ZAT8_ARATH (Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-06
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 4  CLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTK 57
          CLMLLS++ E                ++F CKTC +EFSSFQALGGHR SH K
Sbjct: 18 CLMLLSRVGE---------CGGGGEKRVFRCKTCLKEFSSFQALGGHRASHKK 61

[Close]
BLAST of Carg12339 vs. TrEMBL
Match: tr|A0A1S3C722|A0A1S3C722_CUCME (zinc finger protein ZAT12-like OS=Cucumis melo OX=3656 GN=LOC103497207 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 103/133 (77.44%), Postives = 110/133 (82.71%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNF- 60
           MVDC   LSK+EEP RKN     PAADS K+FVCKTCNREFSSFQALGGHR SH KPNF 
Sbjct: 24  MVDC---LSKVEEPWRKN---TAPAADSGKVFVCKTCNREFSSFQALGGHRASHKKPNFK 83

Query: 61  NANGPP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLKKSDGCGKRVFELDL 120
           +ANGPP  XXXXXXXXXXXXXXXXXXXXXXXXXXXX+T  AAAVL+KSDG  KR F LDL
Sbjct: 84  DANGPPTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTTAAAVLEKSDGGEKRGFGLDL 143

Query: 121 NLPPLENNLNLKL 132
           NL P+ENNL L+L
Sbjct: 144 NLTPIENNLKLQL 150

[Close]
BLAST of Carg12339 vs. TrEMBL
Match: tr|A0A0A0LUQ6|A0A0A0LUQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G481720 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 90/131 (68.70%), Postives = 98/131 (74.81%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFN 60
           MVDC   +SK+EEP R N     PA DS K+FVCKTCNREFSSFQALGGHR SH KPN  
Sbjct: 25  MVDC---MSKVEEPWRNNS---APAGDSGKVFVCKTCNREFSSFQALGGHRASHKKPN-- 84

Query: 61  ANGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLKKSDGCGKRVFELDLNL 120
            +  P XXXXXXXXXXXXXXXXXXXXXXXXXXXX       V++KSD  GKR F LDLNL
Sbjct: 85  -SKDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTVVVEKSDAGGKRGFGLDLNL 144

Query: 121 PPLENNLNLKL 132
            P+ENNL L+L
Sbjct: 145 TPIENNLKLQL 146

[Close]
BLAST of Carg12339 vs. TrEMBL
Match: tr|A0A2P6QIB1|A0A2P6QIB1_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0062951 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-10
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 1  MVDCLMLLSKMEEPRRKNGFAPT-PAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNF 60
          +V CLMLLSK+ +    N  +P      SD+ FVCKTCNREFSSFQALGGHR SH KP  
Sbjct: 13 LVSCLMLLSKVGQ----NDSSPVKKQKTSDRAFVCKTCNREFSSFQALGGHRASHNKPKL 72

Query: 61 NANG 64
           A G
Sbjct: 73 MAGG 72

[Close]
BLAST of Carg12339 vs. TrEMBL
Match: tr|M5W0F3|M5W0F3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G084100 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.1e-10
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 1  MVDCLMLLSKMEEPRRKNGFAPTPAAD--SDKIFVCKTCNREFSSFQALGGHRTSHTKPN 60
          +V+CLMLLSK+++P      +PT A D    ++F CKTCNREF SFQALGGHR SH KP 
Sbjct: 15 LVNCLMLLSKIDQP----DSSPTKAEDLKRGRVFTCKTCNREFPSFQALGGHRASHKKPK 74

Query: 61 FNANG 64
              G
Sbjct: 75 LMPGG 75

[Close]
BLAST of Carg12339 vs. TrEMBL
Match: tr|B2CZY8|B2CZY8_CAMSI (Putative cold-inducible protein OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.1e-10
Identity = 74/146 (50.68%), Postives = 83/146 (56.85%), Query Frame = 0 

Query: 1   MVDCLMLLSKMEEPRRKNGFAPTPAADSDKIFVCKTCNREFSSFQALGGHRTSHTKPNFN 60
           M +CLMLLS++ E     G         D++F CKTCNREFSSFQALGGHR SH K    
Sbjct: 20  MANCLMLLSRVGETTSTKG--------RDRVFTCKTCNREFSSFQALGGHRASHKKLRLM 79

Query: 61  ANG--------------PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAAAAVLKKS 120
             G                XXXXXXXXXXXXXXXXXXXXXXX         A   VLKKS
Sbjct: 80  GGGDLHVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSSPSTAQAVIPVLKKS 139

Query: 121 DGC--GKRVFELDLNLPPLENNLNLK 131
           +     KRV  LDLNL P EN++ +K
Sbjct: 140 NSSNGSKRVLSLDLNLTPYENHMKIK 157

The following BLAST results are available for this feature:
BLAST of Carg12339 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949001.18.5e-4999.26zinc finger protein ZAT12-like isoform X1 [Cucurbita moschata][more]
XP_022997819.13.6e-4797.04zinc finger protein ZAT12-like isoform X1 [Cucurbita maxima][more]
XP_023524575.11.1e-3780.13zinc finger protein ZAT12-like [Cucurbita pepo subsp. pepo][more]
XP_008457541.12.2e-2577.44PREDICTED: zinc finger protein ZAT12-like [Cucumis melo][more]
XP_022949002.11.7e-2066.67zinc finger protein ZAT12-like isoform X2 [Cucurbita moschata][more]
BLAST of Carg12339 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28710.16.5e-1152.00C2H2-type zinc finger family protein[more]
AT5G59820.14.2e-1048.99C2H2-type zinc finger family protein[more]
AT2G37430.11.4e-0844.06C2H2 and C2HC zinc fingers superfamily protein[more]
AT2G28200.13.0e-0845.31C2H2-type zinc finger family protein[more]
AT3G46090.15.2e-0850.94C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of Carg12339 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q42410|ZAT12_ARATH7.6e-0948.99Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1[more]
sp|Q9SLD4|ZAT11_ARATH2.5e-0744.06Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1[more]
sp|Q681X4|ZAT5_ARATH5.5e-0745.31Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1[more]
sp|Q42453|ZAT7_ARATH9.3e-0750.94Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1[more]
sp|Q9LX85|ZAT8_ARATH2.1e-0650.94Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1[more]
BLAST of Carg12339 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C722|A0A1S3C722_CUCME1.5e-2577.44zinc finger protein ZAT12-like OS=Cucumis melo OX=3656 GN=LOC103497207 PE=4 SV=1[more]
tr|A0A0A0LUQ6|A0A0A0LUQ6_CUCSA2.7e-1968.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G481720 PE=4 SV=1[more]
tr|A0A2P6QIB1|A0A2P6QIB1_ROSCH3.9e-1059.38Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm... [more]
tr|M5W0F3|M5W0F3_PRUPE5.1e-1055.38Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G084100 PE=4 SV=1[more]
tr|B2CZY8|B2CZY8_CAMSI5.1e-1050.68Putative cold-inducible protein OS=Camellia sinensis OX=4442 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2_type
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12339-RACarg12339-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 71..93
e-value: 0.33
score: 20.0
coord: 32..54
e-value: 0.28
score: 20.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 73..93
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 34..54
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 71..98
score: 8.829
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 32..59
score: 10.118
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 70..94
e-value: 1.6E-9
score: 37.4
coord: 32..56
e-value: 5.6E-11
score: 42.0
NoneNo IPR availableGENE3DG3DSA:3.30.160.60coord: 9..98
e-value: 8.1E-11
score: 43.8
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 66..126
coord: 1..61
NoneNo IPR availablePANTHERPTHR26374:SF318C2H2-TYPE ZINC FINGER PROTEIN-RELATEDcoord: 66..126
coord: 1..61
IPR036236Zinc finger C2H2 superfamilySUPERFAMILYSSF57667beta-beta-alpha zinc fingerscoord: 30..93

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12339Cla013282Watermelon (97103) v1carwmB0442
Carg12339Cla008281Watermelon (97103) v1carwmB0440
Carg12339Csa1G481720Cucumber (Chinese Long) v2carcuB0471
Carg12339Csa6G303740Cucumber (Chinese Long) v2carcuB0476
Carg12339MELO3C020703Melon (DHL92) v3.5.1carmeB0449
Carg12339MELO3C013679Melon (DHL92) v3.5.1carmeB0448
Carg12339ClCG03G001900Watermelon (Charleston Gray)carwcgB0436
Carg12339ClCG02G020420Watermelon (Charleston Gray)carwcgB0433
Carg12339CSPI01G22480Wild cucumber (PI 183967)carcpiB0476
Carg12339Cucsa.213470Cucumber (Gy14) v1carcgyB0512
Carg12339CmaCh02G008270Cucurbita maxima (Rimu)carcmaB0616
Carg12339CmaCh01G005670Cucurbita maxima (Rimu)carcmaB0613
Carg12339CmaCh20G004270Cucurbita maxima (Rimu)carcmaB0614
Carg12339CmoCh02G008320Cucurbita moschata (Rifu)carcmoB0599
Carg12339CmoCh01G005940Cucurbita moschata (Rifu)carcmoB0596
Carg12339CmoCh20G004640Cucurbita moschata (Rifu)carcmoB0597
Carg12339Lsi10G013480Bottle gourd (USVL1VR-Ls)carlsiB401
Carg12339Lsi02G013930Bottle gourd (USVL1VR-Ls)carlsiB403
Carg12339Cp4.1LG16g05900Cucurbita pepo (Zucchini)carcpeB0618
Carg12339Cp4.1LG05g08890Cucurbita pepo (Zucchini)carcpeB0625
Carg12339Cp4.1LG02g13240Cucurbita pepo (Zucchini)carcpeB0622
Carg12339CsGy1G022060Cucumber (Gy14) v2carcgybB0448
Carg12339CsGy6G016320Cucumber (Gy14) v2carcgybB0454
Carg12339MELO3C013679.2Melon (DHL92) v3.6.1carmedB0450
Carg12339MELO3C020703.2Melon (DHL92) v3.6.1carmedB0451
Carg12339CsaV3_1G033660Cucumber (Chinese Long) v3carcucB0472
Carg12339CsaV3_6G022190Cucumber (Chinese Long) v3carcucB0478
Carg12339Cla97C02G046380Watermelon (97103) v2carwmbB0464
Carg12339Cla97C03G052910Watermelon (97103) v2carwmbB0467
Carg12339Bhi10G000538Wax gourdcarwgoB0530
Carg12339Bhi08G000333Wax gourdcarwgoB0533
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12339Carg20275Silver-seed gourdcarcarB333
Carg12339Carg03295Silver-seed gourdcarcarB354
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12339Cucurbita maxima (Rimu)carcmaB0610
Carg12339Cucurbita maxima (Rimu)carcmaB0615
Carg12339Cucurbita moschata (Rifu)carcmoB0594
Carg12339Cucurbita moschata (Rifu)carcmoB0598
Carg12339Cucurbita pepo (Zucchini)carcpeB0617
Carg12339Cucurbita pepo (Zucchini)carcpeB0620
Carg12339Cucurbita pepo (Zucchini)carcpeB0624
Carg12339Wild cucumber (PI 183967)carcpiB0480
Carg12339Melon (DHL92) v3.5.1carmeB0446
Carg12339Bottle gourd (USVL1VR-Ls)carlsiB400
Carg12339Melon (DHL92) v3.5.1carmeB0447
Carg12339Melon (DHL92) v3.6.1carmedB0448
Carg12339Watermelon (Charleston Gray)carwcgB0435
Carg12339Watermelon (97103) v1carwmB0444
Carg12339Wax gourdcarwgoB0529
Carg12339Silver-seed gourdcarcarB332
Carg12339Silver-seed gourdcarcarB353
Carg12339Silver-seed gourdcarcarB447