Carg27315 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27315
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ethylene-responsive transcription factor RAP2-1
Location	Cucurbita_argyrosperma_scaffold_409 : 81233 .. 81846 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACATCACAGTTGTACTATGAATGAAGTGGGAGACTCCATGAGTGCTGCCAGAGCCTACGACATGGTGGTGTTTTACCTGAGAGGACCATCCGCCTGCCGTAACTTCCCGGACCTGATCTTACAGGACATGAATCACCAGCTGGTCGATTTTCCCTCTTCTTAAATACGCAGAAGAGCTATTGAGGTCGGTGCTAGAGTTGACGCTGCTGCTCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCGGAAAGCTCCGACGAAGCTTTTGATCGACGATCACTGTTTCATTGATAGCTTCGAAACAGGGGAGATGGTAAAGCAAGCTCGTTGGTTGATGGATCCGACTACTAATCTAACTCTTGTTCTGCATTATTTTTGAACTTTTTGGATTAATTTTTGTTCTTTTTTTTTTTTTTATCTTCCGGACAAGAAGAAAGAAGATGATGATAATGATAAGGATGAGTTCTTCTGGGGAACCGCCGTGTGGAGTTCACAAATCAGAGTATAACGTGGCCGTCGCCGTCGCCGTCGCCATGGTGAACGGAAACCCCAAACTTGCTGTTTTCATAAAATGA

mRNA sequence

ATGGGACATCACAGTTGTACTATGAATGAAGTGGGAGACTCCATGAGTGCTGCCAGAGCCTACGACATGGTGGTAAGAGCTATTGAGGTCGGTGCTAGAGTTGACGCTGCTGCTCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCGGAAAGCTCCGACGAAGCTTTTGATCGACGATCACTAAGAAAGAAGATGATGATAATGATAAGGATGAGTTCTTCTGGGGAACCGCCGTGTGGAGTTCACAAATCAGAGTATAACGTGGCCGTCGCCGTCGCCGTCGCCATGGTGAACGGAAACCCCAAACTTGCTGTTTTCATAAAATGA

Coding sequence (CDS)

ATGGGACATCACAGTTGTACTATGAATGAAGTGGGAGACTCCATGAGTGCTGCCAGAGCCTACGACATGGTGGTAAGAGCTATTGAGGTCGGTGCTAGAGTTGACGCTGCTGCTCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCGGAAAGCTCCGACGAAGCTTTTGATCGACGATCACTAAGAAAGAAGATGATGATAATGATAAGGATGAGTTCTTCTGGGGAACCGCCGTGTGGAGTTCACAAATCAGAGTATAACGTGGCCGTCGCCGTCGCCGTCGCCATGGTGAACGGAAACCCCAAACTTGCTGTTTTCATAAAATGA

Protein sequence

MGHHSCTMNEVGDSMSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEAFDRRSLRKKMMIMIRMSSSGEPPCGVHKSEYNVAVAVAVAMVNGNPKLAVFIK

Homology

[Close]

BLAST of Carg27315 vs. NCBI nr
Match: XP_023536908.1 (ethylene-responsive transcription factor RAP2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 7.1e-15
Identity = 55/94 (58.51%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 8  MNEVGDSMSAARAYDMVV----------------------------------RAIEVGAR 67
          MNE GDSMSA RAYD VV                                  RAIEVGAR
Sbjct: 1  MNEAGDSMSATRAYDTVVFYLRGPSARRNFPDLILQDMNHQLLDLSLSSIRRRAIEVGAR 60

[Close]

BLAST of Carg27315 vs. NCBI nr
Match: XP_008444599.1 (PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 26  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE 67
           RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESSDE
Sbjct: 101 RAIEVGARVDAAAHQTSLRQSKPISDKPDLNQFPDPESSDE 141

[Close]

BLAST of Carg27315 vs. NCBI nr
Match: XP_004142875.1 (PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis sativus] >KGN62486.1 hypothetical protein Csa_2G356600 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 26  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE 67
           RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESS E
Sbjct: 101 RAIEVGARVDAAAHQTSLRQSKPISDKPDLNQFPDPESSGE 141

[Close]

BLAST of Carg27315 vs. NCBI nr
Match: XP_022962377.1 (ethylene-responsive transcription factor RAP2-1-like [Cucurbita moschata] >XP_023545716.1 ethylene-responsive transcription factor RAP2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 26  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE 67
           RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+PESSDE
Sbjct: 102 RAIEVGARVDAAANRTSLRQSKPISEKPDLNQFPEPESSDE 142

[Close]

BLAST of Carg27315 vs. NCBI nr
Match: XP_022997304.1 (ethylene-responsive transcription factor RAP2-1-like [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 26  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE 67
           RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+PESSDE
Sbjct: 102 RAIEVGARVDAAANRTSLRQSKPISEKPDLNQFPEPESSDE 142

[Close]

BLAST of Carg27315 vs. TrEMBL
Match: tr|A0A1S3BAR1|A0A1S3BAR1_CUCME (ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo OX=3656 GN=LOC103487870 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 26  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE 67
           RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESSDE
Sbjct: 101 RAIEVGARVDAAAHQTSLRQSKPISDKPDLNQFPDPESSDE 141

[Close]

BLAST of Carg27315 vs. TrEMBL
Match: tr|A0A0A0LR87|A0A0A0LR87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356600 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-10
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 26  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE 67
           RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESS E
Sbjct: 101 RAIEVGARVDAAAHQTSLRQSKPISDKPDLNQFPDPESSGE 141

[Close]

BLAST of Carg27315 vs. TrEMBL
Match: tr|A0A2I4ESD0|A0A2I4ESD0_9ROSI (ethylene-responsive transcription factor RAP2-1-like OS=Juglans regia OX=51240 GN=LOC108992253 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.9e-04
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 8   MNEVGDSMSAARAYDMVVRAIEVGARVDA--AAHHASQRQSKPISDKPDLNQFPDPESSD 67
           +N++GD  +A+    +  +A EVGARVDA  AAHH SQ +S  +S+ PDLN++P PE+SD
Sbjct: 95  VNDLGDISAAS----IRKKATEVGARVDAIEAAHHPSQPKSGRVSEPPDLNEYPGPENSD 151

[Close]

BLAST of Carg27315 vs. TrEMBL
Match: tr|A0A2I4HR04|A0A2I4HR04_9ROSI (ethylene-responsive transcription factor RAP2-1-like OS=Juglans regia OX=51240 GN=LOC109020552 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.9e-04
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 8   MNEVGDSMSAARAYDMVVRAIEVGARVDA--AAHHASQRQSKPISDKPDLNQFPDPESSD 67
           +N++GD  +A+    +  +A EVGARVDA  AAHH SQ +S  +S+ PDLN++P PE+SD
Sbjct: 102 VNDLGDISAAS----IRKKATEVGARVDAIEAAHHPSQPKSGRVSEPPDLNEYPGPENSD 158

The following BLAST results are available for this feature:

BLAST of Carg27315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536908.1	7.1e-15	58.51	ethylene-responsive transcription factor RAP2-1-like [Cucurbita pepo subsp. pepo...	[more]
XP_008444599.1	1.8e-10	92.68	PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo]	[more]
XP_004142875.1	1.2e-09	90.24	PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis sativus] >KG...	[more]
XP_022962377.1	1.0e-08	85.37	ethylene-responsive transcription factor RAP2-1-like [Cucurbita moschata] >XP_02...	[more]
XP_022997304.1	1.0e-08	85.37	ethylene-responsive transcription factor RAP2-1-like [Cucurbita maxima]	[more]

BLAST of Carg27315 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg27315 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27315 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BAR1\|A0A1S3BAR1_CUCME	1.2e-10	92.68	ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LR87\|A0A0A0LR87_CUCSA	7.8e-10	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356600 PE=4 SV=1	[more]
tr\|A0A2I4ESD0\|A0A2I4ESD0_9ROSI	4.9e-04	50.82	ethylene-responsive transcription factor RAP2-1-like OS=Juglans regia OX=51240 G...	[more]
tr\|A0A2I4HR04\|A0A2I4HR04_9ROSI	4.9e-04	50.82	ethylene-responsive transcription factor RAP2-1-like OS=Juglans regia OX=51240 G...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27315-RA	Carg27315-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27315	CmaCh12G005630	Cucurbita maxima (Rimu)	carcmaB0638
Carg27315	CmoCh12G005060	Cucurbita moschata (Rifu)	carcmoB0620
Carg27315	Cla97C08G159750	Watermelon (97103) v2	carwmbB0482
Carg27315	Bhi04G000343	Wax gourd	carwgoB0557

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg27315	Carg11860	Silver-seed gourd	carcarB221

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27315	Cucumber (Chinese Long) v2	carcuB0490
Carg27315	Cucumber (Gy14) v2	carcgybB0467
Carg27315	Cucumber (Gy14) v1	carcgyB0529
Carg27315	Cucurbita maxima (Rimu)	carcmaB0639
Carg27315	Cucurbita moschata (Rifu)	carcmoB0621
Carg27315	Cucurbita pepo (Zucchini)	carcpeB0643
Carg27315	Cucurbita pepo (Zucchini)	carcpeB0644
Carg27315	Wild cucumber (PI 183967)	carcpiB0496
Carg27315	Cucumber (Chinese Long) v3	carcucB0493
Carg27315	Bottle gourd (USVL1VR-Ls)	carlsiB416
Carg27315	Melon (DHL92) v3.5.1	carmeB0465
Carg27315	Melon (DHL92) v3.6.1	carmedB0468
Carg27315	Watermelon (Charleston Gray)	carwcgB0447
Carg27315	Watermelon (97103) v1	carwmB0457