Carg11639-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11639-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Location	Cucurbita_argyrosperma_scaffold_035 : 311058 .. 314501 (+)
Sequence length	537

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACTCAAACGATACCGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGTTCGTTGTTTCCAACTTTCTATATTTCTATTTGCCGCTTGTTTGAACTCTCCAGCTATGTTCTAAGGAAGCAATGATTTATATTAGGAACTCATCTGTTGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAGGTGTGTTTTCAATCCGTATTTCCTATTAGCGAATTGTATTTGGTGTCCAACCTTGTGCTTTCATCATTATTTCACCAATGACTTTTCTATTTAGTTTTTGTAAAGTTTGATTCTCTATTTATTTCCATGGATTTTTCGTCATCCTTCATGGGATTTAATGGCTTCACGTGTAATCTACTTCTGCATTGTGTTTAGTCTTCTCACTGCGTTTGGAGCTGTTTTTGTGGTTTTGTGTTTTCACTTCTCTTATTTGAAGTTGAGCTGACATTGTAGATTCTTAAGACGTGGCTTCAATTATTTACTTCGATTGCATATCGATGGATTTCTTTATCTAGCTATATATATATATATATATTGTATATGTATATGTATGTACATATAGATATATGAGTGAGGATTTGAACCTTCAAGAAGTAGGCGATATATCTTAACCCCAAAATTTCTATCTTAAACTCCAGACGACGATGCAACAAGATTAGGAATATCAACATGTTTATGTTTCTCTCTAACCAAATTTACTGAAGAGTTGCTTCACCATGTTATAGAAGAGTTCCTTAGCCTTCAGTTTGAAGGAGTTCCCTCCTGCAATTGAAAGTTCAGATCCTTGACCTGCAAAGGGAAAACATAAAATAGTCCTGCATCCTGTACCACACTGCAATAAAATGGGCAGAGAAAGGAAACAAGATTCGATCTCTCAACTTATGGTCTACTCATATTGCAACACCCTTCCCTAAGGATAACATAAGCAATTATTTTTCTGAGTTTCATCAGCACTAGAAGTGTTATTCTTGTTGCTACCATGGATCCCAAACCAGTAGAACACGCTTGTCTTCTTCTGATACCTATAATTCCATACCAGACTACTGAGGGAAGGAGGATAGCAATCTCAGTTGTTGACCTCTTGAAGAACAGGCTCAAGAAAATTTTCCTGAACTTTTTGAATACCAAATCCTGACATGTTGTCCATCAGTAGTAAAGAGATGATTTACCTACCTGATCAAAGTTAACCCTCCCTGAAACTCCCAATCTTGAGATACCAAGTTCCATAGTCTCAGAATTTCTAGAGTCATAAATGTTGAACTTCTTTTATTTGTGAGGGCATAGACTTGAGATCCGAGATAGTTGAAAGAGTTTTGGGACCGTTGATCCTTCTTGACGTGAACAGATGTATCTACCTTTGCCCACCTTGATAACTGAATTCTCTTATGAATTATGTGACATTGTACTTTTGGAGATTAGAAACCACAAGCTTACGTGCTGCTATACGAGCATCTACCAGAAGTCCAAATCCCAATCTAACAAAAAGGGCCAATCCATCAGGTTAGGGTTTCTCATAATCAAGCATGCAGGATAACCCTTCCTTTTTATTTTTTTCCCGCATTAATCAGGATATTCTTAACGAGTACGTGATTCAGGGTTTGTCCATCTTCCTTGAAGGGCAATGGAAATGGTAAAGAGAAGGACCATCTAAGGTTTTGTAGTGCAAATATTAACAGCACACTCATGTCAAAGCTTAAACCATGTTTTGAAGGACTCTTGAACCTTAAACCTTGAGGCTTGCCTAGCTTCAGGTTGAGTCTCAAATTTTTAAGCCTCTATACTTGGCCTTCTTTGATTCATAAGGGGATTATGCCTTAACTGTAAAAATGTATTACATCTACCGTAGGATATAACATCTTGAAACCCAATCAATAATTTTTCAGTCCAACAGAAGAGACCAAACAATCATACCCACTAAAAGTCTCCAAAGGTCTTTTTGTCAGAGAAGCCTATGCAGTGAAACTTTGCTCAGAAATCCATAATAGAAGGAATGCACCAAATTTTTTGGCTTGCCAGCAATATGTTCATAAAATCGAAGTGAAGTGGAAAGTAATGGAAAGACAATCCAACGATTTTCCTTGATTCTGCAGGGTTTTTTTATTTACAAATACAATTCTAAATTCCTTTTCATATGGCTTTATATGTTATTGTCTGTCTTTTTTTCGTTGTTCAATAATCTAGTTCAAAAAGAACAAAGGTGGTTTAATTTTGTGCATAAATTGCTGAGGCTCAATGTTCACAACAATGGTAACTATTGATTTCTTTTCACGGTTTAATTTCTTGTTGGCAATTATTTCATGAGTTTCTTACCTCAAATGCAGTAGGATTCTATGGTTGTTTCATGCTGTTAATTAAAGTGCATGTAAATTGGCTTGGATTGCTAATTATGTTTATTGCTGTTGTAATTAGACCAGGTTTTTGTGTTATTATTGAGCCCTTGATTTGGGCCTGGGCAATTCTGTCTTTTACTTAATGGGTTGCCATCTGATCTGTTTTCCATCTTCTGCATTAACAAGAATAAGATTTTTAGTACCCCCCAGATGCTCTGAACCATGTTTTTTAATCAATGAAACAAATGATAGTTGGCTAGGATGGCTAGCTTTGTCATGCCCATTGCTATAGGGTATTTTCCGATAAGAGCACTACTGAATCGAGGATAGTCGTTCATTCTCAGAATTCAATGTAGTGTTGGGAATTCCTGCCCGCGATGCAATTAGATGATATATGAAAGGATAGTGTCCTTTGATGCACGTCTGTTTATTACTTGGTTTTTTGGACAGAAGATGATAAATGGCATTATTTATGTAGGGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAGGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACAATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAGTACGTCTCTTTCCCACTCTCCATTCATTTCTGCACAGATTATAGTTTCGCTAAACATCTAATTTGGTGTACTCTCCATCTATAGACAAGTTTTCTCATCAGACCCAGGTGACGAAAAGCCTGCAGCTAAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGTGAGAGACCTGACTCTGTAGTTACTGAAGATGTTCTTCTCGATTTTATTATACCTTCTGAAATAGAACGATCCATTTTTGTAAATGCAGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCGTTGGAATTTTTGAAGAAAAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAA

mRNA sequence

ATGTCGGACTCAAACGATACCGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAGGGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAGGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACAATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAACAAGTTTTCTCATCAGACCCAGGTGACGAAAAGCCTGCAGCTAAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCGTTGGAATTTTTGAAGAAAAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAA

Coding sequence (CDS)

ATGTCGGACTCAAACGATACCGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAGGGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAGGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACAATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAACAAGTTTTCTCATCAGACCCAGGTGACGAAAAGCCTGCAGCTAAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCGTTGGAATTTTTGAAGAAAAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAA

Protein sequence

MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

Homology

[Close]

BLAST of Carg11639-RA vs. NCBI nr
Match: XP_022947715.1 (uncharacterized protein LOC111451498 [Cucurbita moschata])

HSP 1 Score: 318.2 bits (814), Expect = 1.8e-83
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK
Sbjct: 1   MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
            ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK
Sbjct: 61  SETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639-RA vs. NCBI nr
Match: XP_023006926.1 (uncharacterized protein LOC111499570 [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 3.8e-81
Identity = 171/178 (96.07%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD NDTDSDAPEEFTAEQGIQQDEEIRK+QKESSARVVREGKERRRQWAEKKTPR SKK
Sbjct: 1   MSDPNDTDSDAPEEFTAEQGIQQDEEIRKLQKESSARVVREGKERRRQWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKT+R+KSK
Sbjct: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTRRRKSK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLN RAPSQC QNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNARAPSQCSQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639-RA vs. NCBI nr
Match: XP_023533260.1 (uncharacterized protein LOC111795202 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.1 bits (793), Expect = 5.0e-81
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD NDTDSDAPEEFTAEQGIQQDEEI KVQKESSARVVREGKERRRQWAEKKTPR SKK
Sbjct: 119 MSDPNDTDSDAPEEFTAEQGIQQDEEITKVQKESSARVVREGKERRRQWAEKKTPRPSKK 178

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GETVEDVAETPRH+DQVSKLGML SNLVQLLAEREKQVFSSDPGDEKPAAKSKTKR+KSK
Sbjct: 179 GETVEDVAETPRHDDQVSKLGMLSSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRRKSK 238

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Sbjct: 239 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 296

[Close]

BLAST of Carg11639-RA vs. NCBI nr
Match: XP_022158697.1 (uncharacterized protein LOC111025162 [Momordica charantia])

HSP 1 Score: 279.6 bits (714), Expect = 7.2e-72
Identity = 155/177 (87.57%), Postives = 162/177 (91.53%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKK
Sbjct: 1   MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFSSDPGDEKPAAK KTKRKK+K
Sbjct: 61  GETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFSSDPGDEKPAAKPKTKRKKTK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTK 178
           SSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALR LSSSGLLTK
Sbjct: 121 SSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRRLSSSGLLTK 177

[Close]

BLAST of Carg11639-RA vs. NCBI nr
Match: XP_004148046.1 (PREDICTED: uncharacterized protein LOC101208336 [Cucumis sativus] >KGN62039.1 hypothetical protein Csa_2G292200 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 146/178 (82.02%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GE VED+AE PR++D++SKLG LPSN+VQLL +REKQVFSSD GDEKPA K K KRKK+K
Sbjct: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFSSDSGDEKPAIKPKQKRKKTK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639-RA vs. TAIR10
Match: AT4G37090.1 (unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 6.8e-24
Identity = 80/183 (43.72%), Postives = 108/183 (59.02%), Query Frame = 0


Query: 1   MSDS--NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRAS 60
           MSD+   D+DSDAPEE T EQ   ++E + K+Q+E+  RV RE KERR+  AE+ T R S
Sbjct: 1   MSDNKDRDSDSDAPEELTQEQAKLEEEALWKIQRENKNRVSREKKERRKLMAEQVTLRKS 60

Query: 61  KKGETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTK 120
           +K E +EDV   E P  N + ++  G L  +++  LAEREKQ   S              
Sbjct: 61  RKIEIIEDVVEEEEPEENSEALANKGFLSKDIIDFLAEREKQKAES-XXXXXXXXXXXXX 120

Query: 121 RKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLL 179
                SSGIETV+  E  P +CL+  L+FLK R+  +PRSSSV+ NS QALRL + + L 
Sbjct: 121 XXXXXSSGIETVIYKEIPPPECLKTGLDFLKMRRAQVPRSSSVIKNSGQALRLATGAALA 180

[Close]

BLAST of Carg11639-RA vs. TrEMBL
Match: tr|A0A0A0LM07|A0A0A0LM07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292200 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.4e-68
Identity = 146/178 (82.02%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GE VED+AE PR++D++SKLG LPSN+VQLL +REKQVFSSD GDEKPA K K KRKK+K
Sbjct: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFSSDSGDEKPAIKPKQKRKKTK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Sbjct: 121 SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK 178

[Close]

BLAST of Carg11639-RA vs. TrEMBL
Match: tr|A0A1S3C749|A0A1S3C749_CUCME (uncharacterized protein LOC103497440 OS=Cucumis melo OX=3656 GN=LOC103497440 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 145/179 (81.01%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQ ES ARV+REGKERRR WAEKKTPR SKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQNESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
           GE VED+AE PR++D+VSKLG LPSN+VQLL +REKQVFSSD GDEKPA K K KRKK+K
Sbjct: 61  GEIVEDLAEPPRNDDKVSKLGTLPSNVVQLLVDREKQVFSSDLGDEKPAIKPKQKRKKTK 120

Query: 121 -SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
            SSGIETVLL+ER PS CLQNSLEFLKKRKMN+ RSS+VL+N NQA RLLSSSGLLTKK
Sbjct: 121 SSSGIETVLLSERTPSHCLQNSLEFLKKRKMNVARSSTVLNNPNQAFRLLSSSGLLTKK 179

[Close]

BLAST of Carg11639-RA vs. TrEMBL
Match: tr|A0A2C9URG4|A0A2C9URG4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G131900 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 7.9e-51
Identity = 117/178 (65.73%), Postives = 143/178 (80.34%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MS   D+DSDAPEEFT+EQG QQDEEIRKVQKE+  R+VREGKERRR WA++KTPR SK 
Sbjct: 1   MSGREDSDSDAPEEFTSEQGTQQDEEIRKVQKENKTRIVREGKERRRLWAQRKTPRPSKG 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKSK 120
            E+V+DV E     + +   GMLP+++VQLLA REK+VF SD  DEK  AK   ++KK K
Sbjct: 61  DESVQDVMEAETEKESLGTEGMLPNDIVQLLAAREKKVFLSDSEDEKVDAKLPPRKKKPK 120

Query: 121 SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK 179
           SSG+ETV+L E +P QCLQNSL+FLKK+KM + RSSSVL+NSNQALRL+S+SGLL+KK
Sbjct: 121 SSGMETVILKEMSPPQCLQNSLDFLKKKKMQVSRSSSVLNNSNQALRLISTSGLLSKK 178

[Close]

BLAST of Carg11639-RA vs. TrEMBL
Match: tr|A0A2P5BZ49|A0A2P5BZ49_PARAD (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_198070 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.3e-49
Identity = 118/176 (67.05%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MS   D DSDAPEEFTAEQGI QD+E+ KVQKE+ ARV REGKERRR WA++KTP+ SK+
Sbjct: 1   MSGKEDNDSDAPEEFTAEQGILQDQELTKVQKENKARVAREGKERRRIWAQRKTPKPSKE 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKS- 120
            E+V+DVA+T   ++   + GMLP  +VQLLA REKQVF SD  DEK   K  +KRKK  
Sbjct: 61  AESVQDVAQTENPDEPSGRAGMLPDEIVQLLAAREKQVFLSDSEDEKTEVKRSSKRKKKP 120

Query: 121 KSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLL 176
            SSG++TV+LNE   +QCLQNSLEFLKKRKM + RSSSVL NSNQALRLLSSSGLL
Sbjct: 121 SSSGVDTVVLNEIPSAQCLQNSLEFLKKRKMQVSRSSSVLRNSNQALRLLSSSGLL 176

[Close]

BLAST of Carg11639-RA vs. TrEMBL
Match: tr|A0A2P5FY16|A0A2P5FY16_9ROSA (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Trema orientalis OX=63057 GN=TorRG33x02_016330 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 117/176 (66.48%), Postives = 139/176 (78.98%), Query Frame = 0


Query: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60
           MS   D DSDAPEEFTAEQGI QD+E+ KVQKE+ ARV REGKERRR WA++KTP+ SK+
Sbjct: 1   MSGKEDYDSDAPEEFTAEQGILQDQELTKVQKENKARVAREGKERRRIWAQRKTPKPSKE 60

Query: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAAKSKTKRKKS- 120
            E+V+DVA+T   ++   + GMLP+ +VQLLA REKQVF SD  DEK   K  +KRKK  
Sbjct: 61  AESVQDVAQTGNPDEPSGREGMLPNEIVQLLAAREKQVFLSDSEDEKTEVKRSSKRKKKP 120

Query: 121 KSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLL 176
            SSG++T++LNE   +QCLQNSLEFLKKRKM + RSSSVL NSNQALRLLSSSGLL
Sbjct: 121 SSSGVDTIVLNEIPSAQCLQNSLEFLKKRKMQVSRSSSVLKNSNQALRLLSSSGLL 176

The following BLAST results are available for this feature:

BLAST of Carg11639-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947715.1	1.8e-83	98.88	uncharacterized protein LOC111451498 [Cucurbita moschata]	[more]
XP_023006926.1	3.8e-81	96.07	uncharacterized protein LOC111499570 [Cucurbita maxima]	[more]
XP_023533260.1	5.0e-81	96.63	uncharacterized protein LOC111795202 [Cucurbita pepo subsp. pepo]	[more]
XP_022158697.1	7.2e-72	87.57	uncharacterized protein LOC111025162 [Momordica charantia]	[more]
XP_004148046.1	3.7e-68	82.02	PREDICTED: uncharacterized protein LOC101208336 [Cucumis sativus] >KGN62039.1 hy...	[more]

BLAST of Carg11639-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37090.1	6.8e-24	43.72	unknown protein	[more]

BLAST of Carg11639-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11639-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM07\|A0A0A0LM07_CUCSA	2.4e-68	82.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292200 PE=4 SV=1	[more]
tr\|A0A1S3C749\|A0A1S3C749_CUCME	1.1e-65	81.01	uncharacterized protein LOC103497440 OS=Cucumis melo OX=3656 GN=LOC103497440 PE=...	[more]
tr\|A0A2C9URG4\|A0A2C9URG4_MANES	7.9e-51	65.73	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G131900 PE=4 SV=...	[more]
tr\|A0A2P5BZ49\|A0A2P5BZ49_PARAD	4.3e-49	67.05	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Paraspo...	[more]
tr\|A0A2P5FY16\|A0A2P5FY16_9ROSA	1.3e-48	66.48	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase OS=Trema o...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11639	Carg11639	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11639-RA	Carg11639-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11639-RA.exon.1	Carg11639-RA.exon.1	exon
Carg11639-RA.exon.2	Carg11639-RA.exon.2	exon
Carg11639-RA.exon.3	Carg11639-RA.exon.3	exon
Carg11639-RA.exon.4	Carg11639-RA.exon.4	exon
Carg11639-RA.exon.5	Carg11639-RA.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11639-RA.CDS.1	Carg11639-RA.CDS.1	CDS
Carg11639-RA.CDS.2	Carg11639-RA.CDS.2	CDS
Carg11639-RA.CDS.3	Carg11639-RA.CDS.3	CDS
Carg11639-RA.CDS.4	Carg11639-RA.CDS.4	CDS
Carg11639-RA.CDS.5	Carg11639-RA.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..127
None	No IPR available	PANTHER	PTHR36387	FAMILY NOT NAMED	coord: 2..178