Carg11639 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11639
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Location	Cucurbita_argyrosperma_scaffold_035 : 311058 .. 314501 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACTCAAACGATACCGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGTTCGTTGTTTCCAACTTTCTATATTTCTATTTGCCGCTTGTTTGAACTCTCCAGCTATGTTCTAAGGAAGCAATGATTTATATTAGGAACTCATCTGTTGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAGGTGTGTTTTCAATCCGTATTTCCTATTAGCGAATTGTATTTGGTGTCCAACCTTGTGCTTTCATCATTATTTCACCAATGACTTTTCTATTTAGTTTTTGTAAAGTTTGATTCTCTATTTATTTCCATGGATTTTTCGTCATCCTTCATGGGATTTAATGGCTTCACGTGTAATCTACTTCTGCATTGTGTTTAGTCTTCTCACTGCGTTTGGAGCTGTTTTTGTGGTTTTGTGTTTTCACTTCTCTTATTTGAAGTTGAGCTGACATTGTAGATTCTTAAGACGTGGCTTCAATTATTTACTTCGATTGCATATCGATGGATTTCTTTATCTAGCTATATATATATATATATATTGTATATGTATATGTATGTACATATAGATATATGAGTGAGGATTTGAACCTTCAAGAAGTAGGCGATATATCTTAACCCCAAAATTTCTATCTTAAACTCCAGACGACGATGCAACAAGATTAGGAATATCAACATGTTTATGTTTCTCTCTAACCAAATTTACTGAAGAGTTGCTTCACCATGTTATAGAAGAGTTCCTTAGCCTTCAGTTTGAAGGAGTTCCCTCCTGCAATTGAAAGTTCAGATCCTTGACCTGCAAAGGGAAAACATAAAATAGTCCTGCATCCTGTACCACACTGCAATAAAATGGGCAGAGAAAGGAAACAAGATTCGATCTCTCAACTTATGGTCTACTCATATTGCAACACCCTTCCCTAAGGATAACATAAGCAATTATTTTTCTGAGTTTCATCAGCACTAGAAGTGTTATTCTTGTTGCTACCATGGATCCCAAACCAGTAGAACACGCTTGTCTTCTTCTGATACCTATAATTCCATACCAGACTACTGAGGGAAGGAGGATAGCAATCTCAGTTGTTGACCTCTTGAAGAACAGGCTCAAGAAAATTTTCCTGAACTTTTTGAATACCAAATCCTGACATGTTGTCCATCAGTAGTAAAGAGATGATTTACCTACCTGATCAAAGTTAACCCTCCCTGAAACTCCCAATCTTGAGATACCAAGTTCCATAGTCTCAGAATTTCTAGAGTCATAAATGTTGAACTTCTTTTATTTGTGAGGGCATAGACTTGAGATCCGAGATAGTTGAAAGAGTTTTGGGACCGTTGATCCTTCTTGACGTGAACAGATGTATCTACCTTTGCCCACCTTGATAACTGAATTCTCTTATGAATTATGTGACATTGTACTTTTGGAGATTAGAAACCACAAGCTTACGTGCTGCTATACGAGCATCTACCAGAAGTCCAAATCCCAATCTAACAAAAAGGGCCAATCCATCAGGTTAGGGTTTCTCATAATCAAGCATGCAGGATAACCCTTCCTTTTTATTTTTTTCCCGCATTAATCAGGATATTCTTAACGAGTACGTGATTCAGGGTTTGTCCATCTTCCTTGAAGGGCAATGGAAATGGTAAAGAGAAGGACCATCTAAGGTTTTGTAGTGCAAATATTAACAGCACACTCATGTCAAAGCTTAAACCATGTTTTGAAGGACTCTTGAACCTTAAACCTTGAGGCTTGCCTAGCTTCAGGTTGAGTCTCAAATTTTTAAGCCTCTATACTTGGCCTTCTTTGATTCATAAGGGGATTATGCCTTAACTGTAAAAATGTATTACATCTACCGTAGGATATAACATCTTGAAACCCAATCAATAATTTTTCAGTCCAACAGAAGAGACCAAACAATCATACCCACTAAAAGTCTCCAAAGGTCTTTTTGTCAGAGAAGCCTATGCAGTGAAACTTTGCTCAGAAATCCATAATAGAAGGAATGCACCAAATTTTTTGGCTTGCCAGCAATATGTTCATAAAATCGAAGTGAAGTGGAAAGTAATGGAAAGACAATCCAACGATTTTCCTTGATTCTGCAGGGTTTTTTTATTTACAAATACAATTCTAAATTCCTTTTCATATGGCTTTATATGTTATTGTCTGTCTTTTTTTCGTTGTTCAATAATCTAGTTCAAAAAGAACAAAGGTGGTTTAATTTTGTGCATAAATTGCTGAGGCTCAATGTTCACAACAATGGTAACTATTGATTTCTTTTCACGGTTTAATTTCTTGTTGGCAATTATTTCATGAGTTTCTTACCTCAAATGCAGTAGGATTCTATGGTTGTTTCATGCTGTTAATTAAAGTGCATGTAAATTGGCTTGGATTGCTAATTATGTTTATTGCTGTTGTAATTAGACCAGGTTTTTGTGTTATTATTGAGCCCTTGATTTGGGCCTGGGCAATTCTGTCTTTTACTTAATGGGTTGCCATCTGATCTGTTTTCCATCTTCTGCATTAACAAGAATAAGATTTTTAGTACCCCCCAGATGCTCTGAACCATGTTTTTTAATCAATGAAACAAATGATAGTTGGCTAGGATGGCTAGCTTTGTCATGCCCATTGCTATAGGGTATTTTCCGATAAGAGCACTACTGAATCGAGGATAGTCGTTCATTCTCAGAATTCAATGTAGTGTTGGGAATTCCTGCCCGCGATGCAATTAGATGATATATGAAAGGATAGTGTCCTTTGATGCACGTCTGTTTATTACTTGGTTTTTTGGACAGAAGATGATAAATGGCATTATTTATGTAGGGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAGGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACAATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAGTACGTCTCTTTCCCACTCTCCATTCATTTCTGCACAGATTATAGTTTCGCTAAACATCTAATTTGGTGTACTCTCCATCTATAGACAAGTTTTCTCATCAGACCCAGGTGACGAAAAGCCTGCAGCTAAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGTGAGAGACCTGACTCTGTAGTTACTGAAGATGTTCTTCTCGATTTTATTATACCTTCTGAAATAGAACGATCCATTTTTGTAAATGCAGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCGTTGGAATTTTTGAAGAAAAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAA

mRNA sequence

ATGTCGGACTCAAACGATACCGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAGGGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAGGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACAATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAACAAGTTTTCTCATCAGACCCAGGTGACGAAAAGCCTGCAGCTAAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCGTTGGAATTTTTGAAGAAAAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAA

Coding sequence (CDS)

ATGTCGGACTCAAACGATACCGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAGGGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAGGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACAATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAACAAGTTTTCTCATCAGACCCAGGTGACGAAAAGCCTGCAGCTAAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCGTTGGAATTTTTGAAGAAAAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAA

Protein sequence

MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

Homology

[Close]

BLAST of Carg11639 vs. NCBI nr
Match: XP_022947715.1 (uncharacterized protein LOC111451498 [Cucurbita moschata])

HSP 1 Score: 318.2 bits (814), Expect = 1.8e-83
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK
Sbjct: 1   MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
            ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK
Sbjct: 61  SETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639 vs. NCBI nr
Match: XP_023006926.1 (uncharacterized protein LOC111499570 [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 3.8e-81
Identity = 171/178 (96.07%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD NDTDSDAPEEFTAEQGIQQDEEIRK+QKESSARVVREGKERRRQWAEKKTPR SKK
Sbjct: 1   MSDPNDTDSDAPEEFTAEQGIQQDEEIRKLQKESSARVVREGKERRRQWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKT+R+KSK
Sbjct: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTRRRKSK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLN RAPSQC QNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNARAPSQCSQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639 vs. NCBI nr
Match: XP_023533260.1 (uncharacterized protein LOC111795202 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.1 bits (793), Expect = 5.0e-81
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD NDTDSDAPEEFTAEQGIQQDEEI KVQKESSARVVREGKERRRQWAEKKTPR SKK
Sbjct: 119 MSDPNDTDSDAPEEFTAEQGIQQDEEITKVQKESSARVVREGKERRRQWAEKKTPRPSKK 178

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GETVEDVAETPRH+DQVSKLGML SNLVQLLAEREKQVFSSDPGDEKPAAKSKTKR+KSK
Sbjct: 179 GETVEDVAETPRHDDQVSKLGMLSSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRRKSK 238

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Sbjct: 239 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 296

[Close]

BLAST of Carg11639 vs. NCBI nr
Match: XP_022158697.1 (uncharacterized protein LOC111025162 [Momordica charantia])

HSP 1 Score: 279.6 bits (714), Expect = 7.2e-72
Identity = 155/177 (87.57%), Postives = 162/177 (91.53%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKK
Sbjct: 1   MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFSSDPGDEKPAAK KTKRKK+K
Sbjct: 61  GETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFSSDPGDEKPAAKPKTKRKKTK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTK 178
           SSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALR LSSSGLLTK
Sbjct: 121 SSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRRLSSSGLLTK 177

[Close]

BLAST of Carg11639 vs. NCBI nr
Match: XP_004148046.1 (PREDICTED: uncharacterized protein LOC101208336 [Cucumis sativus] >KGN62039.1 hypothetical protein Csa_2G292200 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 146/178 (82.02%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GE VED+AE PR++D++SKLG LPSN+VQLL +REKQVFSSD GDEKPA K K KRKK+K
Sbjct: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFSSDSGDEKPAIKPKQKRKKTK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639 vs. TAIR10
Match: AT4G37090.1 (unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 6.8e-24
Identity = 80/183 (43.72%), Postives = 108/183 (59.02%), Query Frame = 0


Query: 1   MSDS--NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRAS 60
           MSD+   D+DSDAPEE T EQ   ++E + K+Q+E+  RV RE KERR+  AE+ T R S
Sbjct: 1   MSDNKDRDSDSDAPEELTQEQAKLEEEALWKIQRENKNRVSREKKERRKLMAEQVTLRKS 60

Query: 61  KKGETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTK 120
           +K E +EDV   E P  N + ++  G L  +++  LAEREKQ   S              
Sbjct: 61  RKIEIIEDVVEEEEPEENSEALANKGFLSKDIIDFLAEREKQKAES-XXXXXXXXXXXXX 120

Query: 121 RKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLL 179
                SSGIETV+  E  P +CL+  L+FLK R+  +PRSSSV+ NS QALRL + + L 
Sbjct: 121 XXXXXSSGIETVIYKEIPPPECLKTGLDFLKMRRAQVPRSSSVIKNSGQALRLATGAALA 180

[Close]

BLAST of Carg11639 vs. TrEMBL
Match: tr|A0A0A0LM07|A0A0A0LM07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292200 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.4e-68
Identity = 146/178 (82.02%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GE VED+AE PR++D++SKLG LPSN+VQLL +REKQVFSSD GDEKPA K K KRKK+K
Sbjct: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFSSDSGDEKPAIKPKQKRKKTK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639 vs. TrEMBL
Match: tr|A0A1S3C749|A0A1S3C749_CUCME (uncharacterized protein LOC103497440 OS=Cucumis melo OX=3656 GN=LOC103497440 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 145/179 (81.01%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQ ES ARV+REGKERRR WAEKKTPR SKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQNESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GE VED+AE PR++D+VSKLG LPSN+VQLL +REKQVFSSD GDEKPA K K KRKK+K
Sbjct: 61  GEIVEDLAEPPRNDDKVSKLGTLPSNVVQLLVDREKQVFSSDLGDEKPAIKPKQKRKKTK 120

Query: 121 -SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
            SSGIETVLL+ER PS CLQNSLEFLKKRKMN+ RSS+VL+N NQA RLLSSSGLLTKK
Sbjct: 121 SSSGIETVLLSERTPSHCLQNSLEFLKKRKMNVARSSTVLNNPNQAFRLLSSSGLLTKK 179

[Close]

BLAST of Carg11639 vs. TrEMBL
Match: tr|A0A2C9URG4|A0A2C9URG4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G131900 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 7.9e-51
Identity = 117/178 (65.73%), Postives = 143/178 (80.34%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MS   D+DSDAPEEFT+EQG QQDEEIRKVQKE+  R+VREGKERRR WA++KTPR SK 
Sbjct: 1   MSGREDSDSDAPEEFTSEQGTQQDEEIRKVQKENKTRIVREGKERRRLWAQRKTPRPSKG 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
            E+V+DV E     + +   GMLP+++VQLLA REK+VF SD  DEK  AK   ++KK K
Sbjct: 61  DESVQDVMEAETEKESLGTEGMLPNDIVQLLAAREKKVFLSDSEDEKVDAKLPPRKKKPK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSG+ETV+L E +P QCLQNSL+FLKK+KM + RSSSVL+NSNQALRL+S+SGLL+KK
Sbjct: 121 SSGMETVILKEMSPPQCLQNSLDFLKKKKMQVSRSSSVLNNSNQALRLISTSGLLSKK 178

[Close]

BLAST of Carg11639 vs. TrEMBL
Match: tr|A0A2P5BZ49|A0A2P5BZ49_PARAD (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_198070 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.3e-49
Identity = 118/176 (67.05%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MS   D DSDAPEEFTAEQGI QD+E+ KVQKE+ ARV REGKERRR WA++KTP+ SK+
Sbjct: 1   MSGKEDNDSDAPEEFTAEQGILQDQELTKVQKENKARVAREGKERRRIWAQRKTPKPSKE 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKS- 120
            E+V+DVA+T   ++   + GMLP  +VQLLA REKQVF SD  DEK   K  +KRKK  
Sbjct: 61  AESVQDVAQTENPDEPSGRAGMLPDEIVQLLAAREKQVFLSDSEDEKTEVKRSSKRKKKP 120

Query: 121 KSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLL 176
            SSG++TV+LNE   +QCLQNSLEFLKKRKM + RSSSVL NSNQALRLLSSSGLL
Sbjct: 121 SSSGVDTVVLNEIPSAQCLQNSLEFLKKRKMQVSRSSSVLRNSNQALRLLSSSGLL 176

[Close]

BLAST of Carg11639 vs. TrEMBL
Match: tr|A0A2P5FY16|A0A2P5FY16_9ROSA (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Trema orientalis OX=63057 GN=TorRG33x02_016330 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 117/176 (66.48%), Postives = 139/176 (78.98%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MS   D DSDAPEEFTAEQGI QD+E+ KVQKE+ ARV REGKERRR WA++KTP+ SK+
Sbjct: 1   MSGKEDYDSDAPEEFTAEQGILQDQELTKVQKENKARVAREGKERRRIWAQRKTPKPSKE 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKS- 120
            E+V+DVA+T   ++   + GMLP+ +VQLLA REKQVF SD  DEK   K  +KRKK  
Sbjct: 61  AESVQDVAQTGNPDEPSGREGMLPNEIVQLLAAREKQVFLSDSEDEKTEVKRSSKRKKKP 120

Query: 121 KSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLL 176
            SSG++T++LNE   +QCLQNSLEFLKKRKM + RSSSVL NSNQALRLLSSSGLL
Sbjct: 121 SSSGVDTIVLNEIPSAQCLQNSLEFLKKRKMQVSRSSSVLKNSNQALRLLSSSGLL 176

The following BLAST results are available for this feature:

BLAST of Carg11639 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947715.1	1.8e-83	98.88	uncharacterized protein LOC111451498 [Cucurbita moschata]	[more]
XP_023006926.1	3.8e-81	96.07	uncharacterized protein LOC111499570 [Cucurbita maxima]	[more]
XP_023533260.1	5.0e-81	96.63	uncharacterized protein LOC111795202 [Cucurbita pepo subsp. pepo]	[more]
XP_022158697.1	7.2e-72	87.57	uncharacterized protein LOC111025162 [Momordica charantia]	[more]
XP_004148046.1	3.7e-68	82.02	PREDICTED: uncharacterized protein LOC101208336 [Cucumis sativus] >KGN62039.1 hy...	[more]

BLAST of Carg11639 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37090.1	6.8e-24	43.72	unknown protein	[more]

BLAST of Carg11639 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11639 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM07\|A0A0A0LM07_CUCSA	2.4e-68	82.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292200 PE=4 SV=1	[more]
tr\|A0A1S3C749\|A0A1S3C749_CUCME	1.1e-65	81.01	uncharacterized protein LOC103497440 OS=Cucumis melo OX=3656 GN=LOC103497440 PE=...	[more]
tr\|A0A2C9URG4\|A0A2C9URG4_MANES	7.9e-51	65.73	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G131900 PE=4 SV=...	[more]
tr\|A0A2P5BZ49\|A0A2P5BZ49_PARAD	4.3e-49	67.05	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Paraspo...	[more]
tr\|A0A2P5FY16\|A0A2P5FY16_9ROSA	1.3e-48	66.48	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Trema o...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11639-RA	Carg11639-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..127
None	No IPR available	PANTHER	PTHR36387	FAMILY NOT NAMED	coord: 2..178

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11639	Cla020163	Watermelon (97103) v1	carwmB1058
Carg11639	Csa2G292200	Cucumber (Chinese Long) v2	carcuB1070
Carg11639	MELO3C020918	Melon (DHL92) v3.5.1	carmeB1028
Carg11639	ClCG02G013070	Watermelon (Charleston Gray)	carwcgB1029
Carg11639	CSPI02G14600	Wild cucumber (PI 183967)	carcpiB1093
Carg11639	Cucsa.366550	Cucumber (Gy14) v1	carcgyB1178
Carg11639	CmaCh02G005640	Cucurbita maxima (Rimu)	carcmaB1466
Carg11639	CmoCh02G005730	Cucurbita moschata (Rifu)	carcmoB1422
Carg11639	Lsi10G005950	Bottle gourd (USVL1VR-Ls)	carlsiB963
Carg11639	Cp4.1LG05g11160	Cucurbita pepo (Zucchini)	carcpeB1476
Carg11639	CsGy2G014610	Cucumber (Gy14) v2	carcgybB1039
Carg11639	MELO3C020918.2	Melon (DHL92) v3.6.1	carmedB1041
Carg11639	CsaV3_2G017150	Cucumber (Chinese Long) v3	carcucB1103
Carg11639	Cla97C02G038740	Watermelon (97103) v2	carwmbB1116
Carg11639	Bhi10G001801	Wax gourd	carwgoB1242

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11639	Cucumber (Gy14) v2	carcgybB1041
Carg11639	Cucumber (Gy14) v1	carcgyB1176
Carg11639	Cucurbita maxima (Rimu)	carcmaB1465
Carg11639	Cucurbita moschata (Rifu)	carcmoB1420
Carg11639	Cucurbita pepo (Zucchini)	carcpeB1471
Carg11639	Cucurbita pepo (Zucchini)	carcpeB1472
Carg11639	Wild cucumber (PI 183967)	carcpiB1096
Carg11639	Cucumber (Chinese Long) v2	carcuB1073
Carg11639	Cucumber (Chinese Long) v3	carcucB1105
Carg11639	Bottle gourd (USVL1VR-Ls)	carlsiB968
Carg11639	Melon (DHL92) v3.5.1	carmeB1025
Carg11639	Melon (DHL92) v3.6.1	carmedB1038
Carg11639	Melon (DHL92) v3.6.1	carmedB1042
Carg11639	Watermelon (Charleston Gray)	carwcgB1031
Carg11639	Watermelon (97103) v1	carwmB1060
Carg11639	Watermelon (97103) v2	carwmbB1118
Carg11639	Wax gourd	carwgoB1248