Carg11537-RA (mRNA) Silver-seed gourd

Overview
NameCarg11537-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_083 : 538616 .. 539813 (+)
Sequence length753
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAAGCCCAGGAGTTTTGTTCTTCTTTGGAACCAAACTAACACATCACCTCATCAAATTCCCGAGCTATGAGGTAGTAATCGGCTATATAGTACGGTTAGAATCTCATTGCTATCTTTACCATCTTTTATTTTAGTCTTATAGCTTTATTAGTCTATATGCTTCTTATGGATACATAAATCTAGTCTAAACGACTTTTAACTTTTCAAAATTTCTTATTAACTCCTTTGAAATTACCTTCAATTGAGAAAGATCCAATTTGAAACAAAGAATCATATGGGTACTCTTATATTTCTCCAATTTGTCCCATTTTTACACCGATTTTCAAACATGAAGTAAGCATAAAATAAATCAGAATCTCCCAAGTTCTTAGTGTCTCTTTTTGAGCATTAAACTCAACCATGCTAACTCCCAAGATCCCTTCGTGGGTTTTATTATCCTTTCCTATATACTTTGTAGTTTAGGATAGAATTGGATGAAGAAATGGTTTAGGATAGAATTGAGTTGAATGAGTAAGAAATGGTATGTTGGAAAGTTGAAGACTTAGCTTTGTTGAAGAAGAAGGCATAGATTCCAACAAGTTCTTCGTCCATCAGCATCAACACAGTATTGATCGTGATTCAACGCAGAACAAAATTGGCCAAAAACAGGTCAATCTAATCACAGAACAGACAATGAGAAGCAGAAACCGTATTGGGCGATTTTCATTTCTTGACGAATTGCAACCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACCGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTTGTCAGCCTCACGTCCGGCACCGTCTGCTCGTCCGTGCCCTGGATGAACTGGATCTTCGGCAGAACCATGAGGATCGTATTGGACGGCCGTCCGTGGGGTTGACATCTGCGGCGAGTGACCGTCTGGCATTTTCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGACGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

mRNA sequence

ATGGGAAGAAGCCCAGGAGTTTTGTTCTTCTTTGGAACCAAACTAACACATCACCTCATCAAATTCCCGAGCTATGAGGTAGTAATCGGCTATATAGTACGACTTAGCTTTGTTGAAGAAGAAGGCATAGATTCCAACAAGTTCTTCGTCCATCAGCATCAACACAGTATTGATCGTGATTCAACGCAGAACAAAATTGGCCAAAAACAGGTCAATCTAATCACAGAACAGACAATGAGAAGCAGAAACCGTATTGGGCGATTTTCATTTCTTGACGAATTGCAACCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACCGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTTGTCAGCCTCACGTCCGGCACCGTCTGCTCGTCCGTGCCCTGGATGAACTGGATCTTCGGCAGAACCATGAGGATCGTATTGGACGGCCGTCCGTGGGGTTGACATCTGCGGCGAGTGACCGTCTGGCATTTTCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGACGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

Coding sequence (CDS)

ATGGGAAGAAGCCCAGGAGTTTTGTTCTTCTTTGGAACCAAACTAACACATCACCTCATCAAATTCCCGAGCTATGAGGTAGTAATCGGCTATATAGTACGACTTAGCTTTGTTGAAGAAGAAGGCATAGATTCCAACAAGTTCTTCGTCCATCAGCATCAACACAGTATTGATCGTGATTCAACGCAGAACAAAATTGGCCAAAAACAGGTCAATCTAATCACAGAACAGACAATGAGAAGCAGAAACCGTATTGGGCGATTTTCATTTCTTGACGAATTGCAACCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACCGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTTGTCAGCCTCACGTCCGGCACCGTCTGCTCGTCCGTGCCCTGGATGAACTGGATCTTCGGCAGAACCATGAGGATCGTATTGGACGGCCGTCCGTGGGGTTGACATCTGCGGCGAGTGACCGTCTGGCATTTTCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGACGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

Protein sequence

MGRSPGVLFFFGTKLTHHLIKFPSYEVVIGYIVRLSFVEEEGIDSNKFFVHQHQHSIDRDSTQNKIGQKQVNLITEQTMRSRNRIGRFSFLDELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESGNVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLRQNHEDRIGRPSVGLTSAASDRLAFSARDVKGTAVECGEDAAVESGGGKSC
Homology
[Close]
BLAST of Carg11537-RA vs. NCBI nr
Match: ACR33875.1 (unknown [Zea mays])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0 

Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]
BLAST of Carg11537-RA vs. NCBI nr
Match: ACR35848.1 (unknown [Zea mays])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0 

Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]
BLAST of Carg11537-RA vs. TrEMBL
Match: tr|C4IY75|C4IY75_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0 

Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]
BLAST of Carg11537-RA vs. TrEMBL
Match: tr|C4J3U8|C4J3U8_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0 

Query: 92  DELQPIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHRLNHTFLIDHVESG 151
           DEL+ +G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+H L H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 152 NVPDLPRRVEHRRLLELENGHSVGAVSGFCQPHVRHRLLVRALDELDLR 201
           +V  L RRVEHRR LE E+GH+VGAV+G  QPHVR RLLVRALDELD R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

The following BLAST results are available for this feature:
BLAST of Carg11537-RA vs. NCBI nr
Match NameE-valueIdentityDescription
ACR33875.12.7e-3263.30unknown [Zea mays][more]
ACR35848.12.7e-3263.30unknown [Zea mays][more]
BLAST of Carg11537-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg11537-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg11537-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|C4IY75|C4IY75_MAIZE1.8e-3263.30Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
tr|C4J3U8|C4J3U8_MAIZE1.8e-3263.30Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg11537Carg11537gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg11537-RA.exon.1Carg11537-RA.exon.1exon
Carg11537-RA.exon.2Carg11537-RA.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg11537-RA.CDS.1Carg11537-RA.CDS.1CDS
Carg11537-RA.CDS.2Carg11537-RA.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg11537-RACarg11537-RA-proteinpolypeptide