Carg12093 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12093
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal protein L19
Location	Cucurbita_argyrosperma_scaffold_037 : 1183556 .. 1185692 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAACCCTAGAAGGCCACTCCTTTTCTCCCTTCCTCCTTTTCTCCTTTGTAAGCTTATCTTCTCTGCAACAAGCGGCCGGGAAGGGAGGAGAAAAAATGGTTTCGCTAAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGGAAAGGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCATGGCGAATTCTCGTACGCTTTCTCCATCTATGTTCACTTAGATTCTATCTACGTTCAATCTCCATGTTGTTGCTTGAAGTTTTCTGTTCTTTTGATTTCACGATCTGAAGATTGTTCTGTGTCCCTTAGGTTTTCTGGATGAAATACGTTTTCGGATCTGAAAATTTTGCCCTAGGTTAAGTCTGGAATTGTGATTCCTTGTTATTTTTCTTGGTTATGGTAATTATACTATTTTGTTTCCGTCGTCGTTAGTTGAAACGCTAGTTAATCCCTTGGCTGAATCATTTGCAGTAGATTGCTAGGAGATGATATCATTGAGTTGCATAGGAAATTGCTGTTATTGAACAAAAATTTTATGATTTGTTTAAGTTTTAAAAAACTATTTCCTCTCAGATTCTTCGCATAGCGAGGAAGGCACTTTCGCCATGGAGTTTGTTTCGCTTTTACGCCTTGTTACACTTCCAAATTCCACAAGCTCTATCTTCTGTCGGGAGCAATGTTTATCTTTAATATGTTATTACTGATATGTAACTACTGATTTTTAGCAAAAATATTGTCATTTTGTGATCTTTAGTACCTGATTTACAAATAATACTGTTTGTGACTCGGTTGCTAATTAATGTCTGGATTGTTGAGTACAGGCCAAAATATTAGGAAGTTGGTCAAGGATGGTTTCGTCATCAGGAAGCCAACCAAGATCCACTCCCGTTCTCGAGCACGCCGTATGAAAGAGGCCAAGAGAAAGGGTCGACACTCTGGATATGGTACTTTTCTTCTGAAGCCTTGATTTATGTATATTATAGAGAAGCTTTATGGTGTTTAATATTATTTTAGTACTCCCTGTGCATATATCACTGTTTTTTCCCTTTTAGACGCAAAGTCAAGAACTTGATGAGCACTATTCTGTTTTTGTACCAAAATTCACAGTTTAAACCTTATTCAGGTAAGAGAAAGGGTACCAGGGAGGCAAGGTTGCCGACCAAGATCCTCTGGATGCGGAGAATGCGTGTTCTCAGGAGATTGCTCCGCAAATATAGAGAATCCAAGAAGATCGACAAGCATATGTATCATGACATGTACATGAAAGTTAAGGGTAATGTCTTTAAGAACAAGCGTGTGTTGATGGAGAGCATCCACAAGTCGAAGGCCGAGAAGGCAAGAGAGAAGACATTGTCAGACCAATTTGAGGCTAAGAGGGCCAAGAACAAAGCCAGCAGGGAAAGGAAGTTTGCTCGGAGGGAGGAACGATTGGCACAGGTTTCTAACTCTTGACTATTACCAACATAATGTTTGTACCTTCTATGCTGTTATGCTGTCGTAATTCGTGTTTGTTCGATGTTATAGGGACCTGGGGAGAAACAACCACCCGCGACATCGGCAGCTCAACCTGCTGCTCAATCTACTCAGTAAGCATCAATCGTGATAATCTATGTAAATCTATCTTCATTTTGCGATACTAAGTATTGGTTCGTTGTGTGCAGGCCATCAAAGAAATCGAAGAAGTGAGAATTTTACAATGGAGCATCATAGGGGAAGGTTTACTTCTGATGGCACCATTATTCTAGAGTAGTAGTGTTTTGAGGAGGGCTTTTGCAGCTTTTTTGTTCAGTTTGGACCTTGTTACTTCATCATGTCGAAGACACCAAGGATTTTAAGCCTGGTAATTTTGTTAGTTTATGTTCATTGTTTTTTGTCAACCGTGTTTGCTGAATGGAATTTTTATTTGAAGATTAAATGCATATTGATTGATCAAAGGTGAGCTTTACGTGGTTTTGAATTTGCAGTTTTTCTGTTTCTCATCTCTTCTAGTATGCCAATCTTGTTCTGAACTAACCTGTAATCTAGATGACCTTGGTTGGGGAGTAAAAAAAAACACTCTATAAGGGTTTCTCAAGGGTGGAGAAACTTTTCTCTAGCAGACGCGTTTTAAAGTCTTGAGG

mRNA sequence

TAAAACCCTAGAAGGCCACTCCTTTTCTCCCTTCCTCCTTTTCTCCTTTGTAAGCTTATCTTCTCTGCAACAAGCGGCCGGGAAGGGAGGAGAAAAAATGGTTTCGCTAAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGGAAAGGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCATGGCGAATTCTCGCCAAAATATTAGGAAGTTGGTCAAGGATGGTTTCGTCATCAGGAAGCCAACCAAGATCCACTCCCGTTCTCGAGCACGCCGTATGAAAGAGGCCAAGAGAAAGGGTCGACACTCTGGATATGGTAAGAGAAAGGGTACCAGGGAGGCAAGGTTGCCGACCAAGATCCTCTGGATGCGGAGAATGCGTGTTCTCAGGAGATTGCTCCGCAAATATAGAGAATCCAAGAAGATCGACAAGCATATGTATCATGACATGTACATGAAAGTTAAGGGTAATGTCTTTAAGAACAAGCGTGTGTTGATGGAGAGCATCCACAAGTCGAAGGCCGAGAAGGCAAGAGAGAAGACATTGTCAGACCAATTTGAGGCTAAGAGGGCCAAGAACAAAGCCAGCAGGGAAAGGAAGTTTGCTCGGAGGGAGGAACGATTGGCACAGGGACCTGGGGAGAAACAACCACCCGCGACATCGGCAGCTCAACCTGCTGCTCAATCTACTCAGCCATCAAAGAAATCGAAGAAGTGAGAATTTTACAATGGAGCATCATAGGGGAAGGTTTACTTCTGATGGCACCATTATTCTAGAGTAGTAGTGTTTTGAGGAGGGCTTTTGCAGCTTTTTTGTTCAGTTTGGACCTTGTTACTTCATCATGTCGAAGACACCAAGGATTTTAAGCCTGGTAATTTTGTTAGTTTATGTTCATTGTTTTTTGTCAACCGTGTTTGCTGAATGGAATTTTTATTTGAAGATTAAATGCATATTGATTGATCAAAGGTGAGCTTTACGTGGTTTTGAATTTGCAGTTTTTCTGTTTCTCATCTCTTCTAGTATGCCAATCTTGTTCTGAACTAACCTGTAATCTAGATGACCTTGGTTGGGGAGTAAAAAAAAACACTCTATAAGGGTTTCTCAAGGGTGGAGAAACTTTTCTCTAGCAGACGCGTTTTAAAGTCTTGAGG

Coding sequence (CDS)

ATGGTTTCGCTAAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGGAAAGGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCATGGCGAATTCTCGCCAAAATATTAGGAAGTTGGTCAAGGATGGTTTCGTCATCAGGAAGCCAACCAAGATCCACTCCCGTTCTCGAGCACGCCGTATGAAAGAGGCCAAGAGAAAGGGTCGACACTCTGGATATGGTAAGAGAAAGGGTACCAGGGAGGCAAGGTTGCCGACCAAGATCCTCTGGATGCGGAGAATGCGTGTTCTCAGGAGATTGCTCCGCAAATATAGAGAATCCAAGAAGATCGACAAGCATATGTATCATGACATGTACATGAAAGTTAAGGGTAATGTCTTTAAGAACAAGCGTGTGTTGATGGAGAGCATCCACAAGTCGAAGGCCGAGAAGGCAAGAGAGAAGACATTGTCAGACCAATTTGAGGCTAAGAGGGCCAAGAACAAAGCCAGCAGGGAAAGGAAGTTTGCTCGGAGGGAGGAACGATTGGCACAGGGACCTGGGGAGAAACAACCACCCGCGACATCGGCAGCTCAACCTGCTGCTCAATCTACTCAGCCATCAAAGAAATCGAAGAAGTGA

Protein sequence

MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAQGPGEKQPPATSAAQPAAQSTQPSKKSKK

Homology

[Close]

BLAST of Carg12093 vs. NCBI nr
Match: XP_023004655.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 183/211 (86.73%), Postives = 183/211 (86.73%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK 212
              GPGEKQPPAT             KKSKK
Sbjct: 181 LAQGPGEKQPPATSAAQPAAQSTQQSKKSKK 211

[Close]

BLAST of Carg12093 vs. NCBI nr
Match: XP_023514714.1 (60S ribosomal protein L19-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180

Query: 181 XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK 212
           XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK
Sbjct: 181 XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK 211

[Close]

BLAST of Carg12093 vs. NCBI nr
Match: XP_022959808.1 (60S ribosomal protein L19-1-like [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 5.0e-88
Identity = 182/211 (86.26%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK 212
              GPGEKQPP T             KKSKK
Sbjct: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 211

[Close]

BLAST of Carg12093 vs. NCBI nr
Match: XP_004136019.1 (PREDICTED: 60S ribosomal protein L19-1 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 2.7e-86
Identity = 174/193 (90.16%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 XXXGPGEKQPPAT 194
              GPGEKQPP T
Sbjct: 181 LAQGPGEKQPPVT 193

[Close]

BLAST of Carg12093 vs. NCBI nr
Match: XP_008451555.1 (PREDICTED: 60S ribosomal protein L19-1-like [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 3.6e-86
Identity = 173/193 (89.64%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 XXXGPGEKQPPAT 194
              GPGEKQPP T
Sbjct: 181 LAQGPGEKQPPVT 193

[Close]

BLAST of Carg12093 vs. TAIR10
Match: AT1G02780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 300.4 bits (768), Expect = 8.5e-82
Identity = 160/191 (83.77%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASV+KCGKGKVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR+MK AK KGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKIDKHMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 XXXGPGEKQPP 192
              GPG    P
Sbjct: 181 LAKGPGGDVAP 191

[Close]

BLAST of Carg12093 vs. TAIR10
Match: AT4G02230.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 297.0 bits (759), Expect = 9.4e-81
Identity = 159/192 (82.81%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLA+SVLKCGK KVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR++  AKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKID+HMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 XXXGPGEKQPPA 193
              GPG   P A
Sbjct: 181 LAKGPGGDIPAA 192

[Close]

BLAST of Carg12093 vs. TAIR10
Match: AT3G16780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 294.3 bits (752), Expect = 6.1e-80
Identity = 162/211 (76.78%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLK+QKRLAASV+KCGKGKVWLDPNE  +ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRR L KYRESKKID+HMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK 212
              GPG  +   T             KKSKK
Sbjct: 181 LAQGPGGGE--TTTPAGAPQQPEVTKKKSKK 209

[Close]

BLAST of Carg12093 vs. TAIR10
Match: AT4G16030.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-09
Identity = 49/103 (47.57%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 58  HSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRL----------LR 117
           HSRSRAR      RK RH+GYG  K T EA            R+++RL            
Sbjct: 7   HSRSRAR------RKCRHTGYG--KDTMEA----------LRRIMKRLTXXXXXXXXXXX 66

Query: 118 KYRESKKIDKHM-YHDMYMKVKGNVFKNKRVLMESIHKSKAEK 150
           K+  +KKIDK + YHDM+MKVKG V+KNK VLMES+HKS  E+
Sbjct: 67  KFCWNKKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 91

[Close]

BLAST of Carg12093 vs. Swiss-Prot
Match: sp|Q9SRX2|RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.5e-80
Identity = 160/191 (83.77%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASV+KCGKGKVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR+MK AK KGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKIDKHMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 XXXGPGEKQPP 192
              GPG    P
Sbjct: 181 LAKGPGGDVAP 191

[Close]

BLAST of Carg12093 vs. Swiss-Prot
Match: sp|P49693|RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-79
Identity = 159/192 (82.81%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLA+SVLKCGK KVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR++  AKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKID+HMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 XXXGPGEKQPPA 193
              GPG   P A
Sbjct: 181 LAKGPGGDIPAA 192

[Close]

BLAST of Carg12093 vs. Swiss-Prot
Match: sp|Q9LUQ6|RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.1e-78
Identity = 162/211 (76.78%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLK+QKRLAASV+KCGKGKVWLDPNE  +ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRR L KYRESKKID+HMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK 212
              GPG  +   T             KKSKK
Sbjct: 181 LAQGPGGGE--TTTPAGAPQQPEVTKKKSKK 209

[Close]

BLAST of Carg12093 vs. Swiss-Prot
Match: sp|P36241|RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster OX=7227 GN=RpL19 PE=1 SV=2)

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-62
Identity = 122/165 (73.94%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           M SLKLQKRLAASVL+CGK KVWLDPNE+NEI+  NSRQNIRKL+KDG +I+KP  +HSR
Sbjct: 1   MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
            R R+  EA+RKGRH G+GKRKGT  AR+PTK+LWM+R RVLRRLL+KYR+SKKID+H+Y
Sbjct: 61  YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 166
           HD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165

[Close]

BLAST of Carg12093 vs. Swiss-Prot
Match: sp|Q3T0W9|RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus OX=9913 GN=RPL19 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-60
Identity = 118/165 (71.52%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           M  L+LQKRLA+SVL+CGK KVWLDPNE NEI+ ANSRQ IRKL+KDG +IRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 166
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165

[Close]

BLAST of Carg12093 vs. TrEMBL
Match: tr|A0A1S3BSJ2|A0A1S3BSJ2_CUCME (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103492800 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.4e-86
Identity = 173/193 (89.64%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 XXXGPGEKQPPAT 194
              GPGEKQPP T
Sbjct: 181 LAQGPGEKQPPVT 193

[Close]

BLAST of Carg12093 vs. TrEMBL
Match: tr|A0A2K3NPG7|A0A2K3NPG7_TRIPR (Ribosomal protein L19 OS=Trifolium pratense OX=57577 GN=L195_g001356 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 5.3e-86
Identity = 191/211 (90.52%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180

Query: 181 XXXGPGEKQPPATXXXXXXXXXXXXXKKSKK 212
           XX GPGEKQP  T             KK+KK
Sbjct: 181 XXQGPGEKQPAPTAPPATTPQPAQAPKKTKK 211

[Close]

BLAST of Carg12093 vs. TrEMBL
Match: tr|A0A2C9WBP1|A0A2C9WBP1_MANES (Ribosomal protein L19 OS=Manihot esculenta OX=3983 GN=MANES_03G199500 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 2.0e-85
Identity = 174/192 (90.62%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 XXXGPGEKQPPA 193
              GPGEK P A
Sbjct: 181 LAQGPGEKAPQA 192

[Close]

BLAST of Carg12093 vs. TrEMBL
Match: tr|C6SY65|C6SY65_SOYBN (Ribosomal protein L19 OS=Glycine max OX=3847 GN=100499920 PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 7.6e-85
Identity = 188/212 (88.68%), Postives = 191/212 (90.09%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXX  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXER 180

Query: 181 XXXGPGEKQPPA-TXXXXXXXXXXXXXKKSKK 212
              GPGE+ P A T             KKSKK
Sbjct: 181 LAQGPGERPPAAQTATPATASQPPRASKKSKK 212

[Close]

BLAST of Carg12093 vs. TrEMBL
Match: tr|W9SA46|W9SA46_9ROSA (Ribosomal protein L19 OS=Morus notabilis OX=981085 GN=L484_007486 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 7.6e-85
Identity = 172/193 (89.12%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAXXXXXXXXXXXX 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA            
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 XXXGPGEKQPPAT 194
              GPGEK P AT
Sbjct: 181 LAQGPGEKLPAAT 193

The following BLAST results are available for this feature:

BLAST of Carg12093 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004655.1	1.7e-88	86.73	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]
XP_023514714.1	1.7e-88	100.00	60S ribosomal protein L19-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959808.1	5.0e-88	86.26	60S ribosomal protein L19-1-like [Cucurbita moschata]	[more]
XP_004136019.1	2.7e-86	90.16	PREDICTED: 60S ribosomal protein L19-1 [Cucumis sativus]	[more]
XP_008451555.1	3.6e-86	89.64	PREDICTED: 60S ribosomal protein L19-1-like [Cucumis melo]	[more]

BLAST of Carg12093 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02780.1	8.5e-82	83.77	Ribosomal protein L19e family protein	[more]
AT4G02230.1	9.4e-81	82.81	Ribosomal protein L19e family protein	[more]
AT3G16780.1	6.1e-80	76.78	Ribosomal protein L19e family protein	[more]
AT4G16030.1	5.6e-09	47.57	Ribosomal protein L19e family protein	[more]

BLAST of Carg12093 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SRX2\|RL191_ARATH	1.5e-80	83.77	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
sp\|P49693\|RL193_ARATH	1.7e-79	82.81	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
sp\|Q9LUQ6\|RL192_ARATH	1.1e-78	76.78	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
sp\|P36241\|RL19_DROME	1.4e-62	73.94	60S ribosomal protein L19 OS=Drosophila melanogaster OX=7227 GN=RpL19 PE=1 SV=2	[more]
sp\|Q3T0W9\|RL19_BOVIN	1.8e-60	71.52	60S ribosomal protein L19 OS=Bos taurus OX=9913 GN=RPL19 PE=2 SV=1	[more]

BLAST of Carg12093 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSJ2\|A0A1S3BSJ2_CUCME	2.4e-86	89.64	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103492800 PE=3 SV=1	[more]
tr\|A0A2K3NPG7\|A0A2K3NPG7_TRIPR	5.3e-86	90.52	Ribosomal protein L19 OS=Trifolium pratense OX=57577 GN=L195_g001356 PE=3 SV=1	[more]
tr\|A0A2C9WBP1\|A0A2C9WBP1_MANES	2.0e-85	90.63	Ribosomal protein L19 OS=Manihot esculenta OX=3983 GN=MANES_03G199500 PE=3 SV=1	[more]
tr\|C6SY65\|C6SY65_SOYBN	7.6e-85	88.68	Ribosomal protein L19 OS=Glycine max OX=3847 GN=100499920 PE=2 SV=1	[more]
tr\|W9SA46\|W9SA46_9ROSA	7.6e-85	89.12	Ribosomal protein L19 OS=Morus notabilis OX=981085 GN=L484_007486 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0022625	cytosolic large ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR035970	60S_ribosomal_L19/L19e_sf
IPR033935	Ribosomal_L19_euka
IPR023638	Ribosomal_L19/L19e_CS
IPR015972	Ribosomal_L19/L19e_dom1
IPR000196	Ribosomal_L19/L19e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12093-RA	Carg12093-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 3.1E-97 score: 339.0
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..146 e-value: 1.2E-66 score: 223.1
IPR000196	Ribosomal protein L19/L19e	HAMAP	MF_01475	Ribosomal_L19e	coord: 3..149 score: 20.564
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..56 e-value: 2.7E-32 score: 112.2
None	No IPR available	GENE3D	G3DSA:1.10.1200.240		coord: 57..189 e-value: 2.8E-58 score: 197.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..211
None	No IPR available	PANTHER	PTHR10722:SF11	60S RIBOSOMAL PROTEIN L19-1-RELATED	coord: 1..211
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..211
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR033935	Ribosomal protein L19, eukaryotic	CDD	cd01417	Ribosomal_L19e_E	coord: 4..167 e-value: 2.88345E-78 score: 233.781
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12093	Csa7G398150	Cucumber (Chinese Long) v2	carcuB0594
Carg12093	MELO3C015988	Melon (DHL92) v3.5.1	carmeB0566
Carg12093	CSPI07G17600	Wild cucumber (PI 183967)	carcpiB0599
Carg12093	Cucsa.205460	Cucumber (Gy14) v1	carcgyB0640
Carg12093	CmaCh17G010770	Cucurbita maxima (Rimu)	carcmaB0787
Carg12093	CmaCh08G004320	Cucurbita maxima (Rimu)	carcmaB0792
Carg12093	CmoCh08G004260	Cucurbita moschata (Rifu)	carcmoB0771
Carg12093	CmoCh17G010500	Cucurbita moschata (Rifu)	carcmoB0767
Carg12093	Lsi02G024140	Bottle gourd (USVL1VR-Ls)	carlsiB511
Carg12093	Cp4.1LG17g07240	Cucurbita pepo (Zucchini)	carcpeB0803
Carg12093	CsGy7G016030	Cucumber (Gy14) v2	carcgybB0569
Carg12093	MELO3C015988.2	Melon (DHL92) v3.6.1	carmedB0572
Carg12093	CsaV3_7G029400	Cucumber (Chinese Long) v3	carcucB0601
Carg12093	Bhi09G000729	Wax gourd	carwgoB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12093	Carg07164	Silver-seed gourd	carcarB130

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12093	Watermelon (Charleston Gray)	carwcgB0547
Carg12093	Watermelon (97103) v1	carwmB0559
Carg12093	Watermelon (97103) v2	carwmbB0590
Carg12093	Cucurbita maxima (Rimu)	carcmaB0786
Carg12093	Cucurbita moschata (Rifu)	carcmoB0766
Carg12093	Cucurbita pepo (Zucchini)	carcpeB0801