Carg11537 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11537
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_083 : 538616 .. 539813 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAAGCCCAGGAGTTTTGTTCTTCTTTGGAACCAAACTAACACATCACCTCATCAAATTCCCGAGCTATGAGGTAGTAATCGGCTATATAGTACGGTTAGAATCTCATTGCTATCTTTACCATCTTTTATTTTAGTCTTATAGCTTTATTAGTCTATATGCTTCTTATGGATACATAAATCTAGTCTAAACGACTTTTAACTTTTCAAAATTTCTTATTAACTCCTTTGAAATTACCTTCAATTGAGAAAGATCCAATTTGAAACAAAGAATCATATGGGTACTCTTATATTTCTCCAATTTGTCCCATTTTTACACCGATTTTCAAACATGAAGTAAGCATAAAATAAATCAGAATCTCCCAAGTTCTTAGTGTCTCTTTTTGAGCATTAAACTCAACCATGCTAACTCCCAAGATCCCTTCGTGGGTTTTATTATCCTTTCCTATATACTTTGTAGTTTAGGATAGAATTGGATGAAGAAATGGTTTAGGATAGAATTGAGTTGAATGAGTAAGAAATGGTATGTTGGAAAGTTGAAGACTTAGCTTTGTTGAAGAAGAAGGCATAGATTCCAACAAGTTCTTCGTCCATCAGCATCAACACAGTATTGATCGTGATTCAACGCAGAACAAAATTGGCCAAAAACAGGTCAATCTAATCACAGAACAGACAATGAGAAGCAGAAACCGTATTGGGCGATTTTCATTTCTTGACGAATTGCAACCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACCGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTTGTCAGCCTCACGTCCGGCACCGTCTGCTCGTCCGTGCCCTGGATGAACTGGATCTTCGGCAGAACCATGAGGATCGTATTGGACGGCCGTCCGTGGGGTTGACATCTGCGGCGAGTGACCGTCTGGCATTTTCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGACGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

mRNA sequence

ATGGGAAGAAGCCCAGGAGTTTTGTTCTTCTTTGGAACCAAACTAACACATCACCTCATCAAATTCCCGAGCTATGAGGTAGTAATCGGCTATATAGTACGACTTAGCTTTGTTGAAGAAGAAGGCATAGATTCCAACAAGTTCTTCGTCCATCAGCATCAACACAGTATTGATCGTGATTCAACGCAGAACAAAATTGGCCAAAAACAGGTCAATCTAATCACAGAACAGACAATGAGAAGCAGAAACCGTATTGGGCGATTTTCATTTCTTGACGAATTGCAACCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACCGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTTGTCAGCCTCACGTCCGGCACCGTCTGCTCGTCCGTGCCCTGGATGAACTGGATCTTCGGCAGAACCATGAGGATCGTATTGGACGGCCGTCCGTGGGGTTGACATCTGCGGCGAGTGACCGTCTGGCATTTTCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGACGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

Coding sequence (CDS)

ATGGGAAGAAGCCCAGGAGTTTTGTTCTTCTTTGGAACCAAACTAACACATCACCTCATCAAATTCCCGAGCTATGAGGTAGTAATCGGCTATATAGTACGACTTAGCTTTGTTGAAGAAGAAGGCATAGATTCCAACAAGTTCTTCGTCCATCAGCATCAACACAGTATTGATCGTGATTCAACGCAGAACAAAATTGGCCAAAAACAGGTCAATCTAATCACAGAACAGACAATGAGAAGCAGAAACCGTATTGGGCGATTTTCATTTCTTGACGAATTGCAACCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACCGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTTGTCAGCCTCACGTCCGGCACCGTCTGCTCGTCCGTGCCCTGGATGAACTGGATCTTCGGCAGAACCATGAGGATCGTATTGGACGGCCGTCCGTGGGGTTGACATCTGCGGCGAGTGACCGTCTGGCATTTTCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGACGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

Protein sequence

MGRSPGVLFFFGTKLTHHLIKFPSYEVVIGYIVRLSFVEEEGIDSNKFFVHQHQHSIDRDSTQNKIGQKQVNLITEQTMRSRNRIGRFSFLDELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESGNVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLRQNHEDRIGRPSVGLTSAASDRLAFSARDVKGTAVECGEDAAVESGGGKSC

Homology

[Close]

BLAST of Carg11537 vs. NCBI nr
Match: ACR33875.1 (unknown [Zea mays])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]

BLAST of Carg11537 vs. NCBI nr
Match: ACR35848.1 (unknown [Zea mays])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]

BLAST of Carg11537 vs. TrEMBL
Match: tr|C4IY75|C4IY75_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]

BLAST of Carg11537 vs. TrEMBL
Match: tr|C4J3U8|C4J3U8_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

The following BLAST results are available for this feature:

BLAST of Carg11537 vs. NCBI nr


Match Name	E-value	Identity	Description
ACR33875.1	2.7e-32	63.30	unknown [Zea mays]	[more]
ACR35848.1	2.7e-32	63.30	unknown [Zea mays]	[more]

BLAST of Carg11537 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11537 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11537 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|C4IY75\|C4IY75_MAIZE	1.8e-32	63.30	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
tr\|C4J3U8\|C4J3U8_MAIZE	1.8e-32	63.30	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11537-RA	Carg11537-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11537	CmaCh17G013690	Cucurbita maxima (Rimu)	carcmaB0020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11537	Wax gourd	carwgoB0013
Carg11537	Silver-seed gourd	carcarB014
Carg11537	Cucumber (Gy14) v2	carcgybB0011
Carg11537	Cucumber (Gy14) v1	carcgyB0012
Carg11537	Cucurbita maxima (Rimu)	carcmaB0023
Carg11537	Cucurbita moschata (Rifu)	carcmoB0021
Carg11537	Cucurbita moschata (Rifu)	carcmoB0024
Carg11537	Cucurbita pepo (Zucchini)	carcpeB0022
Carg11537	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11537	Wild cucumber (PI 183967)	carcpiB0012
Carg11537	Cucumber (Chinese Long) v2	carcuB0012
Carg11537	Cucumber (Chinese Long) v3	carcucB0012
Carg11537	Bottle gourd (USVL1VR-Ls)	carlsiB011
Carg11537	Melon (DHL92) v3.5.1	carmeB0010
Carg11537	Melon (DHL92) v3.6.1	carmedB0011
Carg11537	Watermelon (Charleston Gray)	carwcgB0013
Carg11537	Watermelon (97103) v1	carwmB0015
Carg11537	Watermelon (97103) v2	carwmbB0011