CmaCh17G013690 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G013690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 9160660 .. 9162072 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGTTTTTGAGTTCAACCCTCGTGTATCCTAATCTTCTTGATTCATGATTTAGAATTCACAGTTTATTTGGTGTTGTAATTAATAAAGGCTGGGATGCTTGGCTACAGCATACTATGATCATAAAATGTGTTTTTTCAGGAAAAAGAAAAGAACAGAAATGGGAAGAAGCCCGGGAGTTTTGTTCTTCTTTGGAACCAAACTAACGCATCACTTCATCAAATTCCCGAGCTATGAAGTAGTAATCGGCTATATAGTACGGTTAGGATCTCATTGCTATCTTTACCATCTTTTATTTTAGTCTTATAGCATTATTAGTCTATATGCTTCTATGGATGCATAAATTTAGTCGCAAATATCTTTACCGTAGTATACTACATTGTTTCAAACATACTCCAATTTTAAAATTTCTTATAACAACTTTGAATTTACCTTCAATTGGGAAAGATCCAATTTGAAACAAAGAATCATATGGGTACTCTTATATTTTTCCAATTTGTCCCATTTTTACACCGATTTTCAAACATCATGTAGCATAAAATCCGAAGTTCCAAAATCAAAATCTCCCAAGTTCTTAGTGTCTCTTTTTGAGCATTAAACTCAACCATGCAAACTCCCAAGATCCCTTCGTGGGTTTTATTATCCTTTCCTATATACTTTGAGTGAATGATATAGTTTAGGATAGAATTGGATGAAGAAATGGTTTAGGATAGAATTGAGTTGAATGAGTAAGAAATGGTATGTTGGAAAGTTGAAGACTTCGCTTTGTTGAAGAAGAAGACATAGATTCCAACAAATTCTTCATCCATCAGCATCAACACAGTATTGATCGTGATTCAACGCAGAACAAAATTGGCCAAAACAGGTCAATCTAATCACAGAACAGACAATGAGAAGCAGAAACCGTATTAGGCGATTTTCATTTCTTGACGAATTGCAAGCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACGGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTGGTCAGCCTCACGTCCGGCACCGTCTGTTCGTCCGTGCCCTGGATGAACTGAATCTTCGGCAGAACCATGAGGATCGTATTGGACAGCCGTCCGTGGGGTTTACATCTGCGGCGAGTGACCGTCTGGCATTTGCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGGCGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

mRNA sequence

ATGGAGAATACAATGAGAAGCAGAAACCGTATTAGGCGATTTTCATTTCTTGACGAATTGCAAGCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACGGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTGGTCAGCCTCACGTCCGGCACCGTCTGTTCGTCCGTGCCCTGGATGAACTGAATCTTCGGCAGAACCATGAGGATCGTATTGGACAGCCGTCCGTGGGGTTTACATCTGCGGCGAGTGACCGTCTGGCATTTGCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGGCGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

Coding sequence (CDS)

ATGGAGAATACAATGAGAAGCAGAAACCGTATTAGGCGATTTTCATTTCTTGACGAATTGCAAGCCATTGGCGTTGGAGTATCGCTCCATGAATCTCATGAACCTGTCCCACTCCCTCGGAGTCCGCATCACGTACTTGGCCTCGATTCCCGCAGGTTTTCCATTAATGAACTTGGCGTTCACATCCACGGACTGAATCACACCTTCCTCATCGATCATGTAGAATCCGGTAATGTCCCCGACCTCCCCCGACGAGTCGAACACCGACGGCTGCTCGAACTTGAAAATGGCCATTCCGTTGGTGCCGTCTCGGGATTTGGTCAGCCTCACGTCCGGCACCGTCTGTTCGTCCGTGCCCTGGATGAACTGAATCTTCGGCAGAACCATGAGGATCGTATTGGACAGCCGTCCGTGGGGTTTACATCTGCGGCGAGTGACCGTCTGGCATTTGCCGCCAGAGACGTTAAGGGAACGGCCGTGGAATGCGGAGAAGGCGCTGCTGTGGAGTCTGGCGGAGGCAAAAGCTGCTGA

Protein sequence

MENTMRSRNRIRRFSFLDELQAIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHGLNHTFLIDHVESGNVPDLPRRVEHRRLLELENGHSVGAVSGFGQPHVRHRLFVRALDELNLRQNHEDRIGQPSVGFTSAASDRLAFAARDVKGTAVECGEGAAVESGGGKSC
Homology
[Close]
BLAST of CmaCh17G013690 vs. TrEMBL
Match: C4J3U8_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 18  DELQAIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHGLNHTFLIDHVESG 77
           DEL+A+G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+HGL H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 78  NVPDLPRRVEHRRLLELENGHSVGAVSGFGQPHVRHRLFVRALDELNLR 127
           +V  L RRVEHRR LE E+GH+VGAV+G GQPHVR RL VRALDEL+ R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]
BLAST of CmaCh17G013690 vs. TrEMBL
Match: C4IY75_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 18  DELQAIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHGLNHTFLIDHVESG 77
           DEL+A+G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+HGL H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 78  NVPDLPRRVEHRRLLELENGHSVGAVSGFGQPHVRHRLFVRALDELNLR 127
           +V  L RRVEHRR LE E+GH+VGAV+G GQPHVR RL VRALDEL+ R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]
BLAST of CmaCh17G013690 vs. NCBI nr
Match: gi|238005680|gb|ACR33875.1| (unknown [Zea mays])

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-34
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 18  DELQAIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHGLNHTFLIDHVESG 77
           DEL+A+G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+HGL H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 78  NVPDLPRRVEHRRLLELENGHSVGAVSGFGQPHVRHRLFVRALDELNLR 127
           +V  L RRVEHRR LE E+GH+VGAV+G GQPHVR RL VRALDEL+ R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

[Close]
BLAST of CmaCh17G013690 vs. NCBI nr
Match: gi|238009626|gb|ACR35848.1| (unknown [Zea mays])

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-34
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 18  DELQAIGVGVSLHESHEPVPLPRSPHHVLGLDSRRFSINELGVHIHGLNHTFLIDHVESG 77
           DEL+A+G GV LHE+HE VPL R  HHVLGLD RR +++ELG H+HGL H  ++ HV++ 
Sbjct: 9   DELEAVGPGVPLHEAHEAVPLLRRAHHVLGLDPRRLAVHELGAHVHGLQHALVVHHVKAR 68

Query: 78  NVPDLPRRVEHRRLLELENGHSVGAVSGFGQPHVRHRLFVRALDELNLR 127
           +V  L RRVEHRR LE E+GH+VGAV+G GQPHVR RL VRALDEL+ R
Sbjct: 69  DVAQLRRRVEHRRTLEREDGHAVGAVAGLGQPHVRDRLLVRALDELDRR 117

The following BLAST results are available for this feature:
BLAST of CmaCh17G013690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G013690 vs. TrEMBL
Match NameE-valueIdentityDescription
C4J3U8_MAIZE1.6e-3464.22Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
C4IY75_MAIZE1.6e-3464.22Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of CmaCh17G013690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G013690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|238005680|gb|ACR33875.1|2.3e-3464.22unknown [Zea mays][more]
gi|238009626|gb|ACR35848.1|2.3e-3464.22unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G013690.1CmaCh17G013690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G013690Carg11537Silver-seed gourdcarcmaB0020
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G013690Cucumber (Gy14) v2cgybcmaB751
CmaCh17G013690Melon (DHL92) v3.6.1cmamedB367
CmaCh17G013690Silver-seed gourdcarcmaB1351
CmaCh17G013690Cucumber (Chinese Long) v3cmacucB0429
CmaCh17G013690Cucumber (Chinese Long) v3cmacucB0439
CmaCh17G013690Watermelon (97103) v2cmawmbB369
CmaCh17G013690Wax gourdcmawgoB0456
CmaCh17G013690Cucurbita maxima (Rimu)cmacmaB384
CmaCh17G013690Cucumber (Gy14) v1cgycmaB0951
CmaCh17G013690Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G013690Cucurbita moschata (Rifu)cmacmoB376
CmaCh17G013690Wild cucumber (PI 183967)cmacpiB371
CmaCh17G013690Cucumber (Chinese Long) v2cmacuB367
CmaCh17G013690Melon (DHL92) v3.5.1cmameB315
CmaCh17G013690Watermelon (Charleston Gray)cmawcgB322
CmaCh17G013690Watermelon (97103) v1cmawmB352
CmaCh17G013690Cucurbita pepo (Zucchini)cmacpeB389
CmaCh17G013690Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G013690Bottle gourd (USVL1VR-Ls)cmalsiB333