Carg11860 (gene) Silver-seed gourd

Overview
NameCarg11860
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEthylene-responsive transcription factor
LocationCucurbita_argyrosperma_scaffold_036 : 527817 .. 528620 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGATGTATGGATGGGTGTATCGATGGATGGATGGATGGATGGATGGATGGTCTATAAACTAATTATGTAATTTGGGTTCCCTTCCAATTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTTAATTGTTTGATAGACAGACAGAGTGACAGACGATTGAATTTGTCGGCCATCTTTGGATTTGTCCCTTCGCCCCTCGACGACGTGGTGGCCGTCTCCTATTCTTCCTCTTATTTCTCCTTTCCCCATATAAACAAACTTGTACCCAATTCTCTCTTATGGCTCTCCATTCCAAGTGATTCAACGCAAACCCAAACCCAAATCTCAACTACCTCTAATACCATGGAACAAACACGCGACTCGACCATTCCGGAGAAGCGCAAGCAGCTGACAGGGCGGCAGGAGAAGCCGTACAGGGGGATTAGGATGAGGAAGTGGGGGAAGTGGGTCGCCGAAATCAGGGAGCCCAACAAGCGGTCTAGGATTTGGCTTGGTTCTTACACAACCCCCCTCGCTGCCGCTAGAGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCATCCGCCCGCCTTAACTTTCCCGACCTCATCTTACAGGACATGGACCACCAGCTTCTGGACGTTTCACCTTCTTCAATTCGCAAAAGAGCTATTGAGGTGGGTGCCAGAGTGGACGCCGCCGCCAACCGAACTTCTCTCCGACAATCGAAACCCATTTCCGAGAAGCCCGATTTGAACCAGTTTCCGGAGCCGGAAAGCTCGGATGAAGATTGTTGA

mRNA sequence

ATGGATGGATGTATGGATGGGTGTATCGATGGATGGATGGATGGATGGATGGATGACAGACAGAGTGACAGACGATTGAATTTGTCGGCCATCTTTGGATTTGTCCCTTCGCCCCTCGACGACGTGGTGGCCGTCTCCTATTCTTCCTCTTATTTCTCCTTTCCCCATATAAACAAACTTGTACCCAATTCTCTCTTATGGCTCTCCATTCCAAGTGATTCAACGCAAACCCAAACCCAAATCTCAACTACCTCTAATACCATGGAACAAACACGCGACTCGACCATTCCGGAGAAGCGCAAGCAGCTGACAGGGCGGCAGGAGAAGCCGTACAGGGGGATTAGGATGAGGAAGTGGGGGAAGTGGGTCGCCGAAATCAGGGAGCCCAACAAGCGGTCTAGGATTTGGCTTGGTTCTTACACAACCCCCCTCGCTGCCGCTAGAGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCATCCGCCCGCCTTAACTTTCCCGACCTCATCTTACAGGACATGGACCACCAGCTTCTGGACGTTTCACCTTCTTCAATTCGCAAAAGAGCTATTGAGGTGGGTGCCAGAGTGGACGCCGCCGCCAACCGAACTTCTCTCCGACAATCGAAACCCATTTCCGAGAAGCCCGATTTGAACCAGTTTCCGGAGCCGGAAAGCTCGGATGAAGATTGTTGA

Coding sequence (CDS)

ATGGATGGATGTATGGATGGGTGTATCGATGGATGGATGGATGGATGGATGGATGACAGACAGAGTGACAGACGATTGAATTTGTCGGCCATCTTTGGATTTGTCCCTTCGCCCCTCGACGACGTGGTGGCCGTCTCCTATTCTTCCTCTTATTTCTCCTTTCCCCATATAAACAAACTTGTACCCAATTCTCTCTTATGGCTCTCCATTCCAAGTGATTCAACGCAAACCCAAACCCAAATCTCAACTACCTCTAATACCATGGAACAAACACGCGACTCGACCATTCCGGAGAAGCGCAAGCAGCTGACAGGGCGGCAGGAGAAGCCGTACAGGGGGATTAGGATGAGGAAGTGGGGGAAGTGGGTCGCCGAAATCAGGGAGCCCAACAAGCGGTCTAGGATTTGGCTTGGTTCTTACACAACCCCCCTCGCTGCCGCTAGAGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCATCCGCCCGCCTTAACTTTCCCGACCTCATCTTACAGGACATGGACCACCAGCTTCTGGACGTTTCACCTTCTTCAATTCGCAAAAGAGCTATTGAGGTGGGTGCCAGAGTGGACGCCGCCGCCAACCGAACTTCTCTCCGACAATCGAAACCCATTTCCGAGAAGCCCGATTTGAACCAGTTTCCGGAGCCGGAAAGCTCGGATGAAGATTGTTGA

Protein sequence

MDGCMDGCIDGWMDGWMDDRQSDRRLNLSAIFGFVPSPLDDVVAVSYSSSYFSFPHINKLVPNSLLWLSIPSDSTQTQTQISTTSNTMEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLRQSKPISEKPDLNQFPEPESSDEDC
Homology
[Close]
BLAST of Carg11860 vs. NCBI nr
Match: XP_022962377.1 (ethylene-responsive transcription factor RAP2-1-like [Cucurbita moschata] >XP_023545716.1 ethylene-responsive transcription factor RAP2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 147
           MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA
Sbjct: 1   MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 60

Query: 148 RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR 207
           RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR
Sbjct: 61  RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR 120

Query: 208 QSKPISEKPDLNQFPEPESSDEDC 232
           QSKPISEKPDLNQFPEPESSDEDC
Sbjct: 121 QSKPISEKPDLNQFPEPESSDEDC 144

[Close]
BLAST of Carg11860 vs. NCBI nr
Match: XP_022997304.1 (ethylene-responsive transcription factor RAP2-1-like [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 3.8e-73
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 147
           MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA
Sbjct: 1   MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 60

Query: 148 RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR 207
           RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIR+RAIEVGARVDAAANRTSLR
Sbjct: 61  RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRRRAIEVGARVDAAANRTSLR 120

Query: 208 QSKPISEKPDLNQFPEPESSDEDC 232
           QSKPISEKPDLNQFPEPESSDEDC
Sbjct: 121 QSKPISEKPDLNQFPEPESSDEDC 144

[Close]
BLAST of Carg11860 vs. NCBI nr
Match: XP_008444599.1 (PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 3.4e-66
Identity = 133/143 (93.01%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 147
           ME++ D+TIPEKRKQ +GRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA
Sbjct: 1   MEESVDTTIPEKRKQ-SGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 60

Query: 148 RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR 207
           RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAA++TSLR
Sbjct: 61  RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAAHQTSLR 120

Query: 208 QSKPISEKPDLNQFPEPESSDED 231
           QSKPIS+KPDLNQFP+PESSDED
Sbjct: 121 QSKPISDKPDLNQFPDPESSDED 142

[Close]
BLAST of Carg11860 vs. NCBI nr
Match: XP_004142875.1 (PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis sativus] >KGN62486.1 hypothetical protein Csa_2G356600 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 6.5e-65
Identity = 131/143 (91.61%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 147
           ME++ ++TIPEKRKQ +GRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA
Sbjct: 1   MEESVETTIPEKRKQ-SGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 60

Query: 148 RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR 207
           RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAA++TSLR
Sbjct: 61  RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAAHQTSLR 120

Query: 208 QSKPISEKPDLNQFPEPESSDED 231
           QSKPIS+KPDLNQFP+PESS ED
Sbjct: 121 QSKPISDKPDLNQFPDPESSGED 142

[Close]
BLAST of Carg11860 vs. NCBI nr
Match: XP_022131468.1 (ethylene-responsive transcription factor RAP2-1-like [Momordica charantia])

HSP 1 Score: 219.2 bits (557), Expect = 1.5e-53
Identity = 117/138 (84.78%), Postives = 124/138 (89.86%), Query Frame = 0 

Query: 94  STIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTA 153
           S+  EKRKQ   RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTA
Sbjct: 9   SSAGEKRKQ--RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTA 68

Query: 154 VFYLRGPSARLNFPDLILQDM-DHQLLDVSPSSIRKRAIEVGARVDAAANRTSLRQSKPI 213
           VFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIEVGARVD  A++TSL QSKPI
Sbjct: 69  VFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARVD--AHQTSLSQSKPI 128

Query: 214 SEKPDLNQFPEPESSDED 231
           S+KPDLNQFP PE+SDED
Sbjct: 129 SDKPDLNQFPHPETSDED 142

[Close]
BLAST of Carg11860 vs. TAIR10
Match: AT1G46768.1 (related to AP2 1)

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-39
Identity = 89/149 (59.73%), Postives = 105/149 (70.47%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQ-------EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSY 147
           ME+ ++ +   KR+Q    +        KPYRGIR RKWGKWVAEIREPNKRSR+WLGSY
Sbjct: 1   MEREQEESTMRKRRQPPQEEVPNHVATRKPYRGIRRRKWGKWVAEIREPNKRSRLWLGSY 60

Query: 148 TTPLAAARAYDTAVFYLRGPSARLNFPDLILQDMDH----QLLDVSPSSIRKRAIEVGAR 207
           TT +AAARAYD AVFYLRGPSARLNFPDL+LQ+ DH       D+  + IR++A EVGAR
Sbjct: 61  TTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGAR 120

Query: 208 VDA--AANRTSLRQSKPISEKPDLNQFPE 224
           VDA  A+   S+  S P   KPDLNQ PE
Sbjct: 121 VDALLASAAPSMAHSTPPVIKPDLNQIPE 149

[Close]
BLAST of Carg11860 vs. TAIR10
Match: AT4G06746.1 (related to AP2 9)

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-35
Identity = 79/127 (62.20%), Postives = 93/127 (73.23%), Query Frame = 0 

Query: 100 RKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRG 159
           ++ L    EK Y+GIRMRKWGKWVAEIREPNKRSRIWLGSY T +AAARAYDTAVFYLRG
Sbjct: 25  KRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRG 84

Query: 160 PSARLNFPDLILQD---MDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLRQSKPISEKP 219
           PSARLNFP+ + +D    +    D+SP+ IRK+A EVGARVDA      LR    + E  
Sbjct: 85  PSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA-----ELRLENRMVENL 144

Query: 220 DLNQFPE 224
           D+N+ PE
Sbjct: 145 DMNKLPE 146

[Close]
BLAST of Carg11860 vs. TAIR10
Match: AT5G67190.1 (DREB and EAR motif protein 2)

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-34
Identity = 84/167 (50.30%), Postives = 104/167 (62.28%), Query Frame = 0 

Query: 104 TGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSAR 163
           T ++++PY+GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+AR
Sbjct: 14  TRKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAR 73

Query: 164 LNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDA-------------AANRTS----- 223
           LNFP+L L        D+S ++IRK+A EVGA+VDA               NR S     
Sbjct: 74  LNFPEL-LPGEKFSDEDMSAATIRKKATEVGAQVDALGTAVQNNRHRVFGQNRDSDVDNK 133

Query: 224 ----------------------LRQSKPISEKPDLNQFPEPESSDED 231
                                 LR    + ++ DLN+ P+PESSDE+
Sbjct: 134 NFHRNYQXXXXXXXXXXXXXXXLRSGGRLLDRVDLNKLPDPESSDEE 179

[Close]
BLAST of Carg11860 vs. TAIR10
Match: AT2G23340.1 (DREB and EAR motif protein 3)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-34
Identity = 85/146 (58.22%), Postives = 102/146 (69.86%), Query Frame = 0 

Query: 106 RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSARLN 165
           R  KPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSARLN
Sbjct: 23  RDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLN 82

Query: 166 FPDLI----LQDMDHQLLDVSPSSIRKRAIEVGARVDA----------AANR------TS 225
           FP+L+    + +   +  D+S + IR++A EVGA+VDA            NR       +
Sbjct: 83  FPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIEN 142

Query: 226 LRQSKPIS-EKPDLNQFPEPESSDED 231
            R+S   S E+ DLN+ P+PE+SD D
Sbjct: 143 CRKSGNGSLERVDLNKLPDPENSDGD 168

[Close]
BLAST of Carg11860 vs. TAIR10
Match: AT3G50260.1 (cooperatively regulated by ethylene and jasmonate 1)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-34
Identity = 77/137 (56.20%), Postives = 98/137 (71.53%), Query Frame = 0 

Query: 106 RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSARLN 165
           ++E+P++GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A LN
Sbjct: 16  KRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLN 75

Query: 166 FPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAA--------NRTSLRQSKP----IS 225
           FP+L+         D+S ++IRK+A EVGA+VDA           R    Q +     + 
Sbjct: 76  FPELLPCTSAE---DMSAATIRKKATEVGAQVDAIGATVVQNNKRRRVFSQKRDFGGGLL 135

Query: 226 EKPDLNQFPEPESSDED 231
           E  DLN+ P+PE+ D+D
Sbjct: 136 ELVDLNKLPDPENLDDD 149

[Close]
BLAST of Carg11860 vs. Swiss-Prot
Match: sp|Q8LC30|RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana OX=3702 GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.6e-38
Identity = 89/149 (59.73%), Postives = 105/149 (70.47%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQ-------EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSY 147
           ME+ ++ +   KR+Q    +        KPYRGIR RKWGKWVAEIREPNKRSR+WLGSY
Sbjct: 1   MEREQEESTMRKRRQPPQEEVPNHVATRKPYRGIRRRKWGKWVAEIREPNKRSRLWLGSY 60

Query: 148 TTPLAAARAYDTAVFYLRGPSARLNFPDLILQDMDH----QLLDVSPSSIRKRAIEVGAR 207
           TT +AAARAYD AVFYLRGPSARLNFPDL+LQ+ DH       D+  + IR++A EVGAR
Sbjct: 61  TTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGAR 120

Query: 208 VDA--AANRTSLRQSKPISEKPDLNQFPE 224
           VDA  A+   S+  S P   KPDLNQ PE
Sbjct: 121 VDALLASAAPSMAHSTPPVIKPDLNQIPE 149

[Close]
BLAST of Carg11860 vs. Swiss-Prot
Match: sp|Q8W3M3|RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.3e-34
Identity = 79/127 (62.20%), Postives = 93/127 (73.23%), Query Frame = 0 

Query: 100 RKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRG 159
           ++ L    EK Y+GIRMRKWGKWVAEIREPNKRSRIWLGSY T +AAARAYDTAVFYLRG
Sbjct: 25  KRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRG 84

Query: 160 PSARLNFPDLILQD---MDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLRQSKPISEKP 219
           PSARLNFP+ + +D    +    D+SP+ IRK+A EVGARVDA      LR    + E  
Sbjct: 85  PSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA-----ELRLENRMVENL 144

Query: 220 DLNQFPE 224
           D+N+ PE
Sbjct: 145 DMNKLPE 146

[Close]
BLAST of Carg11860 vs. Swiss-Prot
Match: sp|Q9FH94|ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 GN=ERF010 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.5e-33
Identity = 84/167 (50.30%), Postives = 104/167 (62.28%), Query Frame = 0 

Query: 104 TGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSAR 163
           T ++++PY+GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+AR
Sbjct: 14  TRKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAR 73

Query: 164 LNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDA-------------AANRTS----- 223
           LNFP+L L        D+S ++IRK+A EVGA+VDA               NR S     
Sbjct: 74  LNFPEL-LPGEKFSDEDMSAATIRKKATEVGAQVDALGTAVQNNRHRVFGQNRDSDVDNK 133

Query: 224 ----------------------LRQSKPISEKPDLNQFPEPESSDED 231
                                 LR    + ++ DLN+ P+PESSDE+
Sbjct: 134 NFHRNYQXXXXXXXXXXXXXXXLRSGGRLLDRVDLNKLPDPESSDEE 179

[Close]
BLAST of Carg11860 vs. Swiss-Prot
Match: sp|O22174|ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 GN=ERF008 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.6e-33
Identity = 85/146 (58.22%), Postives = 102/146 (69.86%), Query Frame = 0 

Query: 106 RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSARLN 165
           R  KPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSARLN
Sbjct: 23  RDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLN 82

Query: 166 FPDLI----LQDMDHQLLDVSPSSIRKRAIEVGARVDA----------AANR------TS 225
           FP+L+    + +   +  D+S + IR++A EVGA+VDA            NR       +
Sbjct: 83  FPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIEN 142

Query: 226 LRQSKPIS-EKPDLNQFPEPESSDED 231
            R+S   S E+ DLN+ P+PE+SD D
Sbjct: 143 CRKSGNGSLERVDLNKLPDPENSDGD 168

[Close]
BLAST of Carg11860 vs. Swiss-Prot
Match: sp|Q9SNE1|ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 GN=ERF011 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 77/137 (56.20%), Postives = 98/137 (71.53%), Query Frame = 0 

Query: 106 RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSARLN 165
           ++E+P++GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A LN
Sbjct: 16  KRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLN 75

Query: 166 FPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAA--------NRTSLRQSKP----IS 225
           FP+L+         D+S ++IRK+A EVGA+VDA           R    Q +     + 
Sbjct: 76  FPELLPCTSAE---DMSAATIRKKATEVGAQVDAIGATVVQNNKRRRVFSQKRDFGGGLL 135

Query: 226 EKPDLNQFPEPESSDED 231
           E  DLN+ P+PE+ D+D
Sbjct: 136 ELVDLNKLPDPENLDDD 149

[Close]
BLAST of Carg11860 vs. TrEMBL
Match: tr|A0A1S3BAR1|A0A1S3BAR1_CUCME (ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo OX=3656 GN=LOC103487870 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.3e-66
Identity = 133/143 (93.01%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 147
           ME++ D+TIPEKRKQ +GRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA
Sbjct: 1   MEESVDTTIPEKRKQ-SGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 60

Query: 148 RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR 207
           RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAA++TSLR
Sbjct: 61  RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAAHQTSLR 120

Query: 208 QSKPISEKPDLNQFPEPESSDED 231
           QSKPIS+KPDLNQFP+PESSDED
Sbjct: 121 QSKPISDKPDLNQFPDPESSDED 142

[Close]
BLAST of Carg11860 vs. TrEMBL
Match: tr|A0A0A0LR87|A0A0A0LR87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356600 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 131/143 (91.61%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 88  MEQTRDSTIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 147
           ME++ ++TIPEKRKQ +GRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA
Sbjct: 1   MEESVETTIPEKRKQ-SGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAA 60

Query: 148 RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLR 207
           RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAA++TSLR
Sbjct: 61  RAYDTAVFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAAHQTSLR 120

Query: 208 QSKPISEKPDLNQFPEPESSDED 231
           QSKPIS+KPDLNQFP+PESS ED
Sbjct: 121 QSKPISDKPDLNQFPDPESSGED 142

[Close]
BLAST of Carg11860 vs. TrEMBL
Match: tr|A0A2I4EKJ1|A0A2I4EKJ1_9ROSI (ethylene-responsive transcription factor RAP2-1-like OS=Juglans regia OX=51240 GN=LOC108990403 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 108 EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSARLNFP 167
           EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP
Sbjct: 23  EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFP 82

Query: 168 DLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAANRTSLRQSKP----ISEKPDLNQFPE 227
           DLI Q+ D +L D+S +SIRK+A EVGARVDA     +L  S+P    +SE PDLN++P 
Sbjct: 83  DLIFQEDDDELRDISAASIRKKATEVGARVDALQTARALHASQPKPSRVSETPDLNEYPG 142

Query: 228 PESSDED 231
           PE+SDED
Sbjct: 143 PENSDED 149

[Close]
BLAST of Carg11860 vs. TrEMBL
Match: tr|A0A125R6G9|A0A125R6G9_BETPL (ERF11 OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.4e-45
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 0 

Query: 109 KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPSARLNFPD 168
           KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFPD
Sbjct: 23  KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPD 82

Query: 169 LILQDMDHQLLDVSPSSIRKRAIEVGARVDA---AANRTSLRQSKPISEKPDLNQFPEPE 228
           L+ Q+ D +LLDVS +SIRK+A EVGARVDA   A    S  +S  +SE PDLN++P PE
Sbjct: 83  LLFQEEDDELLDVSAASIRKKATEVGARVDALHSAGLHASPSKSSRVSETPDLNEYPGPE 142

Query: 229 SSDED 231
           +SDED
Sbjct: 143 NSDED 147

[Close]
BLAST of Carg11860 vs. TrEMBL
Match: tr|A0A2N9H6F9|A0A2N9H6F9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35113 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.1e-44
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 0 

Query: 94  STIPEKRKQLTGRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTA 153
           +TI  ++++    QEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTA
Sbjct: 8   TTISSEKRKQRXXQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTA 67

Query: 154 VFYLRGPSARLNFPDLILQDMDH-QLLDVSPSSIRKRAIEVGARVDAAA------NRTSL 213
           +FYLRGPSARLNFPDLI ++ D  ++ D+S +SIRK+A EVGARVDA        +  S+
Sbjct: 68  MFYLRGPSARLNFPDLIFKEEDEDEVRDMSAASIRKKATEVGARVDALQTSSLHDHHASI 127

Query: 214 RQSKP---ISEKPDLNQFPEPESSDED 231
            QSK    +SE PDLN+FP PESSDED
Sbjct: 128 SQSKSSSRVSEPPDLNEFPNPESSDED 154

The following BLAST results are available for this feature:
BLAST of Carg11860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022962377.11.7e-73100.00ethylene-responsive transcription factor RAP2-1-like [Cucurbita moschata] >XP_02... [more]
XP_022997304.13.8e-7399.31ethylene-responsive transcription factor RAP2-1-like [Cucurbita maxima][more]
XP_008444599.13.4e-6693.01PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo][more]
XP_004142875.16.5e-6591.61PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis sativus] >KG... [more]
XP_022131468.11.5e-5384.78ethylene-responsive transcription factor RAP2-1-like [Momordica charantia][more]
BLAST of Carg11860 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G46768.12.6e-3959.73related to AP2 1[more]
AT4G06746.12.9e-3562.20related to AP2 9[more]
AT5G67190.12.5e-3450.30DREB and EAR motif protein 2[more]
AT2G23340.14.2e-3458.22DREB and EAR motif protein 3[more]
AT3G50260.17.2e-3456.20cooperatively regulated by ethylene and jasmonate 1[more]
BLAST of Carg11860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LC30|RAP21_ARATH4.6e-3859.73Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q8W3M3|RAP29_ARATH5.3e-3462.20Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q9FH94|ERF10_ARATH4.5e-3350.30Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|O22174|ERF08_ARATH7.6e-3358.22Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q9SNE1|ERF11_ARATH1.3e-3256.20Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Carg11860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BAR1|A0A1S3BAR1_CUCME2.3e-6693.01ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LR87|A0A0A0LR87_CUCSA4.3e-6591.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356600 PE=4 SV=1[more]
tr|A0A2I4EKJ1|A0A2I4EKJ1_9ROSI1.7e-4575.59ethylene-responsive transcription factor RAP2-1-like OS=Juglans regia OX=51240 G... [more]
tr|A0A125R6G9|A0A125R6G9_BETPL8.4e-4576.80ERF11 OS=Betula platyphylla OX=78630 PE=2 SV=1[more]
tr|A0A2N9H6F9|A0A2N9H6F9_FAGSY7.1e-4467.35Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35113 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR036955AP2/ERF_dom_sf
IPR001471AP2/ERF_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11860-RACarg11860-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 111..122
score: 64.24
coord: 149..169
score: 52.99
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 110..173
e-value: 6.8E-35
score: 131.9
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 111..159
e-value: 3.8E-10
score: 39.8
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 110..167
score: 22.207
IPR001471AP2/ERF domainCDDcd00018AP2coord: 111..169
e-value: 1.11871E-27
score: 100.424
IPR036955AP2/ERF domain superfamilyGENE3DG3DSA:3.30.730.10coord: 109..169
e-value: 2.0E-28
score: 100.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..231
NoneNo IPR availablePANTHERPTHR31729FAMILY NOT NAMEDcoord: 84..230
NoneNo IPR availablePRODOMPD968187coord: 1..30
e-value: 0.001
score: 100.0
IPR016177DNA-binding domain superfamilySUPERFAMILYSSF54171DNA-binding domaincoord: 110..168

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11860Cla020648Watermelon (97103) v1carwmB0173
Carg11860Cla013963Watermelon (97103) v1carwmB0176
Carg11860Cla022591Watermelon (97103) v1carwmB0172
Carg11860Csa6G491030Cucumber (Chinese Long) v2carcuB0205
Carg11860Csa2G356600Cucumber (Chinese Long) v2carcuB0202
Carg11860MELO3C007573Melon (DHL92) v3.5.1carmeB0188
Carg11860MELO3C010840Melon (DHL92) v3.5.1carmeB0186
Carg11860ClCG01G016940Watermelon (Charleston Gray)carwcgB0173
Carg11860ClCG08G016120Watermelon (Charleston Gray)carwcgB0178
Carg11860ClCG05G020080Watermelon (Charleston Gray)carwcgB0175
Carg11860CSPI06G28260Wild cucumber (PI 183967)carcpiB0212
Carg11860CSPI02G18900Wild cucumber (PI 183967)carcpiB0209
Carg11860Cucsa.102560Cucumber (Gy14) v1carcgyB0219
Carg11860Cucsa.395960Cucumber (Gy14) v1carcgyB0225
Carg11860CmaCh07G006930Cucurbita maxima (Rimu)carcmaB0257
Carg11860CmaCh05G001690Cucurbita maxima (Rimu)carcmaB0256
Carg11860CmaCh01G018260Cucurbita maxima (Rimu)carcmaB0251
Carg11860CmaCh09G002460Cucurbita maxima (Rimu)carcmaB0247
Carg11860CmaCh12G005630Cucurbita maxima (Rimu)carcmaB0249
Carg11860CmoCh05G001680Cucurbita moschata (Rifu)carcmoB0263
Carg11860CmoCh01G018820Cucurbita moschata (Rifu)carcmoB0259
Carg11860CmoCh09G002400Cucurbita moschata (Rifu)carcmoB0255
Carg11860CmoCh12G005060Cucurbita moschata (Rifu)carcmoB0257
Carg11860Lsi08G014900Bottle gourd (USVL1VR-Ls)carlsiB164
Carg11860Lsi01G009650Bottle gourd (USVL1VR-Ls)carlsiB161
Carg11860Lsi04G015340Bottle gourd (USVL1VR-Ls)carlsiB162
Carg11860CsGy2G018800Cucumber (Gy14) v2carcgybB0195
Carg11860CsGy4G022650Cucumber (Gy14) v2carcgybB0197
Carg11860CsGy6G027730Cucumber (Gy14) v2carcgybB0198
Carg11860MELO3C007573.2Melon (DHL92) v3.6.1carmedB0192
Carg11860MELO3C010840.2Melon (DHL92) v3.6.1carmedB0190
Carg11860CsaV3_6G043400Cucumber (Chinese Long) v3carcucB0212
Carg11860CsaV3_2G026500Cucumber (Chinese Long) v3carcucB0209
Carg11860Cla97C01G016080Watermelon (97103) v2carwmbB0185
Carg11860Cla97C05G101750Watermelon (97103) v2carwmbB0187
Carg11860Cla97C08G159750Watermelon (97103) v2carwmbB0190
Carg11860Bhi04G000343Wax gourdcarwgoB0231
Carg11860Bhi03G000710Wax gourdcarwgoB0233
Carg11860Bhi09G002709Wax gourdcarwgoB0236
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11860Carg26164Silver-seed gourdcarcarB090
Carg11860Carg00833Silver-seed gourdcarcarB218
Carg11860Carg27315Silver-seed gourdcarcarB221
Carg11860Carg10610Silver-seed gourdcarcarB224
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11860Silver-seed gourdcarcarB225
Carg11860Cucumber (Gy14) v2carcgybB0199
Carg11860Cucumber (Gy14) v1carcgyB0224
Carg11860Cucurbita maxima (Rimu)carcmaB0254
Carg11860Cucurbita maxima (Rimu)carcmaB0248
Carg11860Cucurbita maxima (Rimu)carcmaB0253
Carg11860Cucurbita moschata (Rifu)carcmoB0256
Carg11860Cucurbita moschata (Rifu)carcmoB0262
Carg11860Cucurbita moschata (Rifu)carcmoB0264
Carg11860Cucurbita pepo (Zucchini)carcpeB0261
Carg11860Cucurbita pepo (Zucchini)carcpeB0263
Carg11860Cucurbita pepo (Zucchini)carcpeB0264
Carg11860Cucurbita pepo (Zucchini)carcpeB0265
Carg11860Cucurbita pepo (Zucchini)carcpeB0266
Carg11860Cucurbita pepo (Zucchini)carcpeB0267
Carg11860Cucurbita pepo (Zucchini)carcpeB0268
Carg11860Wild cucumber (PI 183967)carcpiB0211
Carg11860Cucumber (Chinese Long) v2carcuB0204
Carg11860Cucumber (Chinese Long) v3carcucB0211
Carg11860Melon (DHL92) v3.5.1carmeB0185
Carg11860Melon (DHL92) v3.5.1carmeB0187
Carg11860Melon (DHL92) v3.6.1carmedB0189
Carg11860Melon (DHL92) v3.6.1carmedB0191